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echoR.yml
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echoR.yml
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name: echoR
channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
# Python
- python>=3.6.1
- pandas>=0.25.0
- fastparquet
- pyarrow
- scipy
- scikit-learn
- tqdm
- bitarray
- networkx
- rpy2
- requests
# Command line
- htslib
- plink
- bcftools
- wget
- axel
# R
- r>=4.1.0
- r-devtools
- r-susier
- r-reticulate
- r-rlang
- r-mvtnorm
- r-desctools
- r-exact
- r-later
- r-commonmark
- r-patchwork
- r-r.methodss3
- r-brew
- r-zip
- r-xfun
- r-credentials
- r-whisker
- r-gh
- r-xopen
- r-sessioninfo
- r-promises
- r-rex
- r-crosstalk
- r-roxygen2
- r-gert
- r-r.oo
- r-rversions
- r-rcmdcheck
- r-dt
- r-covr
- r-usethis
- r-openxlsx
- r-r.utils
- r-data.table
- r-ggplot2
- r-ckmeans.1d.dp
- r-tidyverse
- r-foreign
- r-refgenome
- r-xgr
- r-coloc
- r-susier
### There's also this implementation of susieR which includes later versions
# - aksarkar::r-susier
- r-biocmanager
- bioconductor-snpstats
- bioconductor-ggbio
- bioconductor-ensdb.hsapiens.v75
- bioconductor-biomart
- radian
- pip