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AutoEverything2.sh
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AutoEverything2.sh
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# ====================================================================
# Functionally Encrypted Datatores - Implementation for project eprint.iacr.org/2019/1262
# Copyright (C) 2019 Rachit Garg Nishant Kumar
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
# ====================================================================
#
#
#!/bin/bash
# declare -a dataSizes=("5000" "10000" "15000" "20000" "25000")
declare -a dataSizes=("20000" "40000" "60000" "80000" "100000")
# declare -a dataSizes=("10000000")
declare -a dataSizesSmall=("400" "800" "1200" "1600" "2000")
declare -a snpSizes=("50" "50" "50" "50" "50")
declare -a appAreas=("MAF" "ChiSq" "Hamming")
locfilter=100
numdb=5
numAppAreas=1
numq=10
randomOrConstantQ=constant #constant or random
gendata=true
remlogs=false
runSetup=true
runSingleDO=true
runOPRF=true
runEQCheck=true
checkcorrect=true
Totalwd=$(pwd)
Codewd=$Totalwd/Code
CodeExpwd=$Totalwd/Code_Experiments/final
rundir=$2
tcpport=$3
if [ "$#" -lt 3 ]; then
echo "Illegal number of parameters"
exit
fi
echo "Creating Dummy directories for experiments"
mkdir -p $rundir/src/keys $rundir/src/DB $rundir/src/EDB $rundir/data/split $rundir/ideallogs $rundir/reallogs
cd $rundir
cd reallogs
mkdir -p SingleDO MultiDO
cd SingleDO
mkdir -p correctnesslog errorlog log relevantlog
cd ../MultiDO
mkdir -p OPRF EqCheck
cd OPRF
mkdir -p correctnesslog errorlog log relevantlog
cd ../EqCheck
mkdir -p correctnesslog errorlog log relevantlog
cd $rundir
runOnSmallDb=true
if [ "$1" == "Big" ];
then
runOnSmallDb=false
else
runOnSmallDb=true
fi
echo -e "*******Simulating Network*******"
# $Totalwd/simulateWAN.sh
# cd Code_Experiments/final
echo -e "*******Setting config parameter in new directory*******"
$CodeExpwd/Areas $locfilter > PossibleAreas.txt
cp $CodeExpwd/PossibleSexes.txt PossibleSexes.txt
cp $Codewd/paths.config $rundir
cp $Codewd/src/keys/* $rundir/src/keys
echo -e "*******Starting experiments now*******"
appAreasct=0
while [ $appAreasct -lt $numAppAreas ] && $gendata
do
curAppArea=${appAreas["$appAreasct"]}
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
echo "MaxSampleSize="$curDataSize"" > config.txt
echo "MaxNumSNPs="$curSnpSize"" >> config.txt
$CodeExpwd/generate_data_random config.txt "$curAppArea" ./data/output_"$curDataSize"_"$curSnpSize"_"$curAppArea" 1
((ct++))
done
$CodeExpwd/generate_query "$numq" config.txt "$curAppArea" "$randomOrConstantQ" > queries_"$curAppArea".txt
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
# echo -e "./compute_stats ./data/output_"$curDataSize"_"$curSnpSize"_"$curAppArea"0.txt queries_"$curAppArea".txt "$curAppArea""
$CodeExpwd/compute_stats ./data/output_"$curDataSize"_"$curSnpSize"_"$curAppArea"0.txt queries_"$curAppArea".txt "$curAppArea" | grep "\[Ans\]: " > ideallogs/output_"$curDataSize"_"$curSnpSize"_"$curAppArea"0
((ct++))
done
((appAreasct++))
done
if $remlogs;
then
rm ideallogs/*
fi
appAreasct=0
while [ $appAreasct -lt $numAppAreas ] && $runSingleDO
do
curAppArea=${appAreas["$appAreasct"]}
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
echo -e "\n************STARTING************\n"
date
echo -e "CurAppArea, CurDataSize, CurSnpSize = "$curAppArea" "$curDataSize" "$curSnpSize""
fileSuffix="$curDataSize"_"$curSnpSize"_"$curAppArea"0
logFilePrefix="reallogs/SingleDO/log/log_"$fileSuffix""
relevantLogFilePrefix="reallogs/SingleDO/relevantlog/log_"$fileSuffix""
errorLogFilePrefix="reallogs/SingleDO/errorlog/log_"$fileSuffix""
correctLogFilePrefix="reallogs/SingleDO/correctnesslog/log_"$fileSuffix""
if $runSetup;
then
echo -e "Starting Setup"
if [ "$curAppArea" == "AddHom" ];
then
$Codewd/bin/SSE $tcpport 0 "$curAppArea" ./data/output_"$curDataSize"_"$curSnpSize"_MAF0.txt >"$logFilePrefix"_setup 2>"$errorLogFilePrefix"_setup
else
$Codewd/bin/SSE $tcpport 0 "$curAppArea" ./data/output_"$fileSuffix".txt >"$logFilePrefix"_setup 2>"$errorLogFilePrefix"_setup
fi
cat "$logFilePrefix"_setup | grep -E '^(\[Final SE\]|\[Final IP\]|\[Final ValueRet\]|\[Final Hamm\])' > "$relevantLogFilePrefix"_setup
fi
date
echo -e "Starting other entities"
$Codewd/bin/SSE $tcpport 1 "$curAppArea" >"$logFilePrefix"_Server 2>"$errorLogFilePrefix"_Server &
sleep 3
$Codewd/bin/SSE $tcpport 2 "$curAppArea" >"$logFilePrefix"_AuxServer 2>"$errorLogFilePrefix"_AuxServer &
sleep 3
if [ "$curAppArea" == "AddHom" ];
then
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_MAF.txt >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
else
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_"$curAppArea".txt >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
fi
wait
echo -e "All entities done"
cat "$logFilePrefix"_Server | grep -E '(\[Server SE|\[Server DCFE|\[Final OblivC|\[Final Hamm|\[Final Data)' > "$relevantLogFilePrefix"_Server
cat "$logFilePrefix"_AuxServer | grep -E '(\[Authority SE|\[Authority DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_AuxServer
cat "$logFilePrefix"_Client | grep -E '(\[Client SE|\[Client DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_Client
if [ "$curAppArea" == "Hamming" ];
then
logtoread="Server"
else
logtoread="Client"
fi
cat "$logFilePrefix"_"$logtoread" | grep "\[Ans\]: " > "$correctLogFilePrefix"
echo -e "\n##############DONE##############\n"
((ct++))
done
((appAreasct++))
done
appAreasct=0
while [ $appAreasct -lt $numAppAreas ] && $runOPRF
do
curAppArea=${appAreas["$appAreasct"]}
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
echo -e "\n************STARTING************\n"
date
echo -e "CurAppArea, CurDataSize, CurSnpSize = "$curAppArea" "$curDataSize" "$curSnpSize""
fileSuffix="$curDataSize"_"$curSnpSize"_"$curAppArea"0
logFilePrefix="reallogs/MultiDO/OPRF/log/mDOOPRF_log_"$fileSuffix""
relevantLogFilePrefix="reallogs/MultiDO/OPRF/relevantlog/mDOOPRF_log_"$fileSuffix""
errorLogFilePrefix="reallogs/MultiDO/OPRF/errorlog/mDOOPRF_log_"$fileSuffix""
correctLogFilePrefix="reallogs/MultiDO/OPRF/correctnesslog/log_"$fileSuffix""
echo -e "---------->Starting collect phase"
echo -e "--->Starting server"
$Codewd/bin/SSE $tcpport 7 "$curAppArea" collect >"$logFilePrefix"_collect_Server 2>"$errorLogFilePrefix"_collect_Server &
sleep 3
echo -e "--->Starting DO"
if [ "$curAppArea" == "AddHom" ];
then
curGenomeFileName=output_"$curDataSize"_"$curSnpSize"_MAF0.txt
else
curGenomeFileName=output_"$fileSuffix".txt
fi
$Codewd/bin/SSE $tcpport 6 "$curAppArea" ./data/"$curGenomeFileName" 0 >"$logFilePrefix"_collect_DO 2>"$errorLogFilePrefix"_collect_DO
wait
echo -e "---------->Starting merge stage"
echo -e "--->Starting server"
$Codewd/bin/SSE $tcpport 7 "$curAppArea" merge 1 >"$logFilePrefix"_merge_Server 2>"$errorLogFilePrefix"_merge_Server &
sleep 3
echo -e "--->Starting AuxServer"
$Codewd/bin/SSE $tcpport 8 "$curAppArea" merge 1 >"$logFilePrefix"_merge_AuxServer 2>"$errorLogFilePrefix"_merge_AuxServer
wait
date
echo -e "---------->Starting normal init phase"
$Codewd/bin/SSE $tcpport 0 "$curAppArea" ./data/"$curGenomeFileName" 1 >"$logFilePrefix"_setup 2>"$errorLogFilePrefix"_setup
echo -e "---------->Starting Query Phase"
echo -e "--->Starting Server"
$Codewd/bin/SSE $tcpport 1 "$curAppArea" 1 >"$logFilePrefix"_Server 2>"$errorLogFilePrefix"_Server &
sleep 3
echo -e "--->Starting AuxServer"
$Codewd/bin/SSE $tcpport 2 "$curAppArea" 1 >"$logFilePrefix"_AuxServer 2>"$errorLogFilePrefix"_AuxServer &
sleep 3
echo -e "--->Starting Client"
if [ "$curAppArea" == "AddHom" ];
then
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_MAF.txt 1 >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
else
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_"$curAppArea".txt 1 >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
fi
wait
echo -e "All entities done. Finding and dumping relevant logs."
cat "$logFilePrefix"_collect_Server | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_collect_Server
cat "$logFilePrefix"_collect_DO | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_collect_DO
cat "$logFilePrefix"_merge_Server | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_merge_Server
cat "$logFilePrefix"_merge_AuxServer | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_merge_AuxServer
cat "$logFilePrefix"_setup | grep -E '^(\[Final SE\]|\[Final IP\]|\[Final ValueRet\]|\[Final Hamm\])' > "$relevantLogFilePrefix"_setup
cat "$logFilePrefix"_Server | grep -E '(\[Server SE|\[Server DCFE|\[Final OblivC|\[Final Hamm|\[Final Data)' > "$relevantLogFilePrefix"_Server
cat "$logFilePrefix"_AuxServer | grep -E '(\[Authority SE|\[Authority DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_AuxServer
cat "$logFilePrefix"_Client | grep -E '(\[Client SE|\[Client DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_Client
if [ "$curAppArea" == "Hamming" ];
then
logtoread="Server"
else
logtoread="Client"
fi
cat "$logFilePrefix"_"$logtoread" | grep "\[Ans\]: " > "$correctLogFilePrefix"
echo -e "\n##############DONE##############\n"
((ct++))
done
((appAreasct++))
done
appAreasct=0
while [ $appAreasct -lt $numAppAreas ] && $runEQCheck
do
curAppArea=${appAreas["$appAreasct"]}
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
echo -e "\n************STARTING************\n"
date
echo -e "CurAppArea, CurDataSize, CurSnpSize = "$curAppArea" "$curDataSize" "$curSnpSize""
fileSuffix="$curDataSize"_"$curSnpSize"_"$curAppArea"0
logFilePrefix="reallogs/MultiDO/EqCheck/log/mDOEq_log_"$fileSuffix""
relevantLogFilePrefix="reallogs/MultiDO/EqCheck/relevantlog/mDOEq_log_"$fileSuffix""
errorLogFilePrefix="reallogs/MultiDO/EqCheck/errorlog/mDOEq_log_"$fileSuffix""
correctLogFilePrefix="reallogs/MultiDO/EqCheck/correctnesslog/log_"$fileSuffix""
echo -e "---------->Starting DO for eq check phase"
echo -e "--->Starting DO"
if [ "$curAppArea" == "AddHom" ];
then
curGenomeFileName=output_"$curDataSize"_"$curSnpSize"_MAF0.txt
else
curGenomeFileName=output_"$fileSuffix".txt
fi
$Codewd/bin/SSE $tcpport 10 "$curAppArea" ./data/"$curGenomeFileName" 0 >"$logFilePrefix"_collect_DO 2>"$errorLogFilePrefix"_collect_DO
echo -e "---------->Starting merge stage"
echo -e "--->Starting server"
$Codewd/bin/SSE $tcpport 11 "$curAppArea" merge 1 >"$logFilePrefix"_merge_Server 2>"$errorLogFilePrefix"_merge_Server &
sleep 3
echo -e "--->Starting AuxServer"
$Codewd/bin/SSE $tcpport 12 "$curAppArea" merge 1 >"$logFilePrefix"_merge_AuxServer 2>"$errorLogFilePrefix"_merge_AuxServer
wait
date
echo -e "---------->Starting normal init phase"
$Codewd/bin/SSE $tcpport 0 "$curAppArea" ./data/"$curGenomeFileName" 2 >"$logFilePrefix"_setup 2>"$errorLogFilePrefix"_setup
echo -e "---------->Starting Query Phase"
echo -e "--->Starting Server"
$Codewd/bin/SSE $tcpport 1 "$curAppArea" 2 >"$logFilePrefix"_Server 2>"$errorLogFilePrefix"_Server &
sleep 3
echo -e "--->Starting AuxServer"
$Codewd/bin/SSE $tcpport 2 "$curAppArea" 2 >"$logFilePrefix"_AuxServer 2>"$errorLogFilePrefix"_AuxServer &
sleep 3
echo -e "--->Starting Client"
if [ "$curAppArea" == "AddHom" ];
then
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_MAF.txt 2 >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
else
$Codewd/bin/SSE $tcpport 3 "$curAppArea" queries_"$curAppArea".txt 2 >"$logFilePrefix"_Client 2>"$errorLogFilePrefix"_Client
fi
wait
echo -e "All entities done. Finding and dumping relevant logs."
cat "$logFilePrefix"_collect_DO | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_collect_DO
cat "$logFilePrefix"_merge_Server | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_merge_Server
cat "$logFilePrefix"_merge_AuxServer | grep -E '(\[Output Comm:\]|\[Output Time:\])' > "$relevantLogFilePrefix"_merge_AuxServer
cat "$logFilePrefix"_setup | grep -E '^(\[Final SE\]|\[Final IP\]|\[Final ValueRet\]|\[Final Hamm\])' > "$relevantLogFilePrefix"_setup
cat "$logFilePrefix"_Server | grep -E '(\[Server SE|\[Server DCFE|\[Final OblivC|\[Final Hamm|\[Final Data)' > "$relevantLogFilePrefix"_Server
cat "$logFilePrefix"_AuxServer | grep -E '(\[Authority SE|\[Authority DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_AuxServer
cat "$logFilePrefix"_Client | grep -E '(\[Client SE|\[Client DCFE|\[Final OblivC|\[Final Hamm)' > "$relevantLogFilePrefix"_Client
if [ "$curAppArea" == "Hamming" ];
then
logtoread="Server"
else
logtoread="Client"
fi
cat "$logFilePrefix"_"$logtoread" | grep "\[Ans\]: " > "$correctLogFilePrefix"
echo -e "\n##############DONE##############\n"
((ct++))
done
((appAreasct++))
done
echo -e "*******Evaluation Complete. Fixing network bandwidth and latency.*******"
# $Totalwd/fixnetworksimulate.sh
echo -e "*******Checking Computation now*******"
python3 $Codewd/CheckForAnyErrorsInLogFiles.py reallogs/SingleDO/errorlog
python3 $Codewd/CheckForAnyErrorsInLogFiles.py reallogs/MultiDO/OPRF/errorlog
python3 $Codewd/CheckForAnyErrorsInLogFiles.py reallogs/MultiDO/EqCheck/errorlog
appAreasct=0
while [ $appAreasct -lt $numAppAreas ] && $checkcorrect
do
curAppArea=${appAreas["$appAreasct"]}
ct=0
while [ $ct -lt $numdb ]
do
if [ "$runOnSmallDb" = true ];
then
curDataSize=${dataSizesSmall["$ct"]}
else
curDataSize=${dataSizes["$ct"]}
fi
curSnpSize=${snpSizes["$ct"]}
echo -e "\n************STARTING CHECKING************\n"
date
echo -e "CurAppArea, CurDataSize, CurSnpSize = "$curAppArea" "$curDataSize" "$curSnpSize""
fileSuffix="$curDataSize"_"$curSnpSize"_"$curAppArea"0
correctLogFile1="reallogs/SingleDO/correctnesslog/log_"$fileSuffix""
correctLogFile2="reallogs/MultiDO/OPRF/correctnesslog/log_"$fileSuffix""
correctLogFile3="reallogs/MultiDO/EqCheck/correctnesslog/log_"$fileSuffix""
correctLogFileIdeal="ideallogs/output_"$fileSuffix""
echo -e "SingleDO Correctness"
if cmp -s "$correctLogFile1" "$correctLogFileIdeal" ; then
echo "CORRECTNESS PASSED"
else
echo "CHECK IF VALUES ONLY DIFFER BY THEIR PRECISION"
fi
echo -e "MultiDO OPRF Correctness"
if cmp -s "$correctLogFile2" "$correctLogFileIdeal" ; then
echo "CORRECTNESS PASSED"
else
echo "CHECK IF VALUES ONLY DIFFER BY THEIR PRECISION"
fi
echo -e "MultiDO EqCheck Correctness"
if cmp -s "$correctLogFile3" "$correctLogFileIdeal" ; then
echo "CORRECTNESS PASSED"
else
echo "CHECK IF VALUES ONLY DIFFER BY THEIR PRECISION"
fi
((ct++))
done
((appAreasct++))
done