Trnascan-se
is a convenient, ready-for-use means to identify tRNA genes in one or more query sequences.
For more information, please check its website: https://biocontainers.pro/tools/trnascan-se and its home page: http://lowelab.ucsc.edu/tRNAscan-SE/.
- 2.0.9
- tRNAscan-SE
You can load the modules by:
module load biocontainers module load trnascan-se
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Trnascan-se on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 12 #SBATCH --job-name=trnascan-se #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers trnascan-se tRNAscan-SE --thread 12 -o tRNA.out \ -f rRNA.ss -m tRNA.stats genome.fasta