Tetranscripts
is a package for including transposable elements in differential enrichment analysis of sequencing datasets.
For more information, please check its website: https://biocontainers.pro/tools/tetranscripts and its home page on Github.
- 2.2.1
- TEtranscripts
- TEcount
You can load the modules by:
module load biocontainers module load tetranscripts
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Tetranscripts on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH --job-name=tetranscripts #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers tetranscripts TEtranscripts --format BAM --mode multi \ -t treatment_sample1.bam treatment_sample2.bam treatment_sample3.bam \ -c control_sample1.bam control_sample2.bam control_sample3.bam \ --GTF genic-GTF-file \ --GTF genic-GTF-file \ --project sample_nosort_test