weblogo.rst

Weblogo

Introduction ~~~~~~~~ Weblogo is a web based application designed to make the generation of sequence logos as easy and painless as possible.

For more information, please check its website: https://biocontainers.pro/tools/weblogo and its home page: http://weblogo.threeplusone.com.

Versions

• 3.7.8

Commands ~~~~~~~ - weblogo

Module

You can load the modules by:

module load biocontainers
module load weblogo

Example job ~~~~~ .. warning:: Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Weblogo on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name 
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=weblogo
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers weblogo

weblogo --resolution 600 --format PNG \
     <seq.fasta >logo.png