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Merge code_docker_lib into this repo #15

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cmball1 opened this issue Mar 18, 2021 · 2 comments
Open
3 of 4 tasks

Merge code_docker_lib into this repo #15

cmball1 opened this issue Mar 18, 2021 · 2 comments
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@cmball1
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cmball1 commented Mar 18, 2021

  • Archive code_docker_lib. All updates should be in this repo. ` should be used as the new source of truth.
  • Add missing docker images.
  • Compare existing images.
  • Verify all images in rticode Docker Hub are built and exist in rtibiocloud from Dockerfile's in this repo.
@cmball1 cmball1 self-assigned this Mar 18, 2021
@cmball1
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cmball1 commented Mar 18, 2021

The following Dockerfile's were compared, the following were found to have no functional differences:

bcftools
bedops
convert_to_1000g_ids
fastqc
hisat2
add_pos_info_to_sumstats_by_rsid
generate_ld_regression_input_json
plot_ld_regression_results
ldsc
metal
multiqc
plink
regtools
rseqc
rvtests
salmon
samtools
structure
trimmomatic
ucsc_utils

Dockerfile's with functional differences:

adjust_csv_pvalue - Script was added to different file path in Dockerfile
htslib - Different CMD's. code version not in WDL.

@cmball1
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cmball1 commented Mar 18, 2021

Added the follow missing images:

bedtools
bicmix
deseq2
dexseq - v3.9 existing (v1.39), add v3.11
drimseq
edger
eigenmt
eigensoft
epidish
extract_by_id
fastqtl
fgwas
htseq
matrix_eqtl
merge_salmon_quant
metaxcan
prepare_metaxcan_input
minimac4
peer
plier
qc_parser
rediscoverte
salmonte
wgcna

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