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memory.py
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/
memory.py
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import os
import subprocess
from collections import OrderedDict
from subprocess import PIPE
from typing import Tuple, Dict, Union, List, Any
import numpy as np
import torch
import torch.nn as nn
from torch.utils.hooks import RemovableHandle
from pytorch_lightning.utilities import NATIVE_AMP_AVALAIBLE
from pytorch_lightning.utilities.apply_func import apply_to_collection
PARAMETER_NUM_UNITS = [" ", "K", "M", "B", "T"]
UNKNOWN_SIZE = "?"
class LayerSummary(object):
"""
Summary class for a single layer in a :class:`~pytorch_lightning.core.lightning.LightningModule`.
It collects the following information:
- Type of the layer (e.g. Linear, BatchNorm1d, ...)
- Input shape
- Output shape
- Number of parameters
The input and output shapes are only known after the example input array was
passed through the model.
Example::
>>> model = torch.nn.Conv2d(3, 8, 3)
>>> summary = LayerSummary(model)
>>> summary.num_parameters
224
>>> summary.layer_type
'Conv2d'
>>> output = model(torch.rand(1, 3, 5, 5))
>>> summary.in_size
[1, 3, 5, 5]
>>> summary.out_size
[1, 8, 3, 3]
Args:
module: A module to summarize
"""
def __init__(self, module: nn.Module):
super().__init__()
self._module = module
self._hook_handle = self._register_hook()
self._in_size = None
self._out_size = None
def __del__(self):
self.detach_hook()
def _register_hook(self) -> RemovableHandle:
"""
Registers a hook on the module that computes the input- and output size(s) on the first forward pass.
If the hook is called, it will remove itself from the from the module, meaning that
recursive models will only record their input- and output shapes once.
Return:
A handle for the installed hook.
"""
def hook(module, inp, out):
if len(inp) == 1:
inp = inp[0]
self._in_size = parse_batch_shape(inp)
self._out_size = parse_batch_shape(out)
self._hook_handle.remove()
return self._module.register_forward_hook(hook)
def detach_hook(self):
"""
Removes the forward hook if it was not already removed in the forward pass.
Will be called after the summary is created.
"""
if self._hook_handle is not None:
self._hook_handle.remove()
@property
def in_size(self) -> Union[str, List]:
return self._in_size or UNKNOWN_SIZE
@property
def out_size(self) -> Union[str, List]:
return self._out_size or UNKNOWN_SIZE
@property
def layer_type(self) -> str:
""" Returns the class name of the module. """
return str(self._module.__class__.__name__)
@property
def num_parameters(self) -> int:
""" Returns the number of parameters in this module. """
return sum(np.prod(p.shape) for p in self._module.parameters())
class ModelSummary(object):
"""
Generates a summary of all layers in a :class:`~pytorch_lightning.core.lightning.LightningModule`.
Args:
model: The model to summarize (also referred to as the root module)
mode: Can be one of
- `top` (default): only the top-level modules will be recorded (the children of the root module)
- `full`: summarizes all layers and their submodules in the root module
The string representation of this summary prints a table with columns containing
the name, type and number of parameters for each layer.
The root module may also have an attribute ``example_input_array`` as shown in the example below.
If present, the root module will be called with it as input to determine the
intermediate input- and output shapes of all layers. Supported are tensors and
nested lists and tuples of tensors. All other types of inputs will be skipped and show as `?`
in the summary table. The summary will also display `?` for layers not used in the forward pass.
Example::
>>> import pytorch_lightning as pl
>>> class LitModel(pl.LightningModule):
...
... def __init__(self):
... super().__init__()
... self.net = nn.Sequential(nn.Linear(256, 512), nn.BatchNorm1d(512))
... self.example_input_array = torch.zeros(10, 256) # optional
...
... def forward(self, x):
... return self.net(x)
...
>>> model = LitModel()
>>> ModelSummary(model, mode='top') # doctest: +NORMALIZE_WHITESPACE
| Name | Type | Params | In sizes | Out sizes
------------------------------------------------------------
0 | net | Sequential | 132 K | [10, 256] | [10, 512]
>>> ModelSummary(model, mode='full') # doctest: +NORMALIZE_WHITESPACE
| Name | Type | Params | In sizes | Out sizes
--------------------------------------------------------------
0 | net | Sequential | 132 K | [10, 256] | [10, 512]
1 | net.0 | Linear | 131 K | [10, 256] | [10, 512]
2 | net.1 | BatchNorm1d | 1 K | [10, 512] | [10, 512]
"""
MODE_TOP = "top"
MODE_FULL = "full"
MODE_DEFAULT = MODE_TOP
MODES = [MODE_FULL, MODE_TOP]
def __init__(self, model, mode: str = MODE_DEFAULT):
self._model = model
self._mode = mode
self._layer_summary = self.summarize()
@property
def named_modules(self) -> List[Tuple[str, nn.Module]]:
if self._mode == ModelSummary.MODE_FULL:
mods = self._model.named_modules()
mods = list(mods)[1:] # do not include root module (LightningModule)
elif self._mode == ModelSummary.MODE_TOP:
# the children are the top-level modules
mods = self._model.named_children()
else:
mods = []
return list(mods)
@property
def layer_names(self) -> List[str]:
return list(self._layer_summary.keys())
@property
def layer_types(self) -> List[str]:
return [layer.layer_type for layer in self._layer_summary.values()]
@property
def in_sizes(self) -> List:
return [layer.in_size for layer in self._layer_summary.values()]
@property
def out_sizes(self) -> List:
return [layer.out_size for layer in self._layer_summary.values()]
@property
def param_nums(self) -> List[int]:
return [layer.num_parameters for layer in self._layer_summary.values()]
def summarize(self) -> Dict[str, LayerSummary]:
summary = OrderedDict((name, LayerSummary(module)) for name, module in self.named_modules)
if self._model.example_input_array is not None:
self._forward_example_input()
for layer in summary.values():
layer.detach_hook()
return summary
def _forward_example_input(self) -> None:
""" Run the example input through each layer to get input- and output sizes. """
model = self._model
trainer = self._model.trainer
input_ = model.example_input_array
input_ = model.transfer_batch_to_device(input_, model.device)
if trainer is not None and trainer.use_amp and not trainer.use_tpu:
if NATIVE_AMP_AVALAIBLE:
model.forward = torch.cuda.amp.autocast()(model.forward)
mode = model.training
model.eval()
with torch.no_grad():
# let the model hooks collect the input- and output shapes
if isinstance(input_, (list, tuple)):
model(*input_)
elif isinstance(input_, dict):
model(**input_)
else:
model(input_)
model.train(mode) # restore mode of module
def __str__(self):
"""
Makes a summary listing with:
Layer Name, Layer Type, Number of Parameters, Input Sizes, Output Sizes
"""
arrays = [
[" ", list(map(str, range(len(self._layer_summary))))],
["Name", self.layer_names],
["Type", self.layer_types],
["Params", list(map(get_human_readable_count, self.param_nums))],
]
if self._model.example_input_array is not None:
arrays.append(["In sizes", self.in_sizes])
arrays.append(["Out sizes", self.out_sizes])
return _format_summary_table(*arrays)
def __repr__(self):
return str(self)
def parse_batch_shape(batch: Any) -> Union[str, List]:
if hasattr(batch, "shape"):
return list(batch.shape)
if isinstance(batch, (list, tuple)):
shape = [parse_batch_shape(el) for el in batch]
return shape
return UNKNOWN_SIZE
def _format_summary_table(*cols) -> str:
"""
Takes in a number of arrays, each specifying a column in
the summary table, and combines them all into one big
string defining the summary table that are nicely formatted.
"""
n_rows = len(cols[0][1])
n_cols = 1 + len(cols)
# Get formatting width of each column
col_widths = []
for c in cols:
col_width = max(len(str(a)) for a in c[1]) if n_rows else 0
col_width = max(col_width, len(c[0])) # minimum length is header length
col_widths.append(col_width)
# Formatting
s = "{:<{}}"
total_width = sum(col_widths) + 3 * n_cols
header = [s.format(c[0], l) for c, l in zip(cols, col_widths)]
# Summary = header + divider + Rest of table
summary = " | ".join(header) + "\n" + "-" * total_width
for i in range(n_rows):
line = []
for c, l in zip(cols, col_widths):
line.append(s.format(str(c[1][i]), l))
summary += "\n" + " | ".join(line)
return summary
def get_memory_profile(mode: str) -> Union[Dict[str, int], Dict[int, int]]:
""" Get a profile of the current memory usage.
Args:
mode: There are two modes:
- 'all' means return memory for all gpus
- 'min_max' means return memory for max and min
Return:
A dictionary in which the keys are device ids as integers and
values are memory usage as integers in MB.
If mode is 'min_max', the dictionary will also contain two additional keys:
- 'min_gpu_mem': the minimum memory usage in MB
- 'max_gpu_mem': the maximum memory usage in MB
"""
memory_map = get_gpu_memory_map()
if mode == "min_max":
min_index, min_memory = min(memory_map.items(), key=lambda item: item[1])
max_index, max_memory = max(memory_map.items(), key=lambda item: item[1])
memory_map = {"min_gpu_mem": min_memory, "max_gpu_mem": max_memory}
return memory_map
def get_gpu_memory_map() -> Dict[str, int]:
"""Get the current gpu usage.
Return:
A dictionary in which the keys are device ids as integers and
values are memory usage as integers in MB.
"""
result = subprocess.run(
["nvidia-smi", "--query-gpu=memory.used", "--format=csv,nounits,noheader",],
encoding="utf-8",
# capture_output=True, # valid for python version >=3.7
stdout=PIPE,
stderr=PIPE, # for backward compatibility with python version 3.6
check=True,
)
# Convert lines into a dictionary
gpu_memory = [int(x) for x in result.stdout.strip().split(os.linesep)]
gpu_memory_map = {f"gpu_{index}": memory for index, memory in enumerate(gpu_memory)}
return gpu_memory_map
def get_human_readable_count(number: int) -> str:
"""
Abbreviates an integer number with K, M, B, T for thousands, millions,
billions and trillions, respectively.
Examples:
>>> get_human_readable_count(123)
'123 '
>>> get_human_readable_count(1234) # (one thousand)
'1 K'
>>> get_human_readable_count(2e6) # (two million)
'2 M'
>>> get_human_readable_count(3e9) # (three billion)
'3 B'
>>> get_human_readable_count(4e12) # (four trillion)
'4 T'
>>> get_human_readable_count(5e15) # (more than trillion)
'5,000 T'
Args:
number: a positive integer number
Return:
A string formatted according to the pattern described above.
"""
assert number >= 0
labels = PARAMETER_NUM_UNITS
num_digits = int(np.floor(np.log10(number)) + 1 if number > 0 else 1)
num_groups = int(np.ceil(num_digits / 3))
num_groups = min(num_groups, len(labels)) # don't abbreviate beyond trillions
shift = -3 * (num_groups - 1)
number = number * (10 ** shift)
index = num_groups - 1
return f"{int(number):,d} {labels[index]}"