- aldose
- AndResidueSelector
- angle_max()
- annotated_sequence()
- Antibody
- assign()
- asymmetric
- Atom objects
- atom_index()
- AtomID
- boltzmann()
- bond_angle()
- bond_length()
- Bundle
- BundleGridSampler
- CA_rmsd()
- carbohydrate
- cartesian
- CDR
- CDRResidueSelector
- centroid
- chain()
- ChainSelector
- ClassicFragmentMover()
- classify_base_pairs
- cleanATOM
- clone()
- conf2pdb_chain()
- conformation()
- create_score_function()
- crystal
- density
- design
- DockingSlideIntoContact()
- DockMCMProtocol()
- EDGE
- EM
- EMapVector()
- energies()
- etable_atom_pair_energies()
- fa_standard
- FaDockingSlideIntoContact()
- FARFAR protocol
- FastDesign
- FastRelax
- FFT
- fold_tree()
- furanose
- get_hbonds()
- get_residues_from_subset
- get_score_function()
- getPoseExtraScore
- glucose
- glycan
- GlycanTreeSet
- HBNet
- help()
- IncludeCurrent
- InitializeFromCommandline
- InterGroupInterfaceByVectorSelector
- Jump
- keep_history()
- ketose
- label_energy()
- LoadDensityMapMover
- MakeBundle
- mannose
- map
- Metropolis
- MinMover()
- MonteCarlo()
- MoveMap
- MoveMapFactory
- Mover
- mutate_position
- NeighborhoodResidueSelector
- nhbonds()
- NoRepackDisulfides
- NotResidueSelector
- number()
- OperateOnResidueSubset
- OperateOnResidueSubsetOperation
- output_decoy()
- PackRotamersMover
- Parametric
- pdb2pose()
- phi()
- Pose()
- pose2pdb()
- pose_from_pdb()
- pose_from_rcsb
- pose_from_rcsb()
- pose_from_sequence()
- prediction
- PreventRepackingRLT
- psi()
- PyJobDistributor()
- PyMOLMover
- pyranose
- RAbD
- random move
- read_fragment_file()
- ReadResfile
- refinement
- RepeatMover()
- Resfile
- ResfileCommandOperation
- residue_hbonds()
- residue_total_energies()
- ResidueNameSelector
- ResiduePDBInfoHasLabelSelector
- ResiduePropertySelector
- ResidueSelector
- RestrictAbsentCanonicalAASRLT
- RestrictToRepacking
- RestrictToRepackingRLT
- ReturnSidechainMover()
- RigidBodyPerturbMover()
- RNA fragment assembly
- RNA minimize
- RNA motifs
- RNA score terms
- RNA thread
- RNA torsions
- rna_denovo
- RNA_HelixAssembler
- RosettaAntibody
- RosettaAntibodyDesign
- RosettaScripts
- saccharide
- score function
- score3
- ScoreFunction()
- scoring move
- script
- send_energy()
- send_hbonds()
- sequence()
- SequenceMetric
- SequenceMover()
- set_bb()
- set_phi()
- set_psi()
- set_weight()
- SetupForSymmetryMover
- ShearMover()
- show()
- SimpleMetric
- SmallMover()
- sugar
- SwitchResidueTypeMover()
- SwitchResidueTypeSetMover()
- symmetry
- TaskFactory
- TaskOperation
- total_residue()
- TrialMover()
- virtual
- X-ray
- xml
- XMLObjects
- xyz()
- ZDOCK