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environment2UI.js
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environment2UI.js
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//Convert nutrient structure to ui & ui to nutrient structure
var av = av || {}; // variable exists; this just lets the ide konw that av is defnined
var dijit = dijit || {}; //variable exists; this just lets the ide konw that dijit is defnined
//Find subarea based on inflow x, y coordinates
// this function does not appear to be called
//--------------------------------------------------------------------------------------- av.env.getInflowAreaResrc --
av.env.getInflowAreaResrc = function(numTsk, subnum) {
//console.log('in av.env.getInflowAreaResrc: numTsk=', numTsk, '; subnum=', subnum);
var area = 1;
var corner = '';
var coordinates = {};
var labels = ['inflowx1', 'inflowx2', 'inflowy1', 'inflowy2'];
var len = labels.length;
if (null != av.nut[numTsk].uiSub.regionNdx[subnum]) {
if (0 <= av.nut[numTsk].uiSub.regionNdx[subnum] && av.nut[numTsk].uiSub.regionNdx[subnum] < av.sgr.regionQuarterCodes.length) {
for (var ndx = 0; ndx < len; ndx++) {
corner = labels[ndx];
//console.log('corner=', corner, '; av.nut['+numTsk+'].resrc['+corner+']['+subnum+']=', av.nut[numTsk].resrc[corner][subnum]);
if (NaN == Number(av.nut[numTsk].resrc[corner][subnum])) {
coordinates[labels[0]] = 0;
}
else {
coordinates[corner] = Number(av.nut[numTsk].resrc[corner][subnum]);
}
}
//console.log('coordinates=',coordinates);
var subCols = Math.abs( coordinates.inflowx2 - coordinates.inflowx1 ) + 1;
var subRows = Math.abs( coordinates.inflowy2 - coordinates.inflowy1 ) + 1;
area = subCols * subRows;
console.log('numTsk=', numTsk, 'subnum=', subnum, '; cols=', subCols, '; rows=', subRows, '; area=', area);
return (area);
}
else {
console.log('Error: problem with av.nut['+numTsk+'].uiSub.regionNdx['+subnum+']=', av.nut[numTsk].uiSub.regionNdx[subnum]);
return (1);
}
}
};
//----------------------------------------------------------------------------------- end av.env.getInflowAreaResrc --
//-------------------------------------------------------------------------------------- av.env.findReactOnlyUIdata --
av.env.findReactOnlyUIdata = function(numTsk, sub) {
//console.log('in av.env.findReactOnlyUIdata: numTsk=', numTsk, '; sub=', sub, '?????????????????????');
if (0 != sub) { console.log('Reaction only Data should position 0 in the array, sub = ', sub); }
else {
//reaction but no resource so it must be global and none or unlimited
av.nut[numTsk].uiAll.geometry = 'global';
av.nut[numTsk].uiAll.regionLayout = '1Global';
av.nut[numTsk].uiSub.regionCode[sub] = '100';
av.nut[numTsk].uiSub.regionName[sub] = 'Global Dish';
av.nut[numTsk].uiSub.regionNdx[sub] = 0;
av.nut[numTsk].uiSub.regionSet[sub] = 'q';
av.nut[numTsk].uiAll.regionsNumOf = 1;
if (0 < av.nut[numTsk].react.value[sub]) {
av.nut[numTsk].uiAll.supplyTypeSlct = 'unlimited';
//if (av.dbg.flg.nut) { console.log('av.nut['+numTsk+'].uiAll.supplyTypeSlct =', av.nut[numTsk].uiAll.supplyTypeSlct); }
}
else if (0 > av.nut[numTsk].react.value[sub]) {
av.nut[numTsk].uiAll.supplyTypeSlct = 'poison'; //poison or damage. does not kill, but hurts energy aquisition rate (ear).
}
else if (0 == av.nut[numTsk].react.value[sub]) {
av.nut[numTsk].uiAll.supplyTypeSlct = 'none';
//if (av.dbg.flg.nut) { console.log('av.nut['+numTsk+'].uiAll.supplyTypeSlct =', av.nut[numTsk].uiAll.supplyTypeSlct); }
}
else { console.log('should not be here'); }
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = av.nut[numTsk].uiAll.supplyTypeSlct;
//console.log('findReactOnlyUIdata: numTsk=', numTsk, '; sub=', sub, '; uiAll=', av.nut[numTsk].uiAll);
//console.log('uiSub=', av.nut[numTsk].uiSub);
}
};
//---------------------------------------------------------------------------------- end av.env.findReactOnlyUIdata --
//---------------------------------------------------------------------------------------- av.env.resourceNameMatch --
av.env.resourceNameMatch = function(numTsk, sub) {
var matchStatus = 'unknown';
if ( null == av.nut[numTsk].react.resource[sub] ) {
matchStatus = 'undefined';
av.nut[numTsk].react.resource[sub] = 'missing';
};
//console.log('av.env.resourceNameMatch: av.nut['+numTsk+'].react.resource['+sub+']=', av.nut[numTsk].react.resource[sub]);
if ( 'missing' === av.nut[numTsk].react.resource[sub] ) {
matchStatus = 'missing';
}
else {
// There is should be a RESOURCE statement; look for a match
// make sure react.resource matches resrc.name
//console.log('av.nut['+numTsk+'].resrc.name=', av.nut[numTsk].resrc.name);
ndx = av.nut[numTsk].resrc.name.indexOf(av.nut[numTsk].react.resource[sub]);
//console.log('av.nut['+numTsk+'].react.resource['+sub+']=', av.nut[numTsk].react.resource[sub], '; ndx=', ndx);
if (0 > ndx) {
//console.log('resrc.name not found in react.resource = ERROR------------------------ERROR');
matchStatus = 'not found';
//return matchStatus;
}
else if (ndx != sub) {
console.log('********* Name & resource should have the same index: ',
'av.nut['+numTsk+'].react.resource['+sub+']=', av.nut[numTsk].react.resource[sub],
'av.nut['+numTsk+'].resrcName['+ndx+']=', av.nut[numTsk].resrc.name[ndx],
'************');
matchStatus = 'index differs';
return matchStatus;
} else {
matchStatus = 'found';
//return matchStatus;
}
};
return matchStatus;
};
//------------------------------------------------------------------------------------ end av.env.resourceNameMatch --
//------------------------------------------------------------------------------------------------- av.env.findArea -
//
av.env.findArea = function(numTsk, sub) {
// expects a valid regionCode
var assumeUIareaValid = false;
var area = 1;
//console.log('findArea: av.nut['+numTsk+'].uiAll.geometry=', av.nut[numTsk].uiAll.geometry, '- - - - - - - - - - - - - - ');
// Only process if a REACTION statement exists;
// console.log(' av.nut['+numTsk+'].react.name['+sub+']=' + av.nut[numTsk].react.name[sub]+'_');
if (null != av.nut[numTsk].react.name[sub]) {
// check for a resource in resource
// console.log('av.nut['+numTsk+'].react.resource.['+sub+']='+ av.nut[numTsk].react.resource[sub]+'_');
if (null != av.nut[numTsk].react.resource[sub]) {
// console.log(' av.nut['+numTsk+'].resrc.name['+sub+']='+ av.nut[numTsk].resrc.name[sub]+'_');
// console.log('(av.nut[numTsk].react.resource[sub] == av.nut[numTsk].resrc.name[sub])='+(av.nut[numTsk].react.resource[sub] == av.nut[numTsk].resrc.name[sub]));
if (av.nut[numTsk].react.resource[sub] == av.nut[numTsk].resrc.name[sub]) {
resourceMatch = true;
//console.log('resourceMatch=', resourceMatch);
}
else {
av.nut[numTsk].uiAll.geometry = 'global';
av.nut[numTsk].uiSub.area[sub] = av.nut.wrldSize;
area = av.nut.wrldSize;
// console.log('av.nut['+numTsk+'].uiAll.geometry=', av.nut[numTsk].uiAll.geometry, '________________________');
console.log('Nut: REACTION statement only; av.nut['+numTsk+'].uiSub['+sub+'].area is wrldSize =', av.nut.wrldSize);
return area;
}
};
if ('global' == av.nut[numTsk].uiAll.geometry) {
av.nut[numTsk].uiSub.area[sub] = av.nut.wrldSize;
area = av.nut.wrldSize;
//console.log('Nut: RESOURCE present; area is wrldSize =', av.nut.wrldSize);
return area;
}
else {
// geometry type should be grid
// Test to see if uiSub exits and matches region code uiSub.area if assuming area is already correct
if (assumeUIareaValid) {
// not implementd as I don't expect it to exist
// verify if uiSub.area exists and is <= wrldSize
// _return_ av.nut.tsk.uiSub.sub when found and varified.
//else validUI is still false and we continue.
};
//need to define area based on inflow if it exists.
//In chemostate, inflow area matches outflow area
//console.log('av.nut['+numTsk+'].uiSub.supplyTypeSlct['+sub+']=', av.nut[numTsk].uiSub.supplyTypeSlct[sub]);
if ('chemostat' == av.nut[numTsk].uiSub.supplyTypeSlct[sub].toLowerCase()) {
//console.log('inflowx1', parseInt(av.nut[numTsk].resrc.inflowx1[sub] ) );
//console.log('inflowx1', parseInt(av.nut[numTsk].resrc.inflowx2[sub] ) );
//console.log('inflowx1', parseInt(av.nut[numTsk].resrc.inflowy1[sub] ) );
//console.log('inflowx1', parseInt(av.nut[numTsk].resrc.inflowy2[sub] ) );
if (av.utl.isNumber(parseInt(av.nut[numTsk].resrc.inflowx1[sub])) && av.utl.isNumber(parseInt(av.nut[numTsk].resrc.inflowx2[sub]))
&& av.utl.isNumber(parseInt(av.nut[numTsk].resrc.inflowy1[sub])) && av.utl.isNumber(parseInt(av.nut[numTsk].resrc.inflowy2[sub])) ) {
av.nut[numTsk].resrc.boxcol[sub] = Math.abs( 1 + Number(av.nut[numTsk].resrc.inflowx2[sub]) - Number(av.nut[numTsk].resrc.inflowx1[sub]) );
av.nut[numTsk].resrc.boxrow[sub] = Math.abs( 1 + Number(av.nut[numTsk].resrc.inflowy2[sub]) - Number(av.nut[numTsk].resrc.inflowy1[sub]) );
av.nut[numTsk].uiSub.area[sub] = av.nut[numTsk].resrc.boxcol[sub] * av.nut[numTsk].resrc.boxrow[sub];
//console.log('Nut: chemostat; use inflow coordinates - av.nut['+numTsk+'].uiSub.area['+sub+'] =', av.nut[numTsk].uiSub.area[sub]);
return (av.nut[numTsk].uiSub.area[sub]);
};
};
// Area from cellbox; supply type is none
if (av.nut[numTsk].resrc.boxflag[sub]) {
// check data then assign area based on cellbox rows & cols
if (av.utl.isNumber(parseInt(av.nut[numTsk].resrc.boxcol[sub])) && av.utl.isNumber(parseInt(av.nut[numTsk].resrc.boxrow[sub]) )
&& 0 < (parseInt(av.nut[numTsk].resrc.boxcol[sub])) && (parseInt(av.nut[numTsk].resrc.boxcol[sub])) <= av.nut.wrldSize
&& 0 < (parseInt(av.nut[numTsk].resrc.boxrow[sub])) && (parseInt(av.nut[numTsk].resrc.boxrow[sub])) <= av.nut.wrldSize) {
av.nut[numTsk].uiSub.area[sub] = parseInt(av.nut[numTsk].resrc.boxcol[sub]) * parseInt(av.nut[numTsk].resrc.boxrow[sub]);
area = av.nut[numTsk].uiSub.area[sub];
console.log('Nut: use cellbox - av.nut['+numTsk+'].uiSub.area['+sub+'] =', av.nut[numTsk].uiSub.area[sub],
'; col =', av.nut[numTsk].resrc.boxcol[sub], '; row =', av.nut[numTsk].resrc.boxrow[sub]);
return area;
}
};
// Area based on wrldSize and region definitons. This will be used in writing environment.cfg
if ( av.utl.isNumber(parseInt(av.nut[numTsk].uiSub.regionNdx[sub])) ) {
// sub regiona index exist so use that to fine area from regiona type;
ndx = parseInt(av.nut[numTsk].uiSub.regionNdx[sub]);
width = Math.floor( parseInt(av.sgr.regionQuarterCols[ndx]) * parseInt(av.nut.wrldCols) );
if ( 0 != parseInt(av.nut.wrldCols)%2 ) {
width += av.sgr.regionQuarterColsAdd; //odd number of columns add one column to
}
height = Math.floor( parseInt(av.sgr.regionQuarterRows[ndx]) * parseInt(av.nut.wrldRows) );
if (height < parseInt(av.sgr.regionQuarterRows[ndx]) * parseInt(av.nut.wrldRows)) {
height += av.sgr.regionQuarterRowsAdd;
}
//console.log('area based on world size and region definitions: Area = ', area);
area = width * height;
return area;
};
}; // region is NOT the whole dish;
}; // geometry is grid
}; // there was a react.name
//--------------------------------------------------------------------------------------------- end av.env.findArea --
//------------------------------------------------------------------------------------------- av.env.findsupplyTypeSlct --
// find some summary info about nutrients. Need to look at each task separately.
av.env.findsupplyTypeSlct = function() {
var nameMatch;
var numTsk,lenResourceInReact, sub;
var nameRCR; // name should be the same for RESPONSE, CELL, REACTION, but name or reaction matters the least.
var regionCodeGroup;
var regionCodeAry = [];
var inflowR, inflowC, initialR, initialC;
var len = av.sgr.logEdNames.length; //9
// console.log('in av.env.findsupplyTypeSlct: len=', len);
for (var ii=0; ii< len; ii++) {
numTsk = av.sgr.logEdNames[ii];
lenResourceInReact = av.nut[numTsk].react.name.length; // There is data for all reaction statements. s
//console.log('numTsk=', numTsk, '; lenRegon=', lenResourceInReact);
for (var sub=0; sub< lenResourceInReact; sub++) {
// begin of secton from reAct
//There are older environment.cfg files that do not include a resource in the reaction statement.
// All of those will be considered to have global resources and they will typically be unlimited or none.
//
// IF the code word 'missing' is the listed as the name of the resource than there is not resource specified and
// the reaction can only act as if the resource for that task is none or unlimited and it must be global.
if (null != av.nut[numTsk].react.name[sub]) {
nameRCR = av.nut[numTsk].react.name[sub];
// returns 'found' if react.resource[sub] matches resrc.react[sub];
nameMatch = av.env.resourceNameMatch(numTsk, sub);
//console.log('nameMatch=', nameMatch);
if ('missing' == nameMatch) {
// Avida Avida-ED 3 workspaces do not have Resourc statements;
// Some Avida-ED 4 workspaces are missing Resource statements;
av.env.findReactOnlyUIdata(numTsk, sub);
}
else if ('found' == nameMatch ) {
// There is a matching resource statement.
// Geometry and Region information was found in RESOURCE statment
//Find the supply type ------------------------------------------
//if (av.dbg.flg.nut) { console.log('Nut: regionCode is ', av.nut[numTsk].uiSub.regionCode[sub]); }
// Look for limited or none
// Look at RESOURCE initial first.
// console.log('av.nut['+numTsk+'].resrc.initial['+sub+']=', av.nut[numTsk].resrc.initial[sub]);
if ( av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.initial[sub])) ) {
if (0 == parseFloat(av.nut[numTsk].resrc.initial[sub]) ) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'none';
av.nut[numTsk].uiAll.supplyTypeSlct = 'none';
}
else if (0 < av.nut[numTsk].resrc.initial[sub]) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'limited';
av.nut[numTsk].uiAll.supplyTypeSlct = 'limited';
if (null == av.nut[numTsk].uiSub.area[sub]) {
av.nut[numTsk].uiSub.area[sub] = av.nut.wrldSize; //this may get redifned based on cells
//console.log('set av.nut['+numTsk+'].uiSub.area['+sub+'] to wrldSize=', av.nut.wrldSize);
}
}
};
//If there is also CELL initial, CELL over writes RESOURCE inital for Avida-ED. In avida, they are additive
if ( av.utl.isNumber(parseFloat(av.nut[numTsk].cell.initial[sub])) ) {
if (0 == parseFloat(av.nut[numTsk].cell.initial[sub]) ) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'none'; //None
av.nut[numTsk].uiAll.supplyTypeSlct = 'none';
}
else if (0 < av.nut[numTsk].cell.initial[sub]) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'limited'; //Limited
av.nut[numTsk].uiAll.supplyTypeSlct = 'limited';
if (null == av.nut[numTsk].uiSub.area[sub]) {
av.nut[numTsk].uiSub.area[sub] = av.nut.wrldSize; //this may get redifned based on cells (need to think about how to parse)
console.log('set av.nut['+numTsk+'].uiSub.area['+sub+'] to wrldSize=', av.nut.wrldSize);
}
}
av.nut[numTsk].uiAll.supplyTypeSlct = 'uiSub';
}
else if ( 1 < av.nut[numTsk].uiAll.regionsNumOf ) {
console.log('av.nut['+numTsk+'].cell.initial['+sub+']=', av.nut[numTsk].cell.initial[sub]);
};
//console.log('av.nut['+numTsk+'].resrc.inflow['+sub+']=', av.nut[numTsk].resrc.inflow[sub]);
if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.inflow[sub])) && av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.outflow[sub])) ) {
//console.log('av.nut['+numTsk+'].resrc.outflow['+sub+']=', av.nut[numTsk].resrc.outflow[sub]);
//console.log('0 < parseFloat(av.nut[numTsk].resrc.inflow[sub]) is ', (0 < parseFloat(av.nut[numTsk].resrc.inflow[sub])));
//console.log('0.0 < ' + parseFloat(av.nut[numTsk].resrc.outflow[sub])+' is ', (0.0 < parseFloat(av.nut[numTsk].resrc.outflow[sub])));
//console.log('parseFloat(av.nut[numTsk].resrc.outflow[sub]) <= 1 is ', (parseFloat(av.nut[numTsk].resrc.outflow[sub]) <= 1));
if (0 < parseFloat(av.nut[numTsk].resrc.inflow[sub]) &&
0.0 < parseFloat(av.nut[numTsk].resrc.outflow[sub]) && parseFloat(av.nut[numTsk].resrc.outflow[sub]) <= 1) {
if ('global' != av.nut[numTsk].uiAll.geometry) {
// Local (grid): if inflow and outflow xy coordinates match then it is chemostate
// inflow and outflow exist and are numbers; do the defined areas match?
//console.log('Local: av.nut['+numTsk+'].resrc.inflowx1['+sub+']=', av.nut[numTsk].resrc.inflowx1[sub]);
if (av.nut[numTsk].resrc.inflowx1[sub]===av.nut[numTsk].resrc.outflowx1[sub] && av.nut[numTsk].resrc.inflowx2[sub]===av.nut[numTsk].resrc.outflowx2[sub] &&
av.nut[numTsk].resrc.inflowy1[sub]===av.nut[numTsk].resrc.outflowy1[sub] && av.nut[numTsk].resrc.inflowy2[sub]===av.nut[numTsk].resrc.outflowy2[sub] ) {
//console.log('Local: av.nut['+numTsk+'].resrc.outflowx1['+sub+']=', av.nut[numTsk].resrc.outflowx1[sub]);
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'chemostat';
av.nut[numTsk].uiAll.supplyTypeSlct = 'chemostat';
}
else {
console.log('av.nut['+numTsk+'].resrc.inflowy1['+sub+']=', av.nut[numTsk].resrc.inflowy1[sub]);
console.log('should type flow, but we are not doing that so will force to be chemostat');
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'chemostat'; //not implemented
av.nut[numTsk].uiAll.supplyTypeSlct = 'chemostat';
};
} else {
// global no check for matching xy coordinates
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'chemostat';
av.nut[numTsk].uiAll.supplyTypeSlct = 'chemostat';
//console.log('av.nut['+numTsk+'].resrc.inflow['+sub+']=', av.nut[numTsk].resrc.inflow[sub]);
}
}; // end section where inflow and outflow have contains a numbers in the correct range
} // end of section where inflow exists and is a number
// is this needed? if needed should there be a test for null and isNaN
if (0 == av.nut[numTsk].resrc.initial[sub] && 0 == av.nut[numTsk].resrc.inflow[sub]) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'none';
av.nut[numTsk].uiAll.supplyTypeSlct = 'uiSub';
console.log('note: av.nut['+numTsk+'].resrc.initial['+sub+'] = infow = 0');
};
initialR = av.nut[numTsk].resrc.initial[sub];
initialC = av.nut[numTsk].cell.initial[sub];
inflowR = av.nut[numTsk].resrc.inflow[sub];
inflowC = av.nut[numTsk].cell.inflow[sub];
if ( (inflowR || inflowC) && (initialC || initialR) ) {
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'none';
av.nut[numTsk].uiAll.supplyTypeSlct = 'none';
console.log('numTsk=', numTsk, '; sub=', sub, '; initial R, C =' ,initialR, initialC, '; inflow R, C =', inflowR, inflowC);
}
}; // end of section based on a found resource --------------------------------------------------------------
// Check some reaction parameters that may effect the supplyTypeSlct classification
// a missing depleatable should be set to the avida default, which is one
if (null == av.nut[numTsk].react.depletable[sub]) { av.nut[numTsk].react.depletable[sub] = 1; }
// if not value declared; assume Avida-ED defaults for value
//this could be in react, but I thought of it here.
if (null == av.nut[numTsk].react.value[sub]) {
av.av.nut[numTsk].react.value[sub] = av.sgr.reactValues[ii];
};
// Depleatable set to 0 is used to make a resource unlimited
if ( 0 == Number(av.nut[numTsk].react.depletable[sub]) ) {
//console.log('av.nut['+numTsk+'].react.depletable['+sub+']=', av.nut[numTsk].react.depletable[sub]);
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'unlimited';
av.nut[numTsk].uiAll.supplyTypeSlct = 'uiSub';
};
}; // processing index into array with a reaction name
if (av.sgr.gridOnly && 'global' == av.nut[numTsk].uiAll.geometry) {
av.env.convertGlobal2grid(numTsk, sub);
};
}; // end of loop through list of subIndex with a reaction name
if (av.dbg.flg.nut) {
var endLoopSupplyTsk = {};
endLoopSupplyTsk = JSON.parse(JSON.stringify(av.nut[numTsk]));
//console.log('endLoopSupply['+numTsk+']=', endLoopSupplyTsk);
};
//-------------------
// Determine regionLayout
regionCodeAry = JSON.parse(JSON.stringify(av.nut[numTsk].uiSub.regionCode));
//console.log('av.nut['+numTsk+'].uiSub.regionCode =', av.nut[numTsk].uiSub.regionCode);
regionCodeAry.sort();
//console.log('av.nut['+numTsk+'].uiSub.regionCode.sort =', regionCodeAry);
regionCodeGroup = regionCodeAry.join();
//console.log('regionCodeGroup', regionCodeGroup);
if (null != regionCodeGroup) {
av.nut[numTsk].uiAll.regionLayout = av.sgr.regionLookup[regionCodeGroup];
//console.log('av.nut['+numTsk+'].uiAll.regionLayout=', av.nut[numTsk].uiAll.regionLayout);
} else {
console.log('Error: Why is regionCode empty? regionCode = ', av.nut[numTsk].uiSub.regionCode);
}
}; // end of logic task loops
//if (av.dbg.flg.nut) {
if (av.dbg.flg.nutSum) {
av.nutSupply = {};
av.nutSupply = JSON.parse(JSON.stringify(av.nut));
console.log('end of av.env.findsupplyTypeSlct');
console.log('av.nutSupply = ', av.nutSupply);
console.log('======================================================================================= end av.env.findsupplyTypeSlct ==');
};
};
//----------------------------------------------------------------------------------- end av.env.findsupplyTypeSlct --
//---------------------------------------------------------------------------------------------- av.env.resrc2uiSub --
// Region information was found when RESOURCE line was parced.
// Witout a RESOURSE line, geometry = global and region = 1Global
// called after supply types have been found
// moves the relevant data from resource and cell to uiSub
// for now this only works for geometry = grid
av.env.resrc2uiSub = function() {
var supplyTypeSlct = ''; var ndx;
var area = parseInt(av.nut.wrldSize);
var numTsk='', lenNames = 1, sub = 1;
var nameRCR; // name should be the same for RESPONSE, CELL, REACTION, but name or reaction matters the least.
var len = av.sgr.logEdNames.length; //9
// console.log('av.nut["4oro"].uiAll.geometry=', av.nut["4oro"].uiAll.geometry, '+++++++++++++++++ ');
//console.log('in av.env.resrc2uiSub: len=', len);
for (var ii=0; ii< len; ii++) {
numTsk = av.sgr.logEdNames[ii];
lenNames = av.nut[numTsk].resrc.name.length; // There is data for all reaction statements.
//console.log('numTsk=', numTsk, '; lenRerc.Names=', lenNames);
for (var sub=0; sub< lenNames; sub++) {
if (null != av.nut[numTsk].resrc.name[sub]) {
nameRCR = av.nut[numTsk].resrc.name[sub];
area = av.env.findArea(numTsk, sub);
//console.log('av.nut['+numTsk+'].uiAll.geometry=', av.nut[numTsk].uiAll.geometry, 'sub=', sub, '=================');
// determine diffusiont parameters
if ('grid' == av.nut[numTsk].uiAll.geometry.toLowerCase()) {
// move general data from nut.resrc
// diffusion
if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.xdiffuse[sub]))) {
if ( 0.4 < parseFloat(av.nut[numTsk].resrc.xdiffuse[sub]) ) {
av.nut[numTsk].uiSub.diffuseCheck[sub] = 1;
}
else {
av.nut[numTsk].uiSub.diffuseCheck[sub] = 0;
};
} else if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.ydiffuse[sub]))) {
if ( 0.4 < parseFloat(av.nut[numTsk].resrc.xdiffuse[sub]) ) {
av.nut[numTsk].uiSub.diffuseCheck[sub] = 1;
}
else {
av.nut[numTsk].uiSub.diffuseCheck[sub] = 0;
};
} else { av.nut[numTsk].uiSub.diffuseCheck[sub] = 1; }
} else {
// global = geometry
av.nut[numTsk].uiSub.diffuseCheck[sub] = 0;
};
// Find Supply Type
// console.log('sub=', sub, '; av.nut['+numTsk+'].uiSub.supplyTypeSlct=', av.nut[numTsk].uiSub.supplyTypeSlct);
if(null == av.nut[numTsk].uiSub.supplyTypeSlct[sub]) {
if (null != av.nut[numTsk].uiAll.supplyTypeSlct && av.sgr.supplylower.includes(av.nut[numTsk].uiAll.supplyTypeSlct)
&& '1All' == av.nut[numTsk].uiAll.regionLayout){
supplyTypeSlct = av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase();
console.log('Error: sub=', sub, 'av.nut.['+numTsk+'].uiAll=', supplyTypeSlct, 'should be from uiSub_________________________Error');
}
else {
supplyTypeSlct = 'none';
av.nut[numTsk].uiSub.supplyTypeSlct[sub] = 'none';
console.log('Error: supplyTypeSlct defined wrong: av.nut['+numTsk+'].uiSub.supplyTypeSlct['+sub+'] is null. uiAll.supplyTypeSlct='
, av.nut[numTsk].uiAll.supplyTypeSlct);
}
} else {
supplyTypeSlct = av.nut[numTsk].uiSub.supplyTypeSlct[sub].toLowerCase();
};
switch (supplyTypeSlct) {
case 'limited':
if ( av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.initial[sub])) ) {
av.nut[numTsk].uiSub.initialHiNp[sub] = parseInt(av.nut[numTsk].resrc.initial[sub]) / area;
};
// if both Cell & RESOURCE initial are defined CELL overwrites RESOURCE in Avida-ED. In avida they are addative;
if (av.utl.isNumber(parseFloat(av.nut[numTsk].cell.initial[sub])) ) {
av.nut[numTsk].uiSub.initialHiNp[sub] = parseInt(av.nut[numTsk].cell.initial[sub]);
}
else if (av.nut[numTsk].cell.initial[sub]) {
console.log('Error: av.nut['+numTsk+'].cell.initial['+sub+']=', av.nut[numTsk].cell.initial[sub],'; should be a number:______________________________ Error');
}
break;
case 'none':
av.nut[numTsk].uiSub.initialHiNp[sub] = 0;
break;
case 'chemostat':
if ( av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.inflow[sub])) ) {
av.nut[numTsk].uiSub.inflowHiNp[sub] = parseFloat(av.nut[numTsk].resrc.inflow[sub]) / area;
} else {
av.nut[numTsk].uiSub.inflowHiNp[sub] = 0.666;
console.log('av.nut['+numTsk+'].resrc.inflow['+sub+']=', av.nut[numTsk].resrc.inflow[sub]);
};
if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.outflow[sub])) ) {
av.nut[numTsk].uiSub.outflowHiNp[sub] = parseFloat(av.nut[numTsk].resrc.outflow[sub]);
} else {
av.nut[numTsk].uiSub.inflowHiNp[sub] = 0.666;
console.log('av.nut['+numTsk+'].resrc.outflow['+sub+']=', av.nut[numTsk].resrc.outflow[sub]);
};
break;
case 'unlimited':
av.nut[numTsk].uiSub.initialHiNp[sub] = 2;
break;
//
}; // end of switch statement
// global geometry
if ('global' == av.nut[numTsk].uiAll.geometry.toLowerCase() ) {
if (0 != sub) { console.log('global geometry so sub should be 0; sub=', sub); }
// console.log('sub=', sub, '; av.nut['+numTsk+'].uiSub.supplyTypeSlct=', av.nut[numTsk].uiSub.supplyTypeSlct);
if(!av.nut[numTsk].uiAll.regionLayout) {
console.log('strange: av.nut['+numTsk+'].uiAll.regionLayout=', av.nut[numTsk].uiAll.regionLayout)
av.nut[numTsk].uiAll.regionLayout = '1Global';
};
if (!av.nut[numTsk].react.name[sub]) {
console.log('Stragne: av.nut['+numTsk+'].react.name['+sub+']=', av.nut[numTsk].react.name[sub]);
av.nut[numTsk].uiAll.supplyTypeSlct = 'none';
};
//supply type specific actions
supplyTypeSlct = av.nut[numTsk].uiAll.supplyTypeSlct.toLowerCase();
switch (supplyTypeSlct) {
case 'limited':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.initial[sub])) ) {
av.nut[numTsk].uiSub.initialHiNp[sub] = parseFloat(av.nut[numTsk].resrc.initial[sub]/
parseFloat(av.nut.wrldSize));
av.nut[numTsk].uiAll.initialHiNp = parseFloat(av.nut[numTsk].resrc.initial[sub]/
parseFloat(av.nut.wrldSize)); }
break;
case 'none':
av.nut[numTsk].uiSub.initialHiNp[sub] = 0;
break;
case 'chemostat':
console.log('chemostat: av.nut['+numTsk+'].resrc.inflow['+sub+']=', av.nut[numTsk].resrc.inflow[sub], '; av.nut['+numTsk+'].uiSub.area['+sub+']=', av.nut[numTsk].uiSub.area[sub]);
if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.inflow[sub])) ) {
av.nut[numTsk].uiSub.inflowHiNp[sub] = parseFloat(av.nut[numTsk].resrc.inflow[sub]);
} else { av.nut[numTsk].uiSub.inflowHiNp[sub] = 0.555; };
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.outflowHiNp[sub])) ) {
av.nut[numTsk].uiSub.outflowHiNp[sub] = parseFloat(av.nut[numTsk].uiSub.outflowHiNp[sub]);
} else { av.nut[numTsk].uiSub.inflowHiNp[sub] = 0.111; };
break;
case 'unlimited':
av.nut[numTsk].uiSub.initialHiNp[sub] = av.sgr.nutdft.uiAll.initialHiNp;
break;
//
}; // end of switch statement
} // end of 'global' == geometry
}; // end of checking to make sure name is not null
}; // end of for subregions loop
}; // end of task loop
if (av.dbg.flg.nutSum) {
av.nutUI = {};
av.nutUI = JSON.parse(JSON.stringify(av.nut));
console.log('end of av.env.resrc2uiSub');
console.log('av.nutUI = ', av.nutUI);
console.log('============================================================================================== end av.env.resrc2uiSub ==');
}
};
//------------------------------------------------------------------------------------------ end av.env.resrc2uiSub --
//--------------------------------------------------------------------------------------- av.env.convertGlobal2grid --
// Probably will not be used now that we know the test environment works best with no resource statement.
av.env.convertGlobal2grid = function(numTsk, sub, nameMatch) {
console.log('av.env.convertGlobal2grid: numTsk=', numTsk, '; sub=', sub, '; nameMatch=', nameMatch);
if (av.dbg.flg.nut) {
var preConverTsk = {};
preConverTsk = JSON.parse(JSON.stringify(av.nut[numTsk]));
console.log('av.nut_start_ConvertGlobal2Grid['+numTsk+']=', preConverTsk);
};
//console.log('av.sgr.logEdNames=', av.sgr.logEdNames);
var ndx = av.sgr.logEdNames.indexOf(numTsk);
var tsk = av.sgr.logicNames[ndx];
var reactLen = av.sgr.react_argu.length;
var argue = '';
var allDishNdx = 0;
av.nut[numTsk].uiAll.geometry = 'grid';
if ('found' != nameMatch) {
// convert a REACTION only statement to a geometry=grid
if (0 != sub) { console.log('in av.env.convertGlobal2grid; REACTION only; sub=', sub); }
av.nut[numTsk].uiAll.geometry = 'grid';
for (var ii=0; ii < reactLen; ii++) {
argue = av.sgr.react_argu[ii];
console.log('av.nut['+numTsk+'].react['+argue+'][0]=', av.nut[numTsk].react[argue][0]);
av.nut[numTsk].react[argue][1] = av.nut[numTsk].react[argue][0];
av.nut[numTsk].react[argue][0] = null;
};
if (0 != av.nut[numTsk].react.value[1]) {
av.nut[numTsk].react.depletable[1] = 0;
av.nut[numTsk].resrc.initial[1] = av.nut.wrldSize;
av.nut[numTsk].cell.initial[1] = 1;
av.nut[numTsk].uiSub.initialHiNp[1] = 1;
av.nut[numTsk].uiSub.supplyTypeSlct[1] = 'unlimited';
} else {
av.nut[numTsk].resrc.initial[1] = 0;
av.nut[numTsk].cell.initial[1] = 0;
av.nut[numTsk].uiSub.initialHiNp[1] = 0;
av.nut[numTsk].uiSub.supplyTypeSlct[1] = 'none';
};
av.nut[numTsk].uiAll.supplyTypeSlct = 'uiSub';
if (av.dbg.flg.nut) {
var tempUIsub = {};
tempUIsub = JSON.parse(JSON.stringify(av.nut[numTsk].uiSub));
console.log('av.nut['+numTsk+']=', tempUIsub);
};
av.nut[numTsk].resrc.name[1] = tsk+'000q';
av.nut[numTsk].resrc.geometry[1] = 'grid';
av.nut[numTsk].react.resource[1] = tsk+'000q';
av.nut[numTsk].react.min[1] = av.sgr.nutdft.react.min;
av.nut[numTsk].react.max[1] = av.sgr.nutdft.react.max;
av.nut[numTsk].react.max_count[1] = av.sgr.nutdft.react.max_count;
av.nut[numTsk].react.type[1] = av.sgr.nutdft.react.type;
av.nut[numTsk].uiSub.area[1] = av.nut.wrldSize;
av.nut[numTsk].uiSub.regionCode[1] = '000';
console.log('av.nut['+numTsk+'].uiSub.regionCode[1]=', av.nut[numTsk].uiSub.regionCode[1]);
console.log('av.nut['+numTsk+'].uiSub.regionCode[0]=', av.nut[numTsk].uiSub.regionCode[0]);
if (av.dbg.flg.nut) {
var tmpUIsub = {};
tmpUIsub = JSON.parse(JSON.stringify(av.nut[numTsk].uiSub));
console.log('av.nut['+numTsk+']=', tmpUIsub);
};
av.nut[numTsk].uiSub.regionNdx[1] = allDishNdx;
av.nut[numTsk].uiSub.regionName[1] = av.sgr.regionQuarterNames[allDishNdx];
av.nut[numTsk].uiSub.regionSet[1] = 'q';
av.nut[numTsk].uiSub.initialHiNp[1] = av.nut.wrldSize;
if (av.dbg.flg.nut) {
var postConverTsk = {};
postConverTsk = JSON.parse(JSON.stringify(av.nut[numTsk]));
console.log('av.nut_endConvert_Global2Grid['+numTsk+']=', postConverTsk);
};
}
else {
// a RESOURCE statement with geometry=global exists
// not implemented as I don't expect this to exist.
// I need to figure out how to get the amount of global resources for this to be useful.
};
};
//----------------------------------------------------------------------------------- end av.env.convertGlobal2grid --
//------------------------------------------------------------------------------------------- av.env.environment2UI --
// puts data from the environment.cfg into the structure for the setup form for the population page
av.env.environment2UI = function (fileStr, from) {
'use strict';
if (av.dbg.flg.nut) { console.log('Nut: ', from, ' called av.env.environment2UI'); }
if ('test' != av.dnd.configFlag) {
// using 'normal' activeConfiguration
av.fzr.clearEnvironment('av.env.environment2UI');
//should the dom be loaded from the clean environment and then load the data from the file?
av.nut.wrldCols = av.fzr.actConfig.cols; //came from Number(dict.WORLD_X)
av.nut.wrldRows = av.fzr.actConfig.rows; //came from Number(dict.WORLD_Y)
av.nut.wrldSize = av.fzr.actConfig.cols * av.fzr.actConfig.rows; // av.fzr.actConfig.size;
av.env.nutrientParse(fileStr, 'av.env.environment2UI'); // uses av.nut
//console.log('av.nut["0not"].uiSub=', av.nut["0not"].uiSub);
av.env.findsupplyTypeSlct();
// now that region as and supply types have been defined, move relevant data from RESOURCE and CELL to uiSub
av.env.resrc2uiSub(); // must be called after supplyTypeSlct has been found
av.env.defaultNut2dom('av.env.environment2UI'); //put data from defaults in the dom.
av.env.ui2dom('av.env.environment2UI');
}
else {
// using "testConfig"
//need to just put text of environment.cfg into the text box on the test tab
console.log('not sure anything needs to be done for Test');
};
if (av.dbg.flg.nut) {
console.log('Nut: ==================================================================================== end of av.env.environment2UI==');
}
};
//----------------------------------------------------------------------------------- end av.env.environment2UI --
//Load defaults in the dom from the defaults in the av.nut structure.
//------------------------------------------------------------------------------------------- av.env.defaultNut2dom --
av.env.defaultNut2dom = function(from) {
var sugarLength = av.sgr.logicNames.length;
var numTsk, tsk, tskose;
// only one regioin for now, so this works. I may need add at subcode index later.
// the data for the regions may not go in the struture in the same order they need to be on the user interface.
for (var ii = 0; ii < sugarLength; ii++) {
numTsk = av.sgr.logEdNames[ii];
tsk = av.sgr.logicNames[ii];
tskose = av.sgr.oseNames[ii];
//document.getElementById(tsk+'_geometry').value = av.sgr.nutdft.uiAll.geometry; tiba should be deleted in 2021
document.getElementById(tsk+'_supplyTypeSlct').value = av.sgr.nutdft.uiAll.supplyTypeSlct;
document.getElementById(tsk+'_regionLayout').value = av.sgr.nutdft.uiAll.regionLayout;
document.getElementById(tsk+'_initialHiNp').value = av.sgr.nutdft.uiAll.initialHiNp;
for (subNum = 0; subNum <= av.nut.numRegionsinHTML; subNum++) {
//sconsole.log('dom =', tsk+subNum+'supplyTypeSlct');
//document.getElementById(tsk+subNum+'supplyTypeSlct') );
document.getElementById(tsk+subNum+'supplyTypeSlct').value = av.sgr.nutdft.uiSub.supplyTypeSlct;
document.getElementById(tsk+subNum+'initialHiNp').value = av.sgr.nutdft.uiSub.initialHiNpHi;
//console.log('document.getElementById('+tsk+subNum+'initialHiNp) =', document.getElementById(tsk+subNum+'initialHiNp').value );
document.getElementById(tsk+subNum+'inflowHiNp').value = av.sgr.nutdft.uiSub.inflowHi;
document.getElementById(tsk+subNum+'outflowHiNp').value = av.sgr.nutdft.uiSub.outflowHi;
document.getElementById(tsk+subNum+'hiSide').value = av.sgr.nutdft.uiSub.hiSide;
document.getElementById(tsk+subNum+'inflowLoNp').value = av.sgr.nutdft.uiSub.inflowLo;
document.getElementById(tsk+subNum+'outflowLoNp').value = av.sgr.nutdft.uiSub.outflowLo;
document.getElementById(tsk+subNum+'initialLoNp').value = av.sgr.nutdft.uiSub.initialHiNpLo;
document.getElementById(tsk+subNum+'regionName').value = av.sgr.nutdft.uiSub.regionName;
//console.log('document.getElementById('+tsk+subNum+'hiSide)=', document.getElementById(tsk+subNum+'hiSide') );
//
//document.getElementById(tsk+subNum+'diffuseCheck').checked = av.sgr.nutdft.uiSub.diffuseCheck;
//document.getElementById(tsk+subNum+'periodCheck').checked = av.sgr.nutdft.uiSub.periodCheck;
//document.getElementById(tsk+subNum+'gradientCheck').checked = av.sgr.nutdft.uiSub.gradientCheck;
//console.log('av.dom.'+tsk+subNum+'.diffuseChecked=', document.getElementById(tsk+subNum+'diffuseCheck').checked,
// '; period=', document.getElementById(tsk+subNum+'periodCheck').checked,
// '; gradient=',document.getElementById(tsk+subNum+'gradientCheck').checked);
//
// Not really in Dom, but needed to transition between environment.cfg to dom back to environment.cfg
//
//document.getElementById(tsk+subNum+'regionCode').value = av.sgr.nutdft.uiSub.regionCode;
//document.getElementById(tsk+subNum+'boxed').value = av.sgr.nutdft.uiSub.boxed;
//document.getElementById(tsk+subNum+'').value = av.sgr.nutdft.uiSub; //in case we think of another
} // end of subregion list
//if (av.dbg.flg.nut) { console.log('Nut: ----------------------------------------------------------- end of each task in default to dome =='); }
};
// if (av.dbg.flg.nut) { console.log('Nut: ================================================================== end of av.env.defaultNut2dom =='); }
};
//--------------------------------------------------------------------------------------- end av.env.defaultNut2dom --
//--------------------------------------------------------------------------------------------------- av.env.ui2dom --
av.env.ui2dom = function(from) {
//console.log(from, 'called av.env.ui2dom --------------------');
var sugarLength = av.sgr.logicNames.length; //
var numTsk, tsk, tskose;
var sub = 0; //Will need to loop throughh all sub later
// only one region for now, so this works. I may need add at subcode index later.
// the data for the regions may not go in the struture in the same order they need to be on the user interface.
var area = 1; // area of the world or subsection
var cols = Number(av.nut.wrldCols);
var rows = Number(av.nut.wrldRows);
var wrldSize = cols * rows;
for (var ii = 0; ii < sugarLength; ii++) {
numTsk = av.sgr.logEdNames[ii];
tsk = av.sgr.logicNames[ii];
tskose = av.sgr.oseNames[ii];
document.getElementById(tsk+'_regionLayout').value = av.nut[numTsk].uiAll.regionLayout;
document.getElementById(tsk+'_geometry').value = av.nut[numTsk].uiAll.geometry;
//console.log('numTsk=', numTsk, 'complexityLevel=', av.sgr.complexityLevel, '; uiAll=', av.nut[numTsk].uiAll);
if ('sgrBasic' == av.sgr.complexityLevel.toLowerCase() ) {
sub = 0;
document.getElementById(tsk+sub+'supplyTypeSlct').value = av.nut[numTsk].uiAll.supplyTypeSlct;
document.getElementById(tsk+sub+'regionLayout').value = '1Global';
//console.log('av.nut['+numTsk+']=', av.nut[numTsk].uiAll);
//console.log('document.getElementById('+tsk+'_supplyTypeSlct).value=', document.getElementById(tsk+'_supplyTypeSlct').value);
//console.log('document.getElementById('+tsk+'WsupplyTypeSlct).value=', document.getElementById(tsk+'WsupplyTypeSlct').value);
switch (av.nut[numTsk].uiAll.supplyTypeSlct) {
case 'limited':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.initialHiNp[sub])) ) {
document.getElementById(tsk+'1initialHiNp').value = av.nut[numTsk].uiSub.initialHiNp[sub];
} else {
document.getElementById(tsk+'initialHiNp').value = 0.5;
console.log('Error: av.nut['+numTsk+'].uiSub.initialHiNp['+sub+'] should be a number');
}
break;
case 'none':
//av.nut[numTsk].uiSub.initialHiNp[sub] = 0;
break;
case 'chemostat':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.inflowHiNp[sub])) ) {
document.getElementById(tsk+'1inflowHiNp').value = av.nut[numTsk].uiSub.inflowHiNp[sub];
} else if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.inflow[sub])) ) {
document.getElementById(tsk+'1inflowHiNp').value = Number(av.nut[numTsk].resrc.inflow[sub])/Number(av.nut.wrldSize);
} else { document.getElementById(tsk+'1inflowHiNp').value = 0.44444; }
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.outflowHiNp[sub])) ) {
document.getElementById(tsk+'1outflowHiNp').value = av.nut[numTsk].uiSub.outflowHiNp[sub];
} else if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.outflow[sub])) ) {
document.getElementById(tsk+'1outflowHiNp').value = av.nut[numTsk].resrc.outflow[sub];
} else { document.getElementById(tsk+'1outflowHiNp').value = 0.44444; }
break;
case 'unlimited':
av.nut[numTsk].uiSub.initialHiNp[sub] = 2;
break;
default :
console.log('av.nut['+numTsk+'].uiAll.supplyTypeSlct=', av.nut[numTsk].uiAll.supplyTypeSlct);
console.log('av.nut['+numTsk+'].uiAll.regionLayout=', av.nut[numTsk].uiAll.regionLayout, 'av.nut['+numTsk+'].uiAll.geometry=', av.nut[numTsk].uiAll.geometry);
break;
}; // end of switch statement
}
//else if ('1Global' == av.nut[numTsk].uiAll.regionLayout) { //needs to becocme this one.
else if ('global' == av.nut[numTsk].uiAll.geometry.toLowerCase() ) {
sub = 0;
document.getElementById(tsk+'_supplyTypeSlct').value = av.nut[numTsk].uiAll.supplyTypeSlct;
document.getElementById(tsk+'_regionLayout').value = '1Global';
//console.log('av.nut['+numTsk+']=', av.nut[numTsk].uiAll);
//console.log('document.getElementById('+tsk+'_supplyTypeSlct).value=', document.getElementById(tsk+'_supplyTypeSlct').value);
//console.log('document.getElementById('+tsk+'WsupplyTypeSlct).value=', document.getElementById(tsk+'WsupplyTypeSlct').value);
switch (av.nut[numTsk].uiAll.supplyTypeSlct) {
case 'limited':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.initialHiNp[sub])) ) {
document.getElementById(tsk+'_initialHiNp').value = av.nut[numTsk].uiSub.initialHiNp[sub];
} else {
document.getElementById(tsk+'_initialHiNp').value = 0.5;
console.log('Error: av.nut['+numTsk+'].uiSub.initialHiNp['+sub+'] should be a number');
}
break;
case 'none':
//av.nut[numTsk].uiSub.initialHiNp[sub] = 0;
break;
case 'chemostat':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.inflowHiNp[sub])) ) {
document.getElementById(tsk+'_inflowHiNp').value = av.nut[numTsk].uiSub.inflowHiNp[sub];
document.getElementById(tsk+'0inflowHiNp').value = av.nut[numTsk].uiSub.inflowHiNp[sub];
} else if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.inflow[sub])) ) {
document.getElementById(tsk+'_inflowHiNp').value = Number(av.nut[numTsk].resrc.inflow[sub])/Number(av.nut.wrldSize);
document.getElementById(tsk+'0inflowHiNp').value = Number(av.nut[numTsk].resrc.inflow[sub])/Number(av.nut.wrldSize);
} else {
document.getElementById(tsk+'_inflowHiNp').value = 0.44444;
document.getElementById(tsk+'0inflowHiNp').value = 0.44444;
}
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.outflowHiNp[sub])) ) {
document.getElementById(tsk+'_outflowHiNp').value = av.nut[numTsk].uiSub.outflowHiNp[sub];
document.getElementById(tsk+'0outflowHiNp').value = av.nut[numTsk].uiSub.outflowHiNp[sub];
} else if (av.utl.isNumber(parseFloat(av.nut[numTsk].resrc.outflow[sub])) ) {
document.getElementById(tsk+'_outflowHiNp').value = av.nut[numTsk].resrc.outflow[sub];
document.getElementById(tsk+'0outflowHiNp').value = av.nut[numTsk].resrc.outflow[sub];
} else {
document.getElementById(tsk+'_outflowHiNp').value = 0.44444;
document.getElementById(tsk+'0outflowHiNp').value = 0.44444;
}
break;
case 'unlimited':
av.nut[numTsk].uiSub.initialHiNp[sub] = 2;
break;
default :
console.log('av.nut['+numTsk+'].uiAll.supplyTypeSlct=', av.nut[numTsk].uiAll.supplyTypeSlct);
console.log('av.nut['+numTsk+'].uiAll.regionLayout=', av.nut[numTsk].uiAll.regionLayout, 'av.nut['+numTsk+'].uiAll.geometry=', av.nut[numTsk].uiAll.geometry);
break;
}; // end of switch statement
}
else if ('grid' == av.nut[numTsk].uiAll.geometry.toLowerCase() ) {
subsections = av.nut[numTsk].resrc.name.length;
console.log('av.nut['+numTsk+'].uiAll.geometry', av.nut[numTsk].uiAll.geometry
, '; av.nut['+numTsk+'].uiAll.regionLayout', av.nut[numTsk].uiAll.regionLayout
, '; av.nut['+numTsk+'].uiSub.supplyTypeSlct=', av.nut[numTsk].uiSub.supplyTypeSlct );
document.getElementById(tsk+'WsupplyTypeSlct').value = av.nut[numTsk].uiSub.supplyTypeSlct[1];
//Loop through each subsection.
for (sub = 1; sub < subsections; sub++) {
document.getElementById(tsk+sub+'supplyTypeSlct').value = av.nut[numTsk].uiSub.supplyTypeSlct[sub];
// Diffusion
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.diffuseCheck[sub]))) {
if (0 < parseFloat(av.nut[numTsk].uiSub.diffuseCheck[sub])) {
// document.getElementById(tsk+sub+'diffuseCheck').checked = true;
}
else {
// document.getElementById(tsk+sub+'diffuseCheck').checked = false;
};
};
console.log('document.getElementById('+tsk+sub+'supplyTypeSlct).value=', document.getElementById(tsk+sub+'supplyTypeSlct').value);
switch (av.nut[numTsk].uiSub.supplyTypeSlct[sub]) {
case 'limited':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.initialHiNp[sub])) ) {
document.getElementById(tsk+sub+'initialHiNp').value = av.nut[numTsk].uiSub.initialHiNp[sub];
} else {
document.getElementById(tsk+sub+'initialHiNp').value = 10;
console.log('Error: av.nut['+numTsk+'].uiSub.initialHiNp['+sub+'] should be a number');
}
break;
case 'none':
//av.nut[numTsk].uiSub.initialHiNp[sub] = 0;
break;
case 'chemostat':
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.inflowHiNp[sub])) ) {
document.getElementById(tsk+sub+'inflowHiNp').value = av.nut[numTsk].uiSub.inflowHiNp[sub];
} else { document.getElementById(tsk+sub+'inflowHiNp').value = .2222; }
if (av.utl.isNumber(parseFloat(av.nut[numTsk].uiSub.outflowHiNp[sub])) ) {
document.getElementById(tsk+sub+'outflowHiNp').value = av.nut[numTsk].uiSub.outflowHiNp[sub];
} else { document.getElementById(tsk+sub+'outflowHiNp').value = .1111; }
break;
case 'unlimited':
av.nut[numTsk].uiSub.initialHiNp[sub] = 2;
break;
//
}; // end of switch statement
}; // end of loop for subsections
}; // end of grid section
sub = 0;
// update layout for the "sugar" area of UI, based on nutrient structure (nut) from envrironment.cfg
av.sgr.changeDetailsLayout(tsk, 'av.env.ui2dom');
}; // end of task loop
if (av.dbg.flg.nutSum) {
console.log('Nut info now in dom: ========================================================================== end of av.env.ui2dom ==');
av.nut_ui2dom = {};
av.nut_ui2dom = JSON.parse(JSON.stringify(av.nut));
console.log('av.nut_ui2dom = ', av.nut_ui2dom);
};
};
//----------------------------------------------------------------------------------------------- end av.env.ui2dom --
//Now that structure exists, use that data to update values in the user interface.
// This function will be deleted Delete soon