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tests.yml
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name: Tests
on:
push:
branches:
- v1.**
pull_request:
branches:
- main
- v1.**
concurrency:
# avoid duplicate runs on both pushes and PRs
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
# Coloured output for GitHub Actions
FORCE_COLOR: 3
# Some common environment variables for both GNU/Linux and macOS jobs
MPLBACKEND: Agg
CYTHON_TRACE: 1
CYTHONSPEC: cython
NUMPY_MIN: numpy==1.23.0
CYTHON_MIN: cython==3.0.4
SCIPY_MIN: scipy==1.9.0
jobs:
test_pywavelets_linux:
name: linux-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }}
runs-on: ubuntu-latest
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12"]
MINIMUM_REQUIREMENTS: [0]
USE_SCIPY: [0]
USE_SDIST: [0]
REFGUIDE_CHECK: [1]
PIP_FLAGS: [""]
OPTIONS_NAME: ["default"]
include:
- platform_id: manylinux_x86_64
python-version: "3.10"
MINIMUM_REQUIREMENTS: 1
OPTIONS_NAME: "minimum-req"
- platform_id: manylinux_x86_64
python-version: "3.10"
USE_SCIPY: 1
OPTIONS_NAME: "with-scipy"
- platform_id: manylinux_x86_64
python-version: "3.10"
USE_SDIST: 1
OPTIONS_NAME: "install-from-sdist"
- platform_id: manylinux_x86_64
python-version: "3.12"
PIP_FLAGS: "--pre"
OPTIONS_NAME: "pre-releases"
- platform_id: manylinux_x86_64
python-version: "3.12"
OPTIONS_NAME: "editable-install"
steps:
- name: Checkout PyWavelets
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version}}
allow-prereleases: true
- name: Build package
env:
VERSION: ${{ matrix.python-version }}
MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }}
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_SDIST: ${{ matrix.USE_SDIST }}
USE_SCIPY: ${{ matrix.USE_SCIPY }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
OPTIONS_NAME: ${{ matrix.OPTIONS_NAME }}
run: |
uname -a
df -h
ulimit -a
# ccache -s
which python
python --version
# sudo apt-get install libatlas-base-dev
pip install --upgrade pip build
# Set numpy version first, other packages link against it
if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then
pip install ${CYTHON_MIN}
pip install ${NUMPY_MIN}
if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi
else
pip install ${PIP_FLAGS} cython
pip install ${PIP_FLAGS} numpy
if [ "${USE_SCIPY}" == "1" ]; then pip install ${PIP_FLAGS} scipy; fi
fi
pip install ${PIP_FLAGS} matplotlib pytest
set -o pipefail
if [ "${USE_SDIST}" == "1" ]; then
python -m build --sdist
pip install dist/pyw*.tar.gz -v
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
pip install sphinx numpydoc scipy-doctest
pip install . -v
else
pip install . -v
fi
if [ "${OPTIONS_NAME}" == "editable-install" ]; then
pip install meson-python>=0.16.0 matplotlib pytest ninja
pip install -e . --no-build-isolation
fi
- name: Run tests
env:
USE_SDIST: ${{ matrix.USE_SDIST }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
OPTIONS_NAME: ${{ matrix.OPTIONS_NAME }}
run: |
set -o pipefail
# Move out of source directory to avoid finding local pywt
pushd demo
if [ "${USE_SDIST}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
# doctest docstrings
pytest --doctest-modules --pyargs pywt -v --doctest-collect=api
# Run Sphinx HTML docs builder, converting warnings to errors
# Move back out of demo/ to root directory
cd ..
pip install -r util/readthedocs/requirements.txt
sphinx-build -b html -W --keep-going -d _build/doctrees doc/source doc/build
else
pytest --pyargs pywt
fi
popd
test_pywavelets_linux_free_threaded:
name: linux-cp313t-with-scipy
runs-on: ubuntu-latest
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
steps:
- name: Checkout PyWavelets
uses: actions/checkout@v4
# TODO: replace with setup-python when there is support
- uses: deadsnakes/action@6c8b9b82fe0b4344f4b98f2775fcc395df45e494 # v3.1.0
with:
python-version: "3.13-dev"
nogil: true
- name: Build package
run: |
which python
python --version
pip install --upgrade pip build
# We need nightly wheels for free-threaded support and latest fixes
pip install --pre -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple cython numpy scipy
pip install pytest meson-python ninja
pip install . -v --no-build-isolation
- name: Run tests
env:
PYTHON_GIL: 0
run: |
# Move out of source directory to avoid finding local pywt
cd demo
pytest --pyargs pywt
test_pywavelets_macos:
name: macos-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }}
runs-on: macos-latest
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
python-version: ["3.10", "3.12"]
MINIMUM_REQUIREMENTS: [0]
USE_SCIPY: [0]
USE_SDIST: [0]
REFGUIDE_CHECK: [0]
PIP_FLAGS: [""]
OPTIONS_NAME: ["default"]
include:
- python-version: "3.10"
MINIMUM_REQUIREMENTS: 1
OPTIONS_NAME: "osx-minimum-req"
- python-version: "3.12"
PIP_FLAGS: "--pre"
OPTIONS_NAME: "pre-releases"
steps:
- name: Checkout PyWavelets
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version}}
allow-prereleases: true
- name: Build package
env:
VERSION: ${{ matrix.python-version }}
MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }}
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_SDIST: ${{ matrix.USE_SDIST }}
USE_SCIPY: ${{ matrix.USE_SCIPY }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
CC: /usr/bin/clang
CXX: /usr/bin/clang++
run: |
uname -a
df -h
ulimit -a
which python
python --version
pip install --upgrade pip build
# Set numpy version first, other packages link against it
if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then
pip install ${CYTHON_MIN} ${NUMPY_MIN}
if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi
else
pip install ${PIP_FLAGS} cython numpy
if [ "${USE_SCIPY}" == "1" ]; then pip install ${PIP_FLAGS} scipy; fi
fi
pip install ${PIP_FLAGS} matplotlib pytest
set -o pipefail
if [ "${USE_SDIST}" == "1" ]; then
python -m build --sdist
pip install pywavelets* -v
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
pip install sphinx numpydoc scipy-doctest
pip install . -v
else
pip install . -v
fi
- name: Run tests
env:
PIP_FLAGS: ${{ matrix.PIP_FLAGS }}
USE_SDIST: ${{ matrix.USE_SDIST }}
REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }}
run: |
# Move out of source directory to avoid finding local pywt
pushd demo
if [ "${USE_SDIST}" == "1" ]; then
pytest --pyargs pywt
python ../pywt/tests/test_doc.py
elif [ "${REFGUIDE_CHECK}" == "1" ]; then
# doctests docstrings
pytest --doctest-modules --pyargs pywt -v --doctest-collect=api
pytest --doctest-modules --pyargs pywt.data -v
else
pytest --pyargs pywt
fi
popd