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popControls.js
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popControls.js
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// *********************************************************************************************************************
// Population page script
// *********************************************************************************************************************
// ptd = PeTri Dish
var av = av || {}; //incase av already exists
// if (av.dbg.flg.root) { console.log('Root: before av.ptd.makePauseState'); }
av.ptd.makePauseState = function () {
document.getElementById('mnCnPause').disabled = true;
document.getElementById('mnCnRun').disabled = false;
document.getElementById('mnCnOne').disabled = false;
av.dom.runStopButton.textContent = 'Run';
av.dom.oneUpdateButton.disabled = false;
};
//change what buttons work in the user interface to be consistent with avida running on the population page.
//probably should not be called until after program is sure that it is valid to start running, but it works this way
//might change someday.
av.ptd.makeRunState = function (from) {
av.dom.runStopButton.textContent = 'Pause';
document.getElementById('mnCnPause').disabled = false;
document.getElementById('mnCnRun').disabled = true;
document.getElementById('mnCnOne').disabled = true;
av.dom.oneUpdateButton.disabled = true;
};
av.ptd.popWorldStateUi = function (from) {
'use strict';
console.log(from, 'called av.ptd.popWorldStateUi');
av.grd.runState = 'world';
//Disable some of the options on the Setup page
av.dom.sizeCols.disabled = true;
av.dom.sizeRows.disabled = true;
//av.dom.experimentRadio.disabled = true;
//av.dom.demoRadio.disabled = true;
//there will be a population so it can now be frozen.
document.getElementById('mnFzPopulation').disabled = false;
};
av.ptd.popTdishStateUi = function (from) {
'use strict';
console.log(from, 'called av.ptd.popTdishStateUi');
av.grd.runState = 'tDish';
//Disable normal Setup page and setup testDish setup Page
av.dom.sizeCols.disabled = true;
av.dom.sizeRows.disabled = true;
//av.dom.experimentRadio.disabled = true;
//av.dom.demoRadio.disabled = true;
//there will be a population so it can now be frozen.
document.getElementById('mnFzPopulation').disabled = false;
};
//---------------------------------------------------------------------------------------- av.ptd.popRunningStateUi --
av.ptd.popRunningStateUi = function () {
'use strict';
av.grd.runState = 'started'; //the run has now started
//Disable some of the options on the Setup page
$('#mutePopSlide').slider({disabled: true}); //http://stackoverflow.com/questions/970358/jquery-readonly-slider-how-to-do
av.dom.sizeCols.disabled = true;
av.dom.sizeRows.disabled = true;
av.dom.mutePopInput.disabled= true;
av.dom.childParentRadio.disabled = true;
av.dom.childRandomRadio.disabled = true;
var tsk='neq';
var len = av.sgr.logicNames.length;
for (var ndx=0; ndx<len; ndx++) {
tsk = av.sgr.logicNames[ndx];
document.getElementById(tsk+'_geometry').disabled = true;
document.getElementById(tsk+'_regionLayout').disabled = true;
document.getElementById(tsk+'_supplyTypeSlct').disabled = true;
document.getElementById(tsk+'WsupplyTypeSlct').disabled = true;
document.getElementById(tsk+'_periodcheckboxHolder').disabled = true;
document.getElementById(tsk+'_periodTimeHolder').disabled = true;
document.getElementById(tsk+'_initialHiNp').disabled = true;
for (var sub=0; sub<av.nut.numRegionsinHTML; sub++) {
document.getElementById(tsk+sub+'supplyTypeSlct').disabled = true;
//console.log('html:', tsk+sub+'supplyModifierSelect');
document.getElementById(tsk+sub+'supplyModifierSelect').disabled = true;
document.getElementById(tsk+sub+'periodNp').disabled = true;
document.getElementById(tsk+sub+'hiSide').disabled = true;
document.getElementById(tsk+sub+'initialHiNp').disabled = true;
document.getElementById(tsk+sub+'initialLoNp').disabled = true;
document.getElementById(tsk+sub+'inflowHiNp').disabled = true;
document.getElementById(tsk+sub+'inflowLoNp').disabled = true;
document.getElementById(tsk+sub+'outflowHiNp').disabled = true;
document.getElementById(tsk+sub+'outflowLoNp').disabled = true;
};
};
document.getElementById('allsugarsupplyTypeSlct').disabled = true;
document.getElementById('allSugarRegionLayout').disabled = true;
document.getElementById('allSugarModifier').disabled = true;
document.getElementById('allSugarDetails').disabled = true;
av.dom.experimentRadio.disabled = true;
av.dom.demoRadio.disabled = true;
//there will be a population so it can now be frozen.
document.getElementById('mnFzPopulation').disabled = false;
};
//------------------------------------------------------------------------------------ end av.ptd.popRunningStateUi --
//------------------------------------------------------------------------------------------ av.ptd.popNewExStateFn --
av.ptd.popNewExStateFn = function (from) {
'use strict';
console.log(from, 'called av.ptd.popNewExStateFn: actConfig was', av.fzr.actConfig.name);
// a way to keep the same active configuration
// if (av.fzr.actConfig.name != '@default') {
// console.log('av.fzr.actConfig.name =', av.fzr.actConfig.name);
// av.dnd.loadConfigByNameFn(av.fzr.actConfig.name, 'av.ptd.popNewExStateFn');
// return;
// }
av.dnd.loadDefaultConfigFn('av.ptd.popNewExStateFn');
//set configuation to default
var fname = '@default';
var domId = Object.keys(av.dnd.containerMap['#activeConfig'])[0];
av.fzr.actConfig.actDomid = domId;
av.fzr.actConfig.name = fname;
av.fzr.actConfig.type = 'c';
av.fzr.actConfig.actDomid = 'dom_c0';
av.fzr.actConfig.dir = 'c0';
// clear parents
av.dom.sizeCols.disabled = false;
av.dom.sizeRows.disabled = false;
av.dom.mutePopInput.disabled = false;
$('#mutePopSlide').slider({disabled: false}); //http://stackoverflow.com/questions/970358/jquery-readonly-slider-how-to-do
av.dom.childParentRadio.disabled = false;
av.dom.childRandomRadio.disabled = false;
console.log('Avida-ED4: need to reset defaults on new Environmental seettings.');
av.dom.experimentRadio.disabled = false;
av.dom.demoRadio.disabled = false;
var tsk='neq';
var len = av.sgr.logicNames.length;
for (var ndx=0; ndx<len; ndx++) {
tsk = av.sgr.logicNames[ndx];
document.getElementById(tsk+'_geometry').disabled = false;
document.getElementById(tsk+'_regionLayout').disabled = false;
document.getElementById(tsk+'_supplyTypeSlct').disabled = false;
document.getElementById(tsk+'WsupplyTypeSlct').disabled = false;
document.getElementById(tsk+'_periodcheckboxHolder').disabled = false;
document.getElementById(tsk+'_periodTimeHolder').disabled = false;
document.getElementById(tsk+'_initialHiNp').disabled = false;
//clear the resource series graphs
av.pch.resrcGlobal[tsk] = [];
for (var sub=1; sub<av.nut.numRegionsinHTML; sub++) {
document.getElementById(tsk+sub+'supplyTypeSlct').disabled = false;
document.getElementById(tsk+sub+'supplyModifierSelect').disabled = false;
document.getElementById(tsk+sub+'periodNp').disabled = false;
document.getElementById(tsk+sub+'hiSide').disabled = false;
document.getElementById(tsk+sub+'initialHiNp').disabled = false;
document.getElementById(tsk+sub+'initialLoNp').disabled = false;
document.getElementById(tsk+sub+'inflowHiNp').disabled = false;
document.getElementById(tsk+sub+'inflowLoNp').disabled = false;
document.getElementById(tsk+sub+'outflowHiNp').disabled = false;
document.getElementById(tsk+sub+'outflowLoNp').disabled = false;
};
};
var tsk='neq';
var len = av.sgr.logicNames.length;
for (var ndx=0; ndx<len; ndx++) {
tsk = av.sgr.logicNames[ndx];
document.getElementById(tsk+'_geometry').disabled = false;
document.getElementById(tsk+'_regionLayout').disabled = false;
document.getElementById(tsk+'_supplyTypeSlct').disabled = false;
document.getElementById(tsk+'WsupplyTypeSlct').disabled = false;
document.getElementById(tsk+'_periodcheckboxHolder').disabled = false;
document.getElementById(tsk+'_periodTimeHolder').disabled = false;
document.getElementById(tsk+'_initialHiNp').disabled = false;
//clear the resource series graphs
av.pch.resrcGlobal[tsk] = [];
for (var sub=0; sub<av.nut.numRegionsinHTML; sub++) {
document.getElementById(tsk+sub+'supplyTypeSlct').disabled = false;
document.getElementById(tsk+sub+'supplyModifierSelect').disabled = false;
document.getElementById(tsk+sub+'periodNp').disabled = false;
document.getElementById(tsk+sub+'hiSide').disabled = false;
document.getElementById(tsk+sub+'initialHiNp').disabled = false;
document.getElementById(tsk+sub+'initialLoNp').disabled = false;
document.getElementById(tsk+sub+'inflowHiNp').disabled = false;
document.getElementById(tsk+sub+'inflowLoNp').disabled = false;
document.getElementById(tsk+sub+'outflowHiNp').disabled = false;
document.getElementById(tsk+sub+'outflowLoNp').disabled = false;
};
};
//document.getElementById('allSugarGeometry').disabled = false;
document.getElementById('allsugarsupplyTypeSlct').disabled = false;
document.getElementById('allSugarRegionLayout').disabled = false;
document.getElementById('allSugarModifier').disabled = false;
document.getElementById('allSugarDetails').disabled = false;
console.log('environment settings should now be enabled ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~');
//reset Ancestor Color stack
//av.parents.Colors = av.color.parentColorList.slice(); //delete this later
av.parents.Colors.reverse();
//set run/stop and drop down menu to the 'stopped' state
document.getElementById('mnCnPause').disabled = true;
document.getElementById('mnCnRun').disabled = false;
av.dom.runStopButton.innerHTML = 'Run';
//console.log('pauseState; button=run in av.ptd.popNewExStateFn');
//clear the time series graphs
av.pch.aveFit = [];
av.pch.logFit = [];
av.pch.aveCst = [];
av.pch.logCst = [];
av.pch.aveEar = [];
av.pch.logEar = [];
av.pch.aveNum = [];
av.pch.logNum = [];
TimeLabel.textContent = 0;
var dir = av.fzr.actConfig.dir;
var fileStr = av.fzr.file[dir + '/avida.cfg'];
av.frd.avidaCFG2form(fileStr, 'av.ptd.popNewExStateFn');
av.dnd.empty(av.dnd.ancestorBox);
av.dnd.empty(av.dnd.ancestorBoTest);
//Update data for Selected Organism Type
av.dom.sotColorBox.style.backgroundColor = '#D7D7D7';
av.dom.sotColorBox.style.border = '2px solid ' + '#D7D7D7';
nameLabel.textContent = '';
fitLabel.innerHTML = '';
energyAcqRateLabel.textContent = '';
offspringCostLabel.textContent = '';
ageLabel.textContent = '';
ancestorLabel.textContent = '';
viableLabel.textContent = '';
notLabel.textContent = 'NOT';
nanLabel.textContent = 'NAN';
andLabel.textContent = 'AND';
ornLabel.textContent = 'ORN';
oroLabel.textContent = 'ORO';
antLabel.textContent = 'ANT';
norLabel.textContent = 'NOR';
xorLabel.textContent = 'XOR';
equLabel.textContent = 'EQU';
notTime.textContent = '0';
nanTime.textContent = '0';
andTime.textContent = '0';
ornTime.textContent = '0';
oroTime.textContent = '0';
antTime.textContent = '0';
norTime.textContent = '0';
xorTime.textContent = '0';
equTime.textContent = '0';
//Population Statistics
popSizeLabel.textContent = '';
aFitLabel.textContent = '';
aEnergyAcqRateLabel.textContent = '';
aOffspringCostLabel.textContent = '';
aAgeLabel.textContent = '';
parentNumLabel.textContent = '';
viableNumLabel.textContent = '';
notPop.textContent = '';
nanPop.textContent = '';
andPop.textContent = '';
ornPop.textContent = '';
oroPop.textContent = '';
antPop.textContent = '';
norPop.textContent = '';
xorPop.textContent = '';
equPop.textContent = '';
numLog.textContent = '';
logTit0.textContent = '';
logTit1.textContent = '';
logTit2.textContent = '';
logTit3.textContent = '';
logTit4.textContent = '';
logTit5.textContent = '';
logTit6.textContent = '';
logTit7.textContent = '';
av.grd.flagSelected = false;
document.getElementById('mnCnOrganismTrace').disabled = true;
document.getElementById('mnFzOrganism').disabled = true;
};
//after Run button pushed for population
av.ptd.runPopFn = function (from) {
'use strict';
if (av.debug.popCon) { console.log('popCon:', from, 'called av.ptd.runPopFn: runPopFn runState =', av.grd.runState); }
console.log(from, 'called av.ptd.runPopFn: runPopFn runState =', av.grd.runState);
//check for ancestor organism in configuration data
var namelist;
// used only for testing new dish configurations don't work in the current computer interface
if ('test' == av.msg.setupType)
namelist = $.map(document.querySelector('#ancestorBoTest').children, (x) => {return x.innerHTML.trim()});
// normal end user version
else
//get a list of names of organisms that are in the starting population.
//works for both configured dishes and populated dishes
namelist = $.map(document.querySelector('#ancestorBox').children, (x) => {return x.innerHTML.trim()});
if (namelist.length < 1) {
//console.log('about to call av.ptd.makePauseState()');
// tiba: fix so 'av.ptd.makeRunState' is not called till after tests are done and remove the extra calls to makePauseState
av.ptd.makePauseState();
//NeedAncestorDialog.show();
av.dom.needAncestorModalID.style.display = 'block';
}
else if (!av.ptd.validGridSize) {
console.log('not option: !av.ptd.validGridSize=', !av.ptd.validGridSize);
// tiba: fix so 'av.ptd.makeRunState' is not called till after tests are done and remove the extra calls to makePauseState
av.ptd.makePauseState();
av.dom.userMsgLabel.innerHTML = 'A valid grid size is required before Avida will run';
if ('populationBlock' !== av.ui.page) av.ui.mainBoxSwap('populationBlock');
}
else if (!av.ptd.validMuteInuput) {
console.log('Not option: av.ptd.validMuteInuput=',av.ptd.validMuteInuput);
// tiba: fix so 'av.ptd.makeRunState' is not called till after tests are done and remove the extra calls to makePauseState
av.ptd.makePauseState();
av.dom.userMsgLabel.innerHTML = 'A valid mutation rate is required before Avida will run';
if ('populationBlock' !== av.ui.page) av.ui.mainBoxSwap('populationBlock');
}
else { // setup for a new run by sending config data to avida
if (av.debug.popCon) console.log('else: av.ptd.validMuteInuput=',av.ptd.validMuteInuput);
av.dom.userMsgLabel.innerHTML = '';
// tiba: eventually put the 'av.ptd.makeRunState' here.
if ('started' !== av.grd.runState) {
if ('test' == av.msg.setupType) {
console.log('test files just allow edits directly to the environment file so rest of form is ignored');
//get original files.
av.fwt.testForm2folder();
}
//
else {
//collect setup data to send to avida in a normal run.
//Order matters. Files must be created first. Then files must be sent before some other stuff.
av.fwt.form2cfgFolder(); //creates avida.cfg and environment.cfg and ancestor.txt and ancestors_manual.txt from form
};
if ('prepping' === av.grd.runState) {
av.msg.importConfigExpr('av.ptd.runPopFn ln301'); // send importExpr message to avida
//console.log('after calling av.msg.importConfigExpr');
//used for configured dish
av.msg.injectAncestors('config');
}
else {
av.msg.importWorldExpr();
//console.log('parents.injected = av.parents.injected);
//av.debug.log += '\nstart importWorld running-----------------------------------------\n'
av.msg.injectAncestors('world');
}
//change ui parameters for the correct state when the avida population has started running
av.ptd.popRunningStateUi(); //av.grd.runState now == 'started'
av.msg.requestGridData();
av.msg.requestPopStats();
if (0 < av.grd.selectedNdx) av.msg.doWebOrgDataByCell();
//initialize arrays to store data by_clade (or can be called by_ancestor)
av.pch.numDads = (av.pch.dadMax < av.parents.name.length) ? av.pch.dadMax : av.parents.name.length;
for (var ii = 0; ii < av.pch.numDads; ii++) {
av.pch.dadFit[av.parents.name[ii]] = [];
av.pch.dadCst[av.parents.name[ii]] = [];
av.pch.dadEar[av.parents.name[ii]] = [];
av.pch.dadNum[av.parents.name[ii]] = [];
av.pch.dadVia[av.parents.name[ii]] = [];
}
//console.log('numver of ancestors =',av.pch.numDads, '; av.pch.dadFit=',av.pch.dadFit);
}; // end if section to deal with starting a new run
if (av.dom.autoPauseCheck.checked) {
av.ui.autoStopFlag = true; // switching to using check box directly
av.ui.autoStopValue = av.dom.autoPauseNum.value; // swithcing to using dom value
//console.log('stop at = av.dom.autoPauseNum.value;
};
//console.log('before call av.ptd.makeRunState');
av.ptd.makeRunState('av.ptd.runPopFn 338');
//console.log('after call av.ptd.makeRunState');
av.msg.stepUpdate(); //av.msg.doRunPause(av.fio);
//console.log('after av.msg.stepUpdate');
}
if (av.debug.popCon) console.log('end of av.ptd.runPopFn 331');
//update screen based on data from C++
};
//-------------------------------------------------------------------------------------- end av.ptd.popNewExStateFn --
//------------------------------------------------------------------------------------------------ av.ptd.runStopFn --
av.ptd.runStopFn = function () {
if ('Run' == av.dom.runStopButton.innerHTML) {
av.ptd.makeRunState('av.ptd.runStopFn');
av.ptd.runPopFn('av.ptd.runStopFn');
} else {
//console.log('about to call av.ptd.makePauseState()');
//av.debug.log += 'about to call av.ptd.makePauseState() in AvidaEd.js line 772 \n';
av.ptd.makePauseState();
//av.msg.doRunPause(av.fio);
//console.log('pop size = av.pch.aveNum);
}
};
//-------------------------------------------------------------------------------------------- end av.ptd.runStopFn --
//--------------------------------------------------------------------------------------------------------------------
// Freezer Button functions
//--------------------------------------------------------------------------------------------------------------------
//Freeze the selected organism
av.ptd.FrOrganismFn = function (trigger) {
'use strict';
var fzName = 'new';
var parentName = '';
var gene;
var container = av.dnd.fzOrgan.id !== undefined ? "#" + av.dnd.fzOrgan.id : "." + av.dnd.fzOrgan.className;
if ('selected' == trigger) {
fzName = prompt('Please name the selected organism', av.grd.kidName);
gene = av.grd.kidGenome;
}
else if ('offspring' == trigger) {
//get name from parent
parentName = av.dnd.activeOrgan.textContent.trim();
fzName = prompt('Please name the offspring', parentName + '_offspring');
gene = '0,heads_default,' + av.ind.dna[1];
}
else {
fzName = prompt('Please name the organism', 'newOrganism');
//console.log('source unknwon', trigger);
}
fzName = av.dnd.getUniqueFzrName(av.dnd.fzOrgan, fzName);
if (null != fzName) {
//insert new item into the freezer.
var type = 'g'
var domid = `dom_${type}${av.fzr.gNum}`
$(container).append(`<div class="item ${type}" id="${domid}"> <img src='images/Avida-ED-ancestor-icon.png' class='AvidianIcon'> ${fzName} </div>`)
av.dnd.containerMap[container][domid] = {"name": fzName, "type": type};
av.fzr.dir[domid] = 'g' + av.fzr.gNum;
av.fzr.domid['g' + av.fzr.gNum] = domid;
av.fzr.file['g' + av.fzr.gNum + '/genome.seq'] = gene;
av.fzr.file['g' + av.fzr.gNum + '/entryname.txt'] = fzName;
av.fzr.gNum++;
console.log(av.fzr);
av.dnd.contextMenu(av.dnd.fzWorld, domid, 'av.ptd.FrOrganismFn');
av.fzr.saveUpdateState('no');
}
};
//get a name for the new config file for the freezer
av.ptd.FrConfigFn = function (from) {
'use strict';
console.log(from, ' called av.ptd.FrConfigFn');
var sName = av.dnd.namefzrItem(av.dnd.fzConfig, 'newConfig');
var fzName = prompt('Please name the new configuration', sName);
var container = av.dnd.fzConfig.id !== undefined ? "#" + av.dnd.fzConfig.id : "." + av.dnd.fzConfig.className;
if (fzName) {
fzName = av.dnd.getUniqueFzrName(av.dnd.fzConfig, fzName);
if (null != fzName) {
var type = 'c'
var domid = `dom_${type}${av.fzr.cNum}`
$(container).append(`<div class="item ${type}" id="${domid}"> <img src='images/Avida-ED-dish-icon.png' class='DishIcon'> ${fzName} </div>`)
av.dnd.containerMap[container][domid] = {"name": fzName, "type": type};
av.fzr.dir[domid] = 'c'+ av.fzr.cNum;
av.fzr.domid['c'+ av.fzr.cNum] = domid;
av.fzr.file[av.fzr.dir[domid]+'/entryname.txt'] = fzName;
av.fwt.makeFzrConfig(av.fzr.cNum, 'av.ptd.FrConfigFn');
av.fzr.cNum++;
//Create context menu for right-click on this item
av.dnd.contextMenu(av.dnd.fzConfig, domid, 'av.ptd.FrConfigFn');
av.fzr.saveUpdateState('no');
}
}
};
//Save a populated dish
av.ptd.FrPopulationFn = function () {
'use strict';
av.msg.exportExpr('w' + av.fzr.wNum);
av.msg.sendData();
var popName = av.fzr.actConfig.name + '@' + av.grd.popStatsMsg.update.formatNum(0); // need update here star
var fzName = prompt('Please name the new population', popName);
var container = av.dnd.fzWorld.id !== undefined ? "#" + av.dnd.fzWorld.id : "." + av.dnd.fzWorld.className;
if (fzName) {
fzName = av.dnd.getUniqueFzrName(av.dnd.fzWorld, fzName);
if (null != fzName) {
var type = 'w'
var domid = `dom_${type}${av.fzr.wNum}`
$(container).append(`<div class="item ${type}" id="${domid}"> <img src='images/Avida-ED-dish-icon.png' class='DishIcon'> ${fzName} </div>`)
av.dnd.containerMap[container][domid] = {"name": fzName, "type": type};
av.fzr.dir[domid] = 'w'+ av.fzr.wNum;
av.fzr.domid['w'+ av.fzr.wNum] = domid;
av.fzr.file[av.fzr.dir[domid]+'/entryname.txt'] = fzName;
av.fwt.makeFzrWorld(av.fzr.wNum, 'av.ptd.FrPopulationFn');
av.fzr.wNum++;
//Create context menu for right-click on this item
av.dnd.contextMenu(av.dnd.fzWorld, domid, 'av.ptd.FrPopulationFn');
av.fzr.saveUpdateState('no');
}
}
};
av.pch.processLogic = function() {
"use strict";
//console.log('In av.pch.processLogic: av.pch.fnBinary = ', av.pch.fnBinary);
if ( (null !== av.pch.fnBinary) && (undefined !== av.pch.fnBinary) ) {
for (var ii = 0; ii<9; ii++) {
//console.log('substring = ', av.pch.fnBinary.substring(ii,ii+1));
//console.log('ii = ', ii, '; buton=', av.ptd.logicButtons[ii]);
if ('1' == av.pch.fnBinary.substring(ii, ii + 1)) {
av.pch.bitTurnOn(av.ptd.logicButtons[ii]);
}
}
}
};
av.pch.bitTurnOn = function(button) {
"use strict";
document.getElementById(button).value = 'on';
document.getElementById(button).className = 'bitButtonOn';
av.post.addUser('Button: ' + button + ' = on');
av.grd.fnChosen[button] = true;
av.grd.selFnText = '';
av.grd.selFnBinary = '';
for (var ii=0; ii<9; ii++) {
if (av.grd.fnChosen[av.ptd.logicButtons[ii]]) {
av.grd.selFnText += av.sgr.logicNames[ii] + '.';
av.grd.selFnBinary += '1';
}
else av.grd.selFnBinary +='0';
}
if (3 > av.grd.selFnText.length) {av.grd.selFnText = 'none';}
//console.log('av.grd.fnChosen = ', av.grd.fnChosen);
//console.log('av.grd.selFnText =', av.grd.selFnText);
//console.log('av.grd.selFnBinary =',av.grd.selFnBinary);
};
av.ptd.bitToggle = function (button) {
'use strict';
if ('on' == document.getElementById(button).value) {
document.getElementById(button).value = 'off';
document.getElementById(button).className = 'bitButtonOff';
av.post.addUser('Button: ' + button + ' = off');
av.grd.fnChosen[button] = false;
}
else {
document.getElementById(button).value = 'on';
document.getElementById(button).className = 'bitButtonOn';
av.post.addUser('Button: ' + button + ' = on');
av.grd.fnChosen[button] = true;
}
av.grd.selFnText = '';
av.grd.selFnBinary = '';
for (var ii=0; ii<9; ii++) {
if (av.grd.fnChosen[av.ptd.logicButtons[ii]]) {
av.grd.selFnText += av.sgr.logicNames[ii] + '.';
av.grd.selFnBinary += '1';
}
else av.grd.selFnBinary +='0';
}
if (3 > av.grd.selFnText.length) {av.grd.selFnText = 'none';}
//console.log('av.grd.fnChosen = ', av.grd.fnChosen);
//console.log('av.grd.selFnText =', av.grd.selFnText);
//console.log('av.grd.selFnBinary =',av.grd.selFnBinary);
//console.log('av.grd.selFnText=', av.grd.selFnText);
var lngth = av.pch.aveFit.length;
for (var ii=0; ii < lngth; ii++){
av.pch.logFit[ii] = null;
av.pch.logCst[ii] = null;
av.pch.logEar[ii] = null;
av.pch.logNum[ii] = null;
}
av.grd.drawGridSetupFn('av.ptd.bitToggle');
av.grd.popChartFn(false, 'av.ptd.bitToggle');
//console.log('bitToggle: av.grd.popStatsMsg.update', av.grd.popStatsMsg.update);
av.ptd.updateLogicFn(av.grd.popStatsMsg.update);
};
//Need to reset all settings to @default
av.ptd.resetDishFn = function (need2sendRest2avida) {
'use strict';
//Take this out if we only reset when avida resets After sending a request for reset.
// send reset to Avida adaptor
// this is still here because the code to remove the attempt to restart avida without reloading the web app has not been removed.
// Restarting avida without restarting the web app has never worked.
//if (need2sendRest2avida) {av.msg.reset();}
var Tsk;
console.log('in resetDishFn');
av.ptd.makePauseState();
av.grd.clearGrd();
if (av.debug.grid) console.log('before calling av.grd.popChartInit');
av.grd.popChartInit('restDishFn');
av.grd.runState = 'prepping';
document.getElementById('mnCnOrganismTrace').disabled = true;
document.getElementById('mnFzOrganism').disabled = true;
//Enable the options on the Setup page
av.ptd.popNewExStateFn('av.ptd.resetDishFn');
// //Clear grid settings
// av.parents.clearParentsFn();
// // reset values in population settings based on a 'file' @default
// av.fzr.actConfig.file = {};
// // write if @default not found - need to figure out a test for this
// // av.ptd.writeHardDefault(av);
// av.fzr.actConfig.dir = 'c0';
// av.fzr.actConfig.file['events.cfg'] = ' ';
// if (av.fzr.actConfig.file['clade.ssg']) {delete av.fzr.actConfig.file['clade.ssg'];}
// if (av.fzr.actConfig.file['detail.spop']) {delete av.fzr.actConfig.file['detail.spop'];}
// if (av.fzr.actConfig.file['update']) {delete av.fzr.actConfig.file['update'];}
// if (av.fzr.file[av.fzr.actConfig.dir + '/ancestors.txt']) {
// str = av.fzr.file[av.fzr.actConfig.dir + '/ancestors.txt'];
// av.fio.autoAncestorLoad(str);
// }
// if (av.fzr.file[av.fzr.actConfig.dir + '/ancestors_manual.txt']) {
// str = av.fzr.file[av.fzr.actConfig.dir + '/ancestors_manual.txt'];
// av.fio.handAncestorLoad(str);
// }
// av.frd.updateSetup('av.ptd.resetDishFn');
if (av.fzr.file[av.fzr.actConfig.dir + '/instset.cfg']) {av.fzr.actConfig.file['instset.cfg'] = av.fzr.file[av.fzr.actConfig.dir + '/instset.cfg'];}
//Clear options that are not in the config files
av.dom.autoPauseCheck.checked = false;
av.dom.autoPauseNum.value = av.ptd.autoPauseUpdate;
av.ptd.clearLogicButtons();
//console.log('fzr.activeCon', av.fzr.actConfig);
// re-write grid if that page is visible
av.grd.drawGridSetupFn('av.ptd.resetDishFn');
// reset resource values.
for (var ii=0; ii < av.sgr.numTasks; ii++) {
Tsk = av.sgr.logicTitleNames[ii];
document.getElementById('mx'+Tsk).innerHTML = '';
document.getElementById('cell'+Tsk).innerHTML = '';
document.getElementById('tot'+Tsk).innerHTML = '';
};
};
//clear logic Buttons
av.ptd.clearLogicButtons = function() {
var len = av.ptd.logicButtons.length;
for (var ii = 0; ii < len; ii++) {
document.getElementById(av.ptd.logicButtons[ii]).value = 'off';
document.getElementById(av.ptd.logicButtons[ii]).className = 'bitButtonOff';
av.grd.fnChosen[av.ptd.logicButtons[ii]] = false;
}
};
//----------------------------------------------------------------------------------------------------------------------
// should really be in a ui code section
// http://stackoverflow.com/questions/7125453/modifying-css-class-property-values-on-the-fly-with-javascript-jquery
av.ptd.setStyle = function (cssText) {
var sheet = document.createElement('style'), isIE = false;
sheet.type = 'text/css';
/* Optional */ window.customSheet = sheet;
(document.head || document.getElementsByTagName('head')[0]).appendChild(sheet);
try{sheet.cloneNode(false).appendChild(document.createTextNode('')); }
catch (err){isIE = true; }
var wrapper = isIE ? document.createElement('div') : sheet;
return (setStyle = function(cssText, node) {
if (!node || node.parentNode !== wrapper)
node = wrapper.appendChild(document.createTextNode(cssText));
else node.nodeValue = cssText;
if (isIE) sheet.styleSheet.cssText = wrapper.innerHTML;
return node;
})(cssText);
};
//----------------------------------------------------------------------------------------------------------------------