MONAI Label supports following OS with GPU/CUDA enabled.
Make sure you have python 3.x version environment with PyTorch and CUDA installed.
- Install Python
- Install the following Python libraries
python -m pip install --upgrade pip setuptools wheel
# Install latest stable version for pytorch
pip install torch==1.9.0+cu111 torchvision==0.10.0+cu111 torchaudio===0.9.0 -f https://download.pytorch.org/whl/torch_stable.html
# Check if cuda enabled
python -c "import torch; print(torch.cuda.is_available())"
To install the current milestone release: :
pip install monailabel
To install the weekly preview release: :
pip install monailabel-weekly
The weekly build is released to PyPI every Sunday with a pre-release build number dev[%y%U].
To install latest from github main branch :
pip install git+https://github.com/Project-MONAI/MONAILabel#egg=monailabel
Note
If you have installed the PyPI release version using pip install monailabel
, please run pip uninstall monailabel
before using the commands from this section. Because pip
by default prefers the milestone release.
The milestone versions are currently planned and released every few months. As the codebase is under active development, you may want to install MONAI from GitHub for the latest features
Simple monailabel command will help user to download sample apps, datasets and run server. :
monailabel --help
You can download sample apps and datasets from monailabel CLI.
# Download Sample Apps
monailabel apps # List sample apps
monailabel apps --download --name deepedit_left_atrium --output apps
# Download MSD Datasets
monailabel datasets # List sample datasets
monailabel datasets --download --name Task02_Heart --output datasets
You can start server using monailabel CLI :
monailabel start_server --app apps\deepedit_left_atrium --studies datasets\Task02_Heart\imagesTr
Note
Once you start the MONAI Label Server, by default it will be up and serving at http://127.0.0.1:8000/. Open the serving URL in browser. It will provide you the list of Rest APIs available.
Download Preview Release from https://download.slicer.org/ and install MONAI Label plugin from Slicer Extension Manager.
Refer 3D Slicer plugin for other options to install and run MONAI Label plugin in 3D Slicer.