Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Unification of auto3dseg algorithm template format and MONAI bundle format #7467

Open
mea02jct opened this issue Feb 13, 2024 · 1 comment
Open
Labels
enhancement New feature or request Feature request

Comments

@mea02jct
Copy link

Following on from this discussion https://github.com/Project-MONAI/MONAILabel/discussions/1630...

Currently, trained auto3dseg models have their own algorithm bundle format, which is different to that of a 'conventional' MONAI bundle as found in the model zoo.

Having two types of 'bundle' is confusing and the documentation isn't very clear on this. At the macro level it does also make me wonder which format will MONAI be using in the longer term. Like a lot of other people I'm keen to standardise my trained models.

It would be great if the two 'bundle' types could be unified, or at least provide a clear differentiation between the two

Thanks

@KumoLiu
Copy link
Contributor

KumoLiu commented Feb 19, 2024

Hi @mea02jct, thanks for your interest here.
The algorithms in auto3dseg are not in MONAI bundle format yet, we have plans to enhance them to adapt to the bundle format but have not gotten time yet.

You can find the details of how to MONAI Bundle is defined here.
https://docs.monai.io/en/latest/mb_specification.html#monai-bundle-specification
Hope it helps, thanks.

@KumoLiu KumoLiu added enhancement New feature or request Feature request labels Feb 19, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request Feature request
Projects
None yet
Development

No branches or pull requests

2 participants