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croton.py
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croton.py
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__author__ = "Florian Thiery"
__copyright__ = "MIT Licence 2023, Florian Thiery"
__credits__ = ["Florian Thiery"]
__license__ = "MIT"
__version__ = "beta"
__maintainer__ = "Florian Thiery"
__email__ = "mail@fthiery.de"
__status__ = "beta"
__update__ = "2023-08-10"
# import dependencies
import uuid
import requests
import io
import pandas as pd
import os
import codecs
import datetime
import importlib
import sys
import hashlib
# set UTF8 as default
importlib.reload(sys)
# set starttime
starttime = datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ")
lines = []
# set paths I
file_name = "igch.csv"
dir_path = os.path.dirname(os.path.realpath(__file__))
file_in = dir_path.replace("\\py", "\\csv") + "\\" + file_name
# read csv file
data = pd.read_csv(
file_in,
encoding='utf-8',
sep=',',
usecols=['id', 'label', 'desc', 'certainty', 'certaintyinfo', 'relatedto', 'relatedtohow', 'source',
'sourcetype', 'spatialtype', 'methodtype', 'agent', 'methoddesc', 'literature', 'wkt'],
na_values=['.', '??', 'NULL'] # take any '.' or '??' values as NA
)
print("*****************************************")
print(data.info())
# create triples from dataframe
lineNo = 2
for index, row in data.iterrows():
tmpno = lineNo - 2
lineNo += 1
# agent
agent = str(row['agent'])
agents = agent.split(";")
for i in agents:
tmp_agent_id = i.replace("http://orcid.org/", "")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " foaf:Person .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " prov:Agent .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "skos:exactMatch" + " <" + i + ">.")
# entity (site)
# typing
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " fsl:Site .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " prov:Entity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " pleiades:Place .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:partOf" + " fsl:CrotonProject .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:siteType" + " fsl:ArchaeologicalSite .")
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:label" + " '" + str(row['label']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:prefLabel" + " '" + str(row['label']) + "'@en.")
if str(row['desc']) != 'nan':
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:scopeNote" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:comment" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
# certainty
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# relations
relatedto = str(row['relatedto'])
relatedtos = relatedto.split(";")
for i in relatedtos:
lines.append("fsld:crotonsite_" + str(row['id']) +
" " + str(row['relatedtohow']) + " <" + i + ">.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:spatialType" + " " + str(row['spatialtype']) + ".")
# literature
if str(row['literature']) != 'nan':
lit = str(row['literature'])
lits = lit.split(";")
for i in lits:
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:hasReference" + " '" + i + "'.")
# site geometry
point = str(row['wkt'])
point = "\"<http://www.opengis.net/def/crs/EPSG/0/4326> " + \
point + "\"^^geosparql:wktLiteral"
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"geosparql:hasGeometry" + " fsld:crotonsite_" + str(row['id']) + "_geom .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "rdf:type" + " sf:Point .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "geosparql:asWKT " + point + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# activity
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " prov:Activity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " " + str(row['methodtype']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
# activity data
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSource" + " " + str(row['source']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSourceType" + " " + str(row['sourcetype']) + ".")
if str(row['literature']) != 'nan':
for i in lits:
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "fsl:hasReference" + " '" + i + "'.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:activityDesc" + " '" + str(row['methoddesc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# image?
if str(row['relatedto']) != 'nan':
for i in relatedtos:
if "png" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
if "jpg" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
# prov-o model
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "prov:wasGeneratedBy" +
" " + "fsld:crotonsite_" + str(row['id']) + "_activity.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:used " + "fsld:crotonsite_" + str(row['id']) + ".")
for i in agents:
lines.append(
"fsld:crotonsite_" + str(row['id']) + " " + "prov:wasAttributedTo" + " <" + i + ">.")
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "prov:wasAssociatedWith" + " <" + i + ">.")
# license
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:license" +
" <" + "https://creativecommons.org/licenses/by/4.0/" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
# prov-o for script
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasAttributedTo" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasGeneratedBy" + " fsld:crotonsite_" + str(row['id']) + "_pyscript .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "rdf:type" + " <http://www.w3.org/ns/prov#Activity> .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:wasAssociatedWith" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("")
# set paths II
file_name = "external.csv"
dir_path = os.path.dirname(os.path.realpath(__file__))
file_in = dir_path.replace("\\py", "\\csv") + "\\" + file_name
# read csv file
data = pd.read_csv(
file_in,
encoding='utf-8',
sep=',',
usecols=['id', 'label', 'desc', 'certainty', 'certaintyinfo', 'relatedto', 'relatedtohow', 'source',
'sourcetype', 'spatialtype', 'methodtype', 'agent', 'methoddesc', 'literature', 'wkt'],
na_values=['.', '??', 'NULL'] # take any '.' or '??' values as NA
)
print(data.info())
# create triples from dataframe
lineNo = 2
for index, row in data.iterrows():
tmpno = lineNo - 2
lineNo += 1
# agent
agent = str(row['agent'])
agents = agent.split(";")
for i in agents:
tmp_agent_id = i.replace("http://orcid.org/", "")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " foaf:Person .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " prov:Agent .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "skos:exactMatch" + " <" + i + ">.")
# entity (site)
# typing
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " fsl:Site .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " prov:Entity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " pleiades:Place .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:partOf" + " fsl:CrotonProject .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:siteType" + " fsl:ArchaeologicalSite .")
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:label" + " '" + str(row['label']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:prefLabel" + " '" + str(row['label']) + "'@en.")
if str(row['desc']) != 'nan':
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:scopeNote" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:comment" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
# certainty
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# relations
relatedto = str(row['relatedto'])
relatedtos = relatedto.split(";")
for i in relatedtos:
lines.append("fsld:crotonsite_" + str(row['id']) +
" " + str(row['relatedtohow']) + " <" + i + ">.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:spatialType" + " " + str(row['spatialtype']) + ".")
# literature
if str(row['literature']) != 'nan':
lit = str(row['literature'])
lits = lit.split(";")
for i in lits:
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:hasReference" + " '" + i + "'.")
# site geometry
point = str(row['wkt'])
point = "\"<http://www.opengis.net/def/crs/EPSG/0/4326> " + \
point + "\"^^geosparql:wktLiteral"
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"geosparql:hasGeometry" + " fsld:crotonsite_" + str(row['id']) + "_geom .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "rdf:type" + " sf:Point .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "geosparql:asWKT " + point + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# activity
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " prov:Activity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " " + str(row['methodtype']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
# activity data
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSource" + " " + str(row['source']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSourceType" + " " + str(row['sourcetype']) + ".")
if str(row['literature']) != 'nan':
for i in lits:
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "fsl:hasReference" + " '" + i + "'.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:activityDesc" + " '" + str(row['methoddesc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# image?
if str(row['relatedto']) != 'nan':
for i in relatedtos:
if "png" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
if "jpg" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
# prov-o model
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "prov:wasGeneratedBy" +
" " + "fsld:crotonsite_" + str(row['id']) + "_activity.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:used " + "fsld:crotonsite_" + str(row['id']) + ".")
for i in agents:
lines.append(
"fsld:crotonsite_" + str(row['id']) + " " + "prov:wasAttributedTo" + " <" + i + ">.")
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "prov:wasAssociatedWith" + " <" + i + ">.")
# license
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:license" +
" <" + "https://creativecommons.org/licenses/by/4.0/" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
# prov-o for script
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasAttributedTo" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasGeneratedBy" + " fsld:crotonsite_" + str(row['id']) + "_pyscript .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "rdf:type" + " <http://www.w3.org/ns/prov#Activity> .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:wasAssociatedWith" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("")
# set paths III
file_name = "literature.csv"
dir_path = os.path.dirname(os.path.realpath(__file__))
file_in = dir_path.replace("\\py", "\\csv") + "\\" + file_name
# read csv file
data = pd.read_csv(
file_in,
encoding='utf-8',
sep=',',
usecols=['id', 'label', 'desc', 'certainty', 'certaintyinfo', 'relatedto', 'relatedtohow', 'source',
'sourcetype', 'spatialtype', 'methodtype', 'agent', 'methoddesc', 'literature', 'wkt'],
na_values=['.', '??', 'NULL'] # take any '.' or '??' values as NA
)
print(data.info())
# create triples from dataframe
lineNo = 2
for index, row in data.iterrows():
tmpno = lineNo - 2
lineNo += 1
# agent
agent = str(row['agent'])
agents = agent.split(";")
for i in agents:
tmp_agent_id = i.replace("http://orcid.org/", "")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " foaf:Person .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "rdf:type" + " prov:Agent .")
lines.append("fsld:agent_" + tmp_agent_id +
" " + "skos:exactMatch" + " <" + i + ">.")
# entity (site)
# typing
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " fsl:Site .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " prov:Entity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdf:type" + " pleiades:Place .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:partOf" + " fsl:CrotonProject .")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:siteType" + " fsl:ArchaeologicalSite .")
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:label" + " '" + str(row['label']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:prefLabel" + " '" + str(row['label']) + "'@en.")
if str(row['desc']) != 'nan':
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "skos:scopeNote" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "rdfs:comment" + " '" + str(row['desc']) + "'@en.")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
# certainty
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# relations
relatedto = str(row['relatedto'])
relatedtos = relatedto.split(";")
for i in relatedtos:
lines.append("fsld:crotonsite_" + str(row['id']) +
" " + str(row['relatedtohow']) + " <" + i + ">.")
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:spatialType" + " " + str(row['spatialtype']) + ".")
# literature
if str(row['literature']) != 'nan':
lit = str(row['literature'])
lits = lit.split(";")
for i in lits:
lines.append("fsld:crotonsite_" +
str(row['id']) + " " + "fsl:hasReference" + " '" + i + "'.")
# site geometry
point = str(row['wkt'])
point = "\"<http://www.opengis.net/def/crs/EPSG/0/4326> " + \
point + "\"^^geosparql:wktLiteral"
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"geosparql:hasGeometry" + " fsld:crotonsite_" + str(row['id']) + "_geom .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "rdf:type" + " sf:Point .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "geosparql:asWKT " + point + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_geom " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# activity
# metadata
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " prov:Activity .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "rdf:type" + " " + str(row['methodtype']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
# activity data
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSource" + " " + str(row['source']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:hasSourceType" + " " + str(row['sourcetype']) + ".")
if str(row['literature']) != 'nan':
for i in lits:
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "fsl:hasReference" + " '" + i + "'.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:activityDesc" + " '" + str(row['methoddesc']) + "'@en.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyLevel" + " " + str(row['certainty']) + ".")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:certaintyDesc" + " '" + str(row['certaintyinfo']) + "'@en.")
# image?
if str(row['relatedto']) != 'nan':
for i in relatedtos:
if "png" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
if "jpg" in i:
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "fsl:image" + " <" + i + ">.")
# prov-o model
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "prov:wasGeneratedBy" +
" " + "fsld:crotonsite_" + str(row['id']) + "_activity.")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_activity " + "prov:used " + "fsld:crotonsite_" + str(row['id']) + ".")
for i in agents:
lines.append(
"fsld:crotonsite_" + str(row['id']) + " " + "prov:wasAttributedTo" + " <" + i + ">.")
lines.append(
"fsld:crotonsite_" + str(row['id']) + "_activity " + "prov:wasAssociatedWith" + " <" + i + ">.")
# license
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:license" +
" <" + "https://creativecommons.org/licenses/by/4.0/" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:creator" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0002-3246-3531" + "> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " + "dct:rightsHolder" +
" <" + "https://orcid.org/0000-0003-1100-6494" + "> .")
# prov-o for script
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasAttributedTo" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasDerivedFrom" + " <https://github.com/Research-Squirrel-Engineers/croton-geo> .")
lines.append("fsld:crotonsite_" + str(row['id']) + " " +
"prov:wasGeneratedBy" + " fsld:crotonsite_" + str(row['id']) + "_pyscript .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "rdf:type" + " <http://www.w3.org/ns/prov#Activity> .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:startedAtTime '" + starttime + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:endedAtTime '" +
datetime.datetime.now().strftime("%Y-%m-%dT%H:%M:%S.%fZ") + "'^^xsd:dateTime .")
lines.append("fsld:crotonsite_" +
str(row['id']) + "_pyscript " + "prov:wasAssociatedWith" + " <https://github.com/Research-Squirrel-Engineers/croton-geo/blob/main/py/croton.py> .")
lines.append("")
files = (len(lines) / 100000) + 1
print("triples", len(lines), "files", int(files))
thiscount = len(lines)
# write output files
f = 0
step = 100000
prefixes = ""
prefixes += "@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .\r\n"
prefixes += "@prefix owl: <http://www.w3.org/2002/07/owl#> .\r\n"
prefixes += "@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .\r\n"
prefixes += "@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .\r\n"
prefixes += "@prefix geosparql: <http://www.opengis.net/ont/geosparql#> .\r\n"
prefixes += "@prefix dc: <http://purl.org/dc/elements/1.1/> .\r\n"
prefixes += "@prefix dct: <http://purl.org/dc/terms/> .\r\n"
prefixes += "@prefix sf: <http://www.opengis.net/ont/sf#> .\r\n"
prefixes += "@prefix prov: <http://www.w3.org/ns/prov#> .\r\n"
prefixes += "@prefix foaf: <http://xmlns.com/foaf/0.1/> .\r\n"
prefixes += "@prefix skos: <http://www.w3.org/2004/02/skos/core#> .\r\n"
prefixes += "@prefix pleiades: <https://pleiades.stoa.org/places/vocab#> .\r\n"
prefixes += "@prefix wikidata: <http://wikidata.org/entity/> .\r\n"
prefixes += "@prefix osmn: <http://openopenstreetmap.org/node/> .\r\n"
prefixes += "@prefix osmr: <http://openopenstreetmap.org/relation/> .\r\n"
prefixes += "@prefix osmw: <http://openopenstreetmap.org/way/> .\r\n"
prefixes += "@prefix idaigaz: <https://gazetteer.dainst.org/place/> .\r\n"
prefixes += "@prefix pleiadesp: <https://pleiades.stoa.org/places/> .\r\n"
prefixes += "@prefix fsl: <http://fuzzy-sl.squirrel.link/ontology/> .\r\n"
prefixes += "@prefix fsld: <http://fuzzy-sl.squirrel.link/data/> .\r\n"
prefixes += "\r\n"
for x in range(1, int(files) + 1):
strX = str(x)
filename = dir_path.replace("\\py", "\\rdf") + \
"\\" + "croton.ttl"
file = codecs.open(filename, "w", "utf-8")
file.write(
"# create triples from https://github.com/Research-Squirrel-Engineers/croton-geo \r\n")
file.write(
"# on " + datetime.datetime.now().strftime("%Y-%m-%d %H:%M") + "\r\n\r\n")
file.write(prefixes)
i = f
for i, line in enumerate(lines):
if (i > f - 1 and i < f + step):
file.write(line)
file.write("\r\n")
f = f + step
print(" > croton.ttl")
file.close()
print("*****************************************")
print("SUCCESS: closing script")
print("*****************************************")