metilene.rst

Metilene

Introduction ~~~~~~~~ Metilene is a versatile tool to study the effect of epigenetic modifications in differentiation/development, tumorigenesis, and systems biology on a global, genome-wide level.

For more information, please check:
BioContainers: https://biocontainers.pro/tools/metilene
Home page: https://www.bioinf.uni-leipzig.de/Software/metilene/

Versions

• 0.2.8

Commands ~~~~~~~ - metilene - metilene_input.pl - metilene_output.pl - metilene_output.R

Module

You can load the modules by:

module load biocontainers
module load metilene

Example job ~~~~~ .. warning:: Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run metilene on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=metilene
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers metilene

metilene -a g1 -b g2 methylation-file