Formatting_PDGWAS.log

nohup: ignoring input
Loading required package: BSgenome
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:data.table':

    first, second

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:data.table':

    shift

Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: rtracklayer
-- Attaching packages --------------------------------------- tidyverse 1.2.1 --
v ggplot2 3.2.1     v purrr   0.3.2
v tibble  2.1.3     v dplyr   0.8.3
v tidyr   1.0.0     v stringr 1.4.0
v readr   1.3.1     v forcats 0.4.0
-- Conflicts ------------------------------------------ tidyverse_conflicts() --
x ggplot2::Position() masks BiocGenerics::Position(), base::Position()
x dplyr::between()    masks data.table::between()
x dplyr::collapse()   masks Biostrings::collapse(), IRanges::collapse()
x dplyr::combine()    masks BiocGenerics::combine()
x purrr::compact()    masks XVector::compact()
x dplyr::desc()       masks IRanges::desc()
x tidyr::expand()     masks S4Vectors::expand()
x dplyr::filter()     masks stats::filter()
x dplyr::first()      masks S4Vectors::first(), data.table::first()
x dplyr::lag()        masks stats::lag()
x dplyr::last()       masks data.table::last()
x purrr::reduce()     masks GenomicRanges::reduce(), IRanges::reduce()
x dplyr::rename()     masks S4Vectors::rename()
x dplyr::slice()      masks XVector::slice(), IRanges::slice()
x purrr::transpose()  masks data.table::transpose()
[1] "Formatting PD GWAS"
Warning message:
Column `CHR` joining factor and character vector, coercing into character vector 
[1] "Formatting PD AOO GWAS"
Warning message:
Column `CHR` joining factor and character vector, coercing into character vector