V1.1.1 updated ReadMe, News and cran-comments ready for submission.

NEWS.md

@@ -1,11 +1,5 @@
 ## PHEindicatormethods v1.1.1
 
-Minor changes to phe_sii function documentation  
-
-
-
-## PHEindicatormethods v1.1.0
-
 The following changes may affect backwards compatibility with earlier versions of the package:  
 
 * phe_proportion: Replaced logical PERCENTAGE argument with a numeric MULTIPLIER argument to enable proportions to be expressed more flexibly (eg per 1000). Default is now multiplier = 1 which gives equivalent output to the previous default of percentage = FALSE.  There is loss of backwards compatibility where the percentage argument has previously been specified in the function call - please replace 'percentage=TRUE' with 'multiplier=100' and 'percentage=FALSE' with 'multiplier=1'.

R/SII_function.R

@@ -31,7 +31,7 @@
 #' according to the indicator polarity. Since the relative ranks, by definition, range from
 #' 0 to 1, the SII is the difference between the fitted value at  \code{x=1} and  \code{x=0}.
 #'
-#' The RII is the ration of the fitted value at  \code{x=1,Y1} and the fitted value at
+#' The RII is the ratio of the fitted value at  \code{x=1,Y1} and the fitted value at
 #'   \code{x=0,Y0}.  which can be calculated as:  \code{RII = (Y0 + SII)/Y0}
 #'
 #' @section Function arguments:
@@ -103,6 +103,8 @@
 #' @importFrom tidyr nest unnest spread
 #' @importFrom stats rnorm qnorm lm
 #'
+#' @author Emma Clegg, \email{emma.clegg@@phe.gov.uk}
+#'
 #' @export
 #'
 #' @return The SII with lower and upper confidence limits for each subgroup of the inputted data.frame.

README.Rmd

@@ -23,7 +23,7 @@ Status](https://coveralls.io/repos/github/PublicHealthEngland/PHEindicatormethod
 
 # PHEindicatormethods
 
-This is an R package to support analysts in the execution of statistical methods approved for use in the production of PHE indicators such as those presented via Fingertips.  It provides functions for the generation of Proportions, Rates, DSRs, ISRs, SMRs and Means, including confidence intervals for these statistics, and a function for assigning data to quantiles.  
+This is an R package to support analysts in the execution of statistical methods approved for use in the production of PHE indicators such as those presented via Fingertips.  It provides functions for the generation of Proportions, Rates, DSRs, ISRs, SMRs, Means, Life Expectancy and Slope Index of Inequaltiy including confidence intervals for these statistics, and a function for assigning data to quantiles.  
 
 Any feedback would be appreciated and can be provided using the Issues section of the GitHub repository https://github.com/PublicHealthEngland/PHEindicatormethods, or by emailing PHDS@phe.gov.uk
 

README.md

@@ -7,7 +7,7 @@
 PHEindicatormethods
 ===================
 
-This is an R package to support analysts in the execution of statistical methods approved for use in the production of PHE indicators such as those presented via Fingertips. It provides functions for the generation of Proportions, Rates, DSRs, ISRs, SMRs and Means, including confidence intervals for these statistics, and a function for assigning data to quantiles.
+This is an R package to support analysts in the execution of statistical methods approved for use in the production of PHE indicators such as those presented via Fingertips. It provides functions for the generation of Proportions, Rates, DSRs, ISRs, SMRs, Means, Life Expectancy and Slope Index of Inequaltiy including confidence intervals for these statistics, and a function for assigning data to quantiles.
 
 Any feedback would be appreciated and can be provided using the Issues section of the GitHub repository <https://github.com/PublicHealthEngland/PHEindicatormethods>, or by emailing <PHDS@phe.gov.uk>
 

cran-comments.md

@@ -1,30 +1,24 @@
 
-## Resubmission
-I have amended the description text in the DESCRIPTION file to include doi 
-<doi:10.prefix.suffix> or 
-ISBN references to the statistical methods used by the package functions. 
-I also made the description text more concise.
+## First submission of updated package version 1.1.1
+This package release v1.1.1 replaces the previous release v1.0.8 currently available on CRAN
 
-I also updated one of the references cited in the function documentation for 
-the phe_rate, phe_isr and phe_smr functions.
+## Amendments in this version
+3 new functions have been added:  
 
-This package is new to CRAN.
+* phe_quantiles
+* phe_life_expectancy
+* phe_sii
 
-## Description
-This is an R package to support analysts in the execution of statistical methods approved for
-use in the production of PHE indicators such as those presented via Fingertips. It provides
-functions for the generation of Proportions, Rates, DSRs, ISRs, SMRs and Means including
-confidence intervals for these statistics.
+Also, minor amendments to existing functions.  These may result in backwards incompatibility - the circumstances when this may occur are clearly stated in the NEWS.md file and in the function documentation with solutions for how to make old code compatible with the later package version (eg logical 'percentage' argument replaced with numeric 'multiplier' argument - percentage = TRUE equivalent to multiplier = 100 etc).
 
 ## Test Environments
-* local Windows 7 install, R 3.5.1
-* local windows 10 install, R 3.5.1
-* used Travis to check on Linux (2018-7-11)
-* devtools::build_win() generated 1 note (2018-07-06)
+* local windows 10 install, R 3.5.1, 2019-04-17 - OK
+* used Travis to check on Linux (2019-04-17) - passed
+* devtools::check_win gave 1 NOTE when run on development R 3.6.0 beta, 
+release R 3.5.3 and oldrelease R 3.4.4 on 2019-04-17.  The note related to either possible misspellings or possible invalid urls containing spaces but both are OK.
 
 ## R CMD check results
-There were no ERRORs or WARNINGs.
-R CMD check generated one note (because this is a new package).
+There were no ERRORs, WARNINGS or NOTES.
 
 ## Downstream dependencies
-This is a new package so there are no downstream dependencies
+There are no known downstream dependencies