IQ-TREE
is an efficient phylogenomic software by maximum likelihood.
For more information, please check its website: https://biocontainers.pro/tools/iqtree and its home page: http://www.iqtree.org.
- 1.6.12
- 2.1.2
- 2.2.0_beta
- 2.2.2.2
- iqtree
You can load the modules by:
module load biocontainers module load iqtree
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run IQ-TREE on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH --job-name=iqtree #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers iqtree iqtree -s input.phy -m GTR+I+G > test.out