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index.html
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<!doctype html>
<html>
<head>
<meta charset="utf-8">
<meta http-equiv="x-ua-compatible" content="ie=edge">
<title>CASTLE</title>
<meta name="description" content="">
<meta name="viewport" content="width=device-width, initial-scale=1">
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js"></script>
<script src="http://code.jquery.com/jquery-1.11.0.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery-csv/0.71/jquery.csv-0.71.min.js"></script>
<!-- <script src="js/jquery-csv-master/src/jquery.csv.js"></script> -->
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/PapaParse/4.1.2/papaparse.js"></script>
<!-- <script src="js/jquery-csv-master/src/jquery.csv.min.js"></script> -->
<!-- <link rel="manifest" href="site.webmanifest"> -->
<link rel="shortcut icon" type="image/x-icon" href="img/favicon.png">
<!-- Place favicon.ico in the root directory -->
<!-- CSS here -->
<link rel="stylesheet" href="css/bootstrap.min.css">
<link rel="stylesheet" href="css/owl.carousel.min.css">
<link rel="stylesheet" href="css/magnific-popup.css">
<link rel="stylesheet" href="css/font-awesome.min.css">
<link rel="stylesheet" href="css/themify-icons.css">
<link rel="stylesheet" href="css/nice-select.css">
<link rel="stylesheet" href="css/flaticon.css">
<link rel="stylesheet" href="css/animate.css">
<link rel="stylesheet" href="css/slicknav.css">
<link rel="stylesheet" href="css/style.css">
<!-- <link rel="stylesheet" href="css/responsive.css"> -->
</head>
<body>
<!--[if lte IE 9]>
<p class="browserupgrade">You are using an <strong>outdated</strong> browser. Please <a href="https://browsehappy.com/">upgrade your browser</a> to improve your experience and security.</p>
<![endif]-->
<!-- header-start -->
<header>
<div class="header-area ">
<div id="sticky-header" class="main-header-area white-bg">
<div class="container-fluid p-0">
<div class="row align-items-center justify-content-between no-gutters">
<div class="col-xl-2 col-lg-2">
<div class="logo-img">
<a href="index.html">
<img src="img/logo.png" alt="">
</a>
</div>
</div>
<div class="col-xl-4 col-lg-4">
<div class="main-menu d-none d-lg-block">
<nav>
<ul id="navigation">
<li><a class="active" href="index.html">home</a></li>
<li><a href="about.html">About</a></li>
<li><a href="contact.html">Contact</a></li>
</ul>
</nav>
</div>
</div>
<div class="col-12">
<div class="mobile_menu d-block d-lg-none"></div>
</div>
</div>
</div>
</div>
</div>
</header>
<!-- header-end -->
<!-- slider_area_start -->
<div class="slider_area">
<div class="slider_active owl-carousel">
<div class="single_slider overlay2 d-flex align-items-center justify-content-center slider_bg_1">
<div class="container">
<div class="row">
<div class="col-xl-12">
<div class="slider_text text-center">
<h3><mark>CASTLE</mark></h3>
<br>
<p><mark>Computational Analysis of SynThetic LEthals</mark></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<!-- slider_area_end -->
<!-- about_area_start -->
<div class="about_area">
<div class="container">
<div class="row align-items-center">
<div class="col-xl-12 md-4">
<div class="text-center mb-5">
<p><font color="#000" size="5">CASTLE is a collection of synthetic lethal data for various pathogenic organisms, generated computationally. Here, you can find synthetic lethal genes and reactions for more than 70 organisms.</font></p>
</div>
<center><input id="myTextbox1" type="text" placeholder="Search by organism">
<p><font color="#333333" size="3"><br>Click on organism name or gene/reaction counts to go to individual organism page. Know more on how to use CASTLE in <a href="about.html"><font color="#0000ff">About</font></a> page.</font></p>
<br></center>
</div>
<div id="out1">
<script type='text/javascript'>
//for displaying table at the beginning
$.ajax({
type: "GET",
url: "master.csv",
dataType: "text",
success: function(response) {
//alert("success");
console.log(response);
//console.log(data);
//var dataArray = data.toArrays(response);
// debugging toArrays function by RAjiv
//a is a variable with undefined value
dataArray = csv2array(response, ',');
//console.log(dataArray); //function call
generateHtmlTable(dataArray);
}
});
</script>
</div>
</div>
</div>
</div>
<!-- footer_start -->
<footer class="footer footer_bg">
<div class="footer_copy_right">
<p><!-- Link back to Colorlib can't be removed. Template is licensed under CC BY 3.0. -->
Copyright ©<script>document.write(new Date().getFullYear());</script> All rights reserved by CASTLE | This template is made with <i class="fa fa-heart-o" aria-hidden="true"></i> by <a href="https://colorlib.com" target="_blank">Colorlib</a>
<!-- Link back to Colorlib can't be removed. Template is licensed under CC BY 3.0. --></p>
</div>
</footer>
<!-- footer_end -->
<!-- JS here -->
<script type="text/javascript">
function csv2array(data, delimeter) {
// Retrieve the delimeter
if (delimeter == undefined)
delimeter = ',';
if (delimeter && delimeter.length > 1)
delimeter = ',';
// initialize variables
var newline = '\n';
var eof = '';
var i = 0;
var c = data.charAt(i);
var row = 0;
var col = 0;
var array = new Array();
while (c != eof) {
// skip whitespaces
while (c == ' ' || c == '\t' || c == '\r') {
c = data.charAt(++i); // read next char
}
// get value
var value = "";
if (c == '\"') {
// value enclosed by double-quotes
c = data.charAt(++i);
do {
if (c != '\"') {
// read a regular character and go to the next character
value += c;
c = data.charAt(++i);
}
if (c == '\"') {
// check for escaped double-quote
var cnext = data.charAt(i + 1);
if (cnext == '\"') {
// this is an escaped double-quote.
// Add a double-quote to the value, and move two characters ahead.
value += '\"';
i += 2;
c = data.charAt(i);
}
}
}
while (c != eof && c != '\"');
if (c == eof) {
throw "Unexpected end of data, double-quote expected";
}
c = data.charAt(++i);
} else {
// value without quotes
while (c != eof && c != delimeter && c != newline && c != ' ' && c != '\t' && c != '\r' || c == '(' || c == ')') {
value += c;
c = data.charAt(++i);
}
}
// add the value to the array
if (array.length <= row)
array.push(new Array());
array[row].push(value);
// skip whitespaces
while (c == ' ' || c == '\t' || c == '\r') {
c = data.charAt(++i);
}
// go to the next row or column
if (c == delimeter) {
// to the next column
col++;
} else if (c == newline) {
// to the next row
col = 0;
row++;
}
/* else if (c != eof) {
// unexpected character
//throw c;
console.log(data.charAt(i));
throw "Delimiter expected after character " + i;
} */
// go to the next character
c = data.charAt(++i);
}
return array;
}
function generateHtmlTable(data, query = '') {
//alert("html data");
var html = '<font size="6" color="brown"><center><b>LIST OF ORGANISMS</b></center></font>';
if (typeof(data[0]) === 'undefined') {
return null;
} else {
html += '<table width="100%" align="center">';
html += '<thead><tr><th width="450px"><center><b>NAME OF THE ORGANISM</center></th><th width="60px"><center><b>ZIP FILES</b></center></th><th><center><b>SINGLE LETHAL REACTIONS</th><th><center><b>DOUBLE LETHAL REACTIONS</b></center></th> <th><center><b>TRIPLE LETHAL REACTIONS</center></th> <th><center><b>SINGLE LETHAL GENES</center></th><th><center><b>DOUBLE LETHAL GENES</center></th><th><center><b>TRIPLE LETHAL GENES</center></th></tr></thead><tbody>';
var flag = 0;
$.each(data, function(index, row) {
//bind header
$.each(row, function(index, colData)
//if(index==0)
{
if (index == 0) {
var org = colData.split(" ").join("_");
var words = colData.split(" ")
var org_proper = '<i>' + words[0] + ' ' + words[1] + '</i> ' + words[2] + ' ' + words[3]
var y = colData.toLowerCase();
if (y.includes(query)) {
html += '<tr>';
$.each(row, function(i, c) {
if (i == 0) {
html += '<td width="100px"><center><a href="Synthetic_Lethal/';
html += org;
html += '.html"><u>';
html += org_proper.replace(" undefined", "");
html += '</u></a></center>';
html += '</td>';
html += '<td><a href="zip/';
html += org;
html += '.zip" download>';
html += '<center><i class="fa fa-download" aria-hidden="true"></i></center></abbr></a></td>';
}
if (i == 1) {
var slr = "slr";
blank = "_blank";
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#slr';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
if (i == 2) {
var dlr = "dlr";
blank = "_blank";
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#dlr';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
if (i == 3) {
var tlr = "tlr";
blank = "_blank";
if (c == "-") {
html += '<td><center>';
html += c;
html += '</center></td>';
}
else {
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#tlr';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
}
if (i == 4) {
var slg = "slg";
blank = "_blank";
if (c == "-") {
html += '<td><center>';
html += c;
html += '</center></td>';
}
else {
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#slg';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
}
if (i == 5) {
var dlg = "dlg";
blank = "_blank";
if (c == "-") {
html += '<td><center>';
html += c;
html += '</center></td>';
}
else {
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#dlg';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
}
if (i == 6) {
var tlg = "tlg";
blank = "_blank";
if (c == "-") {
html += '<td><center>';
html += c;
html += '</center></td>';
}
else {
html += '<td><a href="Synthetic_Lethal/';
html += org;
html += '.html#tlg';
html += '"target=';
html += blank;
html += "'><font color='maroon'><u><center>";
html += c;
html += '</center></u></font></a></td>';
}
}
});
html += '</tr>';
flag = 1;
}
}
}
);
});
html += '</tbody>';
html += '</table>';
if (flag == 0) {
html = "<font face='Arial' size=6><center><b>No matches found!</b></center></font>";
}
//alert(html);
$('#out1').html(html);
}
}
$('#myTextbox1').on('input', function() {
query = document.getElementById("myTextbox1").value;
//console.log(query);
$("out").empty();
//var data = $.csv;
$.ajax({
type: "GET",
url: "master.csv",
dataType: "text",
success: function(response) {
//alert("success");
console.log(response);
//console.log(data);
//var dataArray = data.toArrays(response);
// debugging toArrays function by RAjiv
//a is a variable with undefined value
dataArray = csv2array(response, ',');
//console.log(test(dataArray)); //function call
generateHtmlTable(dataArray, query);
}
});
});
</script>
<script src="js/vendor/modernizr-3.5.0.min.js"></script>
<script src="js/vendor/jquery-1.12.4.min.js"></script>
<script src="js/popper.min.js"></script>
<script src="js/bootstrap.min.js"></script>
<script src="js/owl.carousel.min.js"></script>
<script src="js/isotope.pkgd.min.js"></script>
<script src="js/ajax-form.js"></script>
<script src="js/waypoints.min.js"></script>
<script src="js/jquery.counterup.min.js"></script>
<script src="js/imagesloaded.pkgd.min.js"></script>
<script src="js/scrollIt.js"></script>
<script src="js/jquery.scrollUp.min.js"></script>
<script src="js/wow.min.js"></script>
<script src="js/nice-select.min.js"></script>
<script src="js/jquery.slicknav.min.js"></script>
<script src="js/jquery.magnific-popup.min.js"></script>
<script src="js/plugins.js"></script>
<!--contact js-->
<script src="js/contact.js"></script>
<script src="js/jquery.ajaxchimp.min.js"></script>
<script src="js/jquery.form.js"></script>
<script src="js/jquery.validate.min.js"></script>
<script src="js/mail-script.js"></script>
<script src="js/main.js"></script>
</body>
</html>