ModuleNotFoundError: No module named 'scipy.fftpack._fftpack #293

trichter · 2023-02-20T09:33:40Z

I get the following error when running msnoise test with msnoise=1.6.3 scipy=1.10.0

(skience23) eule@kiste:~/tmp$ msnoise test
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23/bin/msnoise", line 6, in <module>
    from msnoise.scripts.msnoise import run
  File "/home/eule/anaconda/envs/skience23/lib/python3.10/site-packages/msnoise/scripts/msnoise.py", line 12, in <module>
    from ..api import connect, get_config, update_station, get_logger, get_job_types
  File "/home/eule/anaconda/envs/skience23/lib/python3.10/site-packages/msnoise/api.py", line 31, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

The text was updated successfully, but these errors were encountered:

ThomasLecocq · 2023-02-20T09:34:45Z

yup, for skience we will make use of the master/ or msnoise2 branch, which correct this

ThomasLecocq · 2023-02-20T09:37:30Z

pip uninstall msnoise
pip install http://msnoise.org/master.zip

trichter · 2023-02-20T09:38:46Z

Perfect, you are aware of it.

trichter · 2023-02-20T09:56:11Z

Import is working with msnoise-master.
With

pip install git+https://github.com/ROBelgium/MSNoise.git

you'll get a correct version number (not 0.0.0).

Some test cases still fail, fyi.

======================================================================
ERROR: test_013_s03compute_cc (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 203, in test_013_s03compute_cc
    from ..s03compute_no_rotation import main
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/s03compute_no_rotation.py", line 201, in <module>
    from .move2obspy import myCorr2
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/move2obspy.py", line 9, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

======================================================================
ERROR: test_018_recompute_cc (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 256, in test_018_recompute_cc
    self.test_013_s03compute_cc()
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 203, in test_013_s03compute_cc
    from ..s03compute_no_rotation import main
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/s03compute_no_rotation.py", line 201, in <module>
    from .move2obspy import myCorr2
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/move2obspy.py", line 9, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

======================================================================
ERROR: test_020_update_config (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 264, in test_020_update_config
    shutil.rmtree("STACKS")
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/shutil.py", line 715, in rmtree
    onerror(os.lstat, path, sys.exc_info())
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/shutil.py", line 713, in rmtree
    orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: 'STACKS'

======================================================================
ERROR: test_021_reprocess_BOTH (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 271, in test_021_reprocess_BOTH
    self.test_013_s03compute_cc()
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 203, in test_013_s03compute_cc
    from ..s03compute_no_rotation import main
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/s03compute_no_rotation.py", line 201, in <module>
    from .move2obspy import myCorr2
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/move2obspy.py", line 9, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

======================================================================
ERROR: test_022_check_content (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 301, in test_022_check_content
    tmp1 = read(tmp1)
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/decorator.py", line 232, in fun
    return caller(func, *(extras + args), **kw)
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/obspy/core/util/decorator.py", line 297, in _map_example_filename
    return func(*args, **kwargs)
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/obspy/core/stream.py", line 208, in read
    st = _generic_reader(pathname_or_url, _read, **kwargs)
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/obspy/core/util/base.py", line 656, in _generic_reader
    raise IOError(2, "No such file or directory", pathname)
FileNotFoundError: [Errno 2] No such file or directory: 'STACKS/01/001_DAYS/ZZ/YA.UV05.00_YA.UV06.00/2010-09-01.MSEED'

======================================================================
ERROR: test_024_mwcs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 324, in test_024_mwcs
    from ..s05compute_mwcs import main
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/s05compute_mwcs.py", line 76, in <module>
    from .move2obspy import mwcs
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/move2obspy.py", line 9, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

======================================================================
ERROR: test_030_instrument_response (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 392, in test_030_instrument_response
    self.test_013_s03compute_cc()
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 203, in test_013_s03compute_cc
    from ..s03compute_no_rotation import main
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/s03compute_no_rotation.py", line 201, in <module>
    from .move2obspy import myCorr2
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/move2obspy.py", line 9, in <module>
    import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

======================================================================
FAIL: test_014_check_done_jobs (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 219, in test_014_check_done_jobs
    self.failUnlessEqual(jobs[0][1], 'D')
AssertionError: 'T' != 'D'
- T
+ D


======================================================================
FAIL: test_015_check_cc_files (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 241, in test_015_check_cc_files
    self.fail()
AssertionError: None

======================================================================
FAIL: test_019_check_SACS (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 259, in test_019_check_SACS
    self.test_015_check_cc_files(format='SAC')
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 241, in test_015_check_cc_files
    self.fail()
AssertionError: None

======================================================================
FAIL: test_029_create_fake_new_files (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 378, in test_029_create_fake_new_files
    self.failUnlessEqual(jobs[0][0], 3)
AssertionError: 6 != 3

======================================================================
FAIL: test_100_plot_cctfime (msnoise.test.tests.MSNoiseTests)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/eule/anaconda/envs/skience23b/lib/python3.10/site-packages/msnoise/test/tests.py", line 421, in test_100_plot_cctfime
    self.assertTrue(os.path.isfile(fn), msg="%s doesn't exist" % fn)
AssertionError: False is not true : ccftime YA.UV05.00-YA.UV06.00-ZZ-f1-m1.png doesn't exist

----------------------------------------------------------------------
Ran 52 tests in 23.843s

FAILED (failures=5, errors=7)

ThomasLecocq · 2023-02-20T09:58:58Z

ok thanks, I might have to cherry pick the right changes in the branch to master - job for today or later

ThomasLecocq · 2023-02-20T10:20:45Z

rah, it's just because of the version string comparison that fails:
if scipy.__version__ < "1.4.0":

ThomasLecocq · 2023-02-20T10:24:48Z

89c4984

trichter · 2023-02-20T10:55:10Z

👍 easy to fix

ThomasLecocq · 2023-02-20T10:56:13Z

still considering releasing 2.0 before the school :)

sukranperk · 2023-10-24T09:51:09Z

ı have the same problem

when ı do;

pip install msnoise
I get the following error
Traceback (most recent call last):
File "/home/hp/prog/prog/bin/msnoise", line 6, in
from msnoise.scripts.msnoise import run
File "/home/hp/prog/prog/lib/python3.11/site-packages/msnoise/scripts/msnoise.py", line 12, in
from ..api import connect, get_config, update_station, get_logger, get_job_types
File "/home/hp/prog/prog/lib/python3.11/site-packages/msnoise/api.py", line 31, in
import scipy.fftpack._fftpack as sff
ModuleNotFoundError: No module named 'scipy.fftpack._fftpack'

but when ı do this
pip install http://msnoise.org/master.zip and write msnoise test
Again I have an error

home/hp/prog/prog/envs/msnoise/lib/python3.8/site-packages/msnoise/_version.py:153: UserWarning: msnoise could not determine its version number. Make sure it is properly installed. This for example happens when installing from a zip archive of the msnoise repository which is not a supported way of installing msnoise.
warnings.warn("msnoise could not determine its version number. Make "
/home/hp/prog/prog/envs/msnoise/lib/python3.8/site-packages/msnoise/_version.py:153: UserWarning: msnoise could not determine its version number. Make sure it is properly installed. This for example happens when installing from a zip archive of the msnoise repository which is not a supported way of installing msnoise.
warnings.warn("msnoise could not determine its version number. Make "
Usage: msnoise [OPTIONS] COMMAND [ARGS]...
Try 'msnoise --help' for help.

What should ı do ?

ThomasLecocq · 2023-10-24T09:58:58Z

please don't re-open closed issues.

as said in numerous other issues/comments , the documentation for the new dev version (which includes the command changes) is available at http://msnoise.org/doc/master.

ThomasLecocq closed this as completed Oct 24, 2023

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ModuleNotFoundError: No module named 'scipy.fftpack._fftpack #293

ModuleNotFoundError: No module named 'scipy.fftpack._fftpack #293

trichter commented Feb 20, 2023 •

edited

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023 •

edited

trichter commented Feb 20, 2023

trichter commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

trichter commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

sukranperk commented Oct 24, 2023

ThomasLecocq commented Oct 24, 2023

ModuleNotFoundError: No module named 'scipy.fftpack._fftpack #293

ModuleNotFoundError: No module named 'scipy.fftpack._fftpack #293

Comments

trichter commented Feb 20, 2023 • edited

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023 • edited

trichter commented Feb 20, 2023

trichter commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

trichter commented Feb 20, 2023

ThomasLecocq commented Feb 20, 2023

sukranperk commented Oct 24, 2023

ThomasLecocq commented Oct 24, 2023

trichter commented Feb 20, 2023 •

edited

ThomasLecocq commented Feb 20, 2023 •

edited