Ncbi-genome-download
is a script to download genomes from the NCBI FTP servers.
For more information, please check its website: https://biocontainers.pro/tools/ncbi-genome-download and its home page on Github.
- 0.3.1
- ncbi-genome-download
You can load the modules by:
module load biocontainers module load ncbi-genome-download
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Ncbi-genome-download on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 4 #SBATCH --job-name=ncbi-genome-download #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers ncbi-genome-download ncbi-genome-download bacteria,viral --parallel 4 ncbi-genome-download --genera "Streptomyces coelicolor,Escherichia coli" bacteria ncbi-genome-download --species-taxids 562 bacteria