-
Notifications
You must be signed in to change notification settings - Fork 0
/
workflow.drawio
82 lines (82 loc) · 12.1 KB
/
workflow.drawio
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
<mxfile host="65bd71144e">
<diagram id="H3tnomoDhOJxsfFKKW_9" name="Page-1">
<mxGraphModel dx="703" dy="470" grid="1" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" page="1" pageScale="1" pageWidth="140" pageHeight="150" background="#ffffff" math="0" shadow="0">
<root>
<mxCell id="0"/>
<mxCell id="1" parent="0"/>
<mxCell id="39" value="" style="group" vertex="1" connectable="0" parent="1">
<mxGeometry x="10" y="10" width="544" height="440" as="geometry"/>
</mxCell>
<mxCell id="35" value="" style="group" vertex="1" connectable="0" parent="39">
<mxGeometry width="544" height="440" as="geometry"/>
</mxCell>
<mxCell id="3" value="<span style="background-color: rgb(255, 255, 255);"><font style="font-size: 18px;"><u>Workflow</u></font></span>" style="swimlane;childLayout=stackLayout;horizontal=1;fillColor=none;horizontalStack=1;resizeParent=1;resizeParentMax=0;resizeLast=0;collapsible=0;strokeColor=none;stackBorder=10;stackSpacing=-12;resizable=1;align=center;points=[];whiteSpace=wrap;html=1;fillStyle=solid;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="35">
<mxGeometry width="544" height="110" as="geometry"/>
</mxCell>
<mxCell id="4" value="<div>Retrieve filtered</div><div>.csv-file from</div><div>DeepLabCut</div>" style="shape=step;perimeter=stepPerimeter;fixedSize=1;points=[];whiteSpace=wrap;html=1;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;fillColor=#FFFFFF;" vertex="1" parent="3">
<mxGeometry x="10" y="33" width="140" height="67" as="geometry"/>
</mxCell>
<mxCell id="8" value="<div>Use outlier</div><div>correction script in</div><div>R Studio or other IDE</div>" style="shape=step;perimeter=stepPerimeter;fixedSize=1;points=[];whiteSpace=wrap;html=1;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;fillColor=#FFFFFF;" vertex="1" parent="3">
<mxGeometry x="138" y="33" width="140" height="67" as="geometry"/>
</mxCell>
<mxCell id="10" value="<div>Read-in and analyze</div><div>corrected .csv-file</div><div>with the main script</div>" style="shape=step;perimeter=stepPerimeter;fixedSize=1;points=[];whiteSpace=wrap;html=1;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;fillColor=#FFFFFF;" vertex="1" parent="3">
<mxGeometry x="266" y="33" width="140" height="67" as="geometry"/>
</mxCell>
<mxCell id="9" value="<div>Optionally generate</div><div>graphs with the</div><div>main script</div>" style="shape=step;perimeter=stepPerimeter;fixedSize=1;points=[];whiteSpace=wrap;html=1;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;fillColor=#FFFFFF;" vertex="1" parent="3">
<mxGeometry x="394" y="33" width="140" height="67" as="geometry"/>
</mxCell>
<mxCell id="11" value="<b>Tracked Points include:</b>" style="swimlane;fontStyle=0;childLayout=stackLayout;horizontal=1;startSize=26;fillColor=#FFFFFF;horizontalStack=0;resizeParent=1;resizeParentMax=0;resizeLast=0;collapsible=1;marginBottom=0;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="35">
<mxGeometry x="10" y="160" width="140" height="196" as="geometry"/>
</mxCell>
<mxCell id="12" value="<div>Left Eye, Right Eye, Snout, Belly, Back,&nbsp;</div><div>Left Fore Paw,</div><div>Right Fore Paw,&nbsp;</div><div>Left Hind Paw,&nbsp;</div><div>Right Hind Paw,&nbsp;</div><div>Tail Base, Center &amp; Tip,</div><div>Left (Stop) Marking,</div><div>Right (Start) Marking,</div><div>Left Beam Top,&nbsp;</div><div>Right Beam Top</div>" style="text;strokeColor=none;fillColor=#FFFFFF;align=left;verticalAlign=top;spacingLeft=4;spacingRight=4;overflow=hidden;rotatable=0;points=[[0,0.5],[1,0.5]];portConstraint=eastwest;whiteSpace=wrap;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="11">
<mxGeometry y="26" width="140" height="170" as="geometry"/>
</mxCell>
<mxCell id="15" value="<b>Raw Statistical Values</b>" style="swimlane;fontStyle=0;childLayout=stackLayout;horizontal=1;startSize=26;fillColor=#FFFFFF;horizontalStack=0;resizeParent=1;resizeParentMax=0;resizeLast=0;collapsible=1;marginBottom=0;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="35">
<mxGeometry x="160" y="160" width="226" height="130" as="geometry"/>
</mxCell>
<mxCell id="16" value="<div style=""><font style="font-size: 12px;"><font style="font-size: 12px;">Mean &amp; Standard Error of Mean</font><br></font></div><div style=""><font style="font-size: 12px;">Number of Mice (N)</font></div><div style=""><font style="font-size: 12px;">Number of Trials (ntrials)</font></div><div style=""><font style="font-size: 12px;">Number of Frames (nframes)</font></div><div style=""><font style="font-size: 12px;">p-Values of a few Statical Tests</font></div><div style=""><font style="font-size: 12px;">Velocity</font></div>" style="text;strokeColor=none;fillColor=#FFFFFF;align=center;verticalAlign=top;spacingLeft=4;spacingRight=4;overflow=hidden;rotatable=0;points=[[0,0.5],[1,0.5]];portConstraint=eastwest;whiteSpace=wrap;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="15">
<mxGeometry y="26" width="226" height="104" as="geometry"/>
</mxCell>
<mxCell id="25" value="" style="group" vertex="1" connectable="0" parent="35">
<mxGeometry x="394" y="160" width="140" height="130" as="geometry"/>
</mxCell>
<mxCell id="23" value="<b>Potential Graphics</b>" style="swimlane;fontStyle=0;childLayout=stackLayout;horizontal=1;startSize=26;fillColor=#FFFFFF;horizontalStack=0;resizeParent=1;resizeParentMax=0;resizeLast=0;collapsible=1;marginBottom=0;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;container=0;" vertex="1" parent="25">
<mxGeometry width="140" height="130" as="geometry"/>
</mxCell>
<mxCell id="24" value="<div style=""><div style="text-align: justify;">Line of Walking Pattern</div><div style="text-align: justify;"><br></div><div style="text-align: justify;">Boxplots &amp;&nbsp;Density Plots of&nbsp; analytical&nbsp; &nbsp;components</div></div><div style="text-align: justify;">with&nbsp; statistical&nbsp; &nbsp;tests&nbsp; &nbsp;and</div><div style="text-align: justify;">p-Values</div>" style="text;strokeColor=none;fillColor=#FFFFFF;align=left;verticalAlign=top;spacingLeft=4;spacingRight=4;overflow=hidden;rotatable=0;points=[[0,0.5],[1,0.5]];portConstraint=eastwest;whiteSpace=wrap;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="25">
<mxGeometry y="26" width="140" height="104" as="geometry"/>
</mxCell>
<mxCell id="26" value="" style="endArrow=classic;html=1;fontFamily=Times New Roman;fontSize=11;fontColor=#000000;strokeColor=#000000;" edge="1" parent="35" source="9" target="23">
<mxGeometry width="50" height="50" relative="1" as="geometry">
<mxPoint x="420" y="230" as="sourcePoint"/>
<mxPoint x="470" y="160" as="targetPoint"/>
</mxGeometry>
</mxCell>
<mxCell id="31" value="" style="endArrow=classic;html=1;fontFamily=Times New Roman;fontSize=11;fontColor=#000000;entryX=0.5;entryY=0;entryDx=0;entryDy=0;strokeColor=#000000;" edge="1" parent="35" target="11">
<mxGeometry width="50" height="50" relative="1" as="geometry">
<mxPoint x="80" y="100" as="sourcePoint"/>
<mxPoint x="80" y="160" as="targetPoint"/>
</mxGeometry>
</mxCell>
<mxCell id="32" value="" style="endArrow=classic;html=1;fontFamily=Times New Roman;fontSize=11;fontColor=#000000;entryX=0.5;entryY=0;entryDx=0;entryDy=0;exitX=0.456;exitY=1.013;exitDx=0;exitDy=0;exitPerimeter=0;strokeColor=#000000;" edge="1" parent="35" source="10" target="15">
<mxGeometry width="50" height="50" relative="1" as="geometry">
<mxPoint x="340" y="110" as="sourcePoint"/>
<mxPoint x="484" y="180" as="targetPoint"/>
</mxGeometry>
</mxCell>
<mxCell id="40" style="edgeStyle=none;html=1;entryX=0.5;entryY=0;entryDx=0;entryDy=0;strokeColor=#000000;fontFamily=Times New Roman;fontSize=11;fontColor=#000000;" edge="1" parent="35" source="4" target="11">
<mxGeometry relative="1" as="geometry"/>
</mxCell>
<mxCell id="38" value="" style="group" vertex="1" connectable="0" parent="39">
<mxGeometry x="160" y="290" width="226" height="140" as="geometry"/>
</mxCell>
<mxCell id="22" value="<div style=""><font style="font-size: 12px;">Compare BAS to Researcher</font></div><div style=""><font style="font-size: 12px;">Major Slip Score</font></div><div style=""><font style="font-size: 12px;">Minor Slip Score</font></div><div style=""><font style="font-size: 11px;">Probability of tracked body part displacement</font></div><div style=""><font style="font-size: 12px;">Tail Base Angle</font></div><div style=""><font style="font-size: 12px;">Detect Stationary Phases</font></div><div style=""><font style="font-size: 12px;">Animal Size</font></div>" style="text;strokeColor=none;fillColor=#FFFFFF;align=center;verticalAlign=top;spacingLeft=4;spacingRight=4;overflow=hidden;rotatable=0;points=[[0,0.5],[1,0.5]];portConstraint=eastwest;whiteSpace=wrap;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;fontFamily=Times New Roman;fontColor=#000000;container=1;" vertex="1" parent="38">
<mxGeometry y="26" width="226" height="114" as="geometry"/>
</mxCell>
<mxCell id="21" value="<b>Analytical Components</b>" style="swimlane;fontStyle=0;childLayout=stackLayout;horizontal=1;startSize=26;fillColor=#FFFFFF;horizontalStack=0;resizeParent=1;resizeParentMax=0;resizeLast=0;collapsible=1;marginBottom=0;html=1;labelBackgroundColor=#FFFFFF;fillStyle=solid;strokeColor=#000000;fontFamily=Times New Roman;fontColor=#000000;" vertex="1" parent="38">
<mxGeometry width="226" height="140" as="geometry"/>
</mxCell>
</root>
</mxGraphModel>
</diagram>
</mxfile>