Introduction ~~~~~~~~ Fasta3 is a suite of programs for searching nucleotide or protein databases with a query sequence.
For more information, please check its website: https://biocontainers.pro/tools/fasta3 and its home page on Github.
- 36.3.8
Commands ~~~~~~~ - fasta36 - fastf36 - fastm36 - fasts36 - fastx36 - fasty36 - ggsearch36 - glsearch36 - lalign36 - ssearch36 - tfastf36 - tfastm36 - tfasts36 - tfastx36 - tfasty36
You can load the modules by:
module load biocontainers
module load fasta3Example job ~~~~~ .. warning:: Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Fasta3 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fasta3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers fasta3
fasta36 input.fasta genome.fasta