Introduction ~~~~~~~~ Paml
is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.
For more information, please check its website: https://biocontainers.pro/tools/paml and its home page: http://abacus.gene.ucl.ac.uk/software/paml.html.
- 4.9
Commands ~~~~~~~ - baseml - basemlg - chi2 - codeml - evolver - infinitesites - mcmctree - pamp - yn00
You can load the modules by:
module load biocontainers
module load paml
Example job ~~~~~ .. warning:: Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Paml on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=paml
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers paml