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missing file in pdb100_2021Mar03.tar.gz #108

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abotzki opened this issue Dec 26, 2021 · 2 comments
Closed

missing file in pdb100_2021Mar03.tar.gz #108

abotzki opened this issue Dec 26, 2021 · 2 comments

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@abotzki
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abotzki commented Dec 26, 2021

Hi, after downloading the pdb100 tar.gz file pdb100_2021Mar03.tar.gz on 2021-12-22 19:47:24 (saved size 122925018497/122925018497) from https://files.ipd.uw.edu/pub/RoseTTAFold and unzipping it, I observe that this gives the following file listing:

355015504 -rw-r----- 1 vsc3152 vsc3152 363535738880 Dec 22 23:24 pdb100_2021Mar03_a3m.ffdata
     3988 -rw-r----- 1 vsc3152 vsc3152      4081070 Jul  6 06:20 pdb100_2021Mar03_a3m.ffindex
    42768 -rw-r----- 1 vsc3152 vsc3152     43786685 Jul  1 06:38 pdb100_2021Mar03_cs219.ffdata
  7130788 -rw-r----- 1 vsc3152 vsc3152   7301887045 Jul  1 06:39 pdb100_2021Mar03_hhm.ffdata
     3536 -rw-r----- 1 vsc3152 vsc3152      3617424 Jul  1 06:39 pdb100_2021Mar03_hhm.ffindex
 27430292 -rw-r----- 1 vsc3152 vsc3152  28088579632 Jul  1 06:50 pdb100_2021Mar03_pdb.ffdata

When checking, the tar file:

$ tar -ztvf pdb100_2021Mar03.tar.gz
drwxr-xr-x minkbaek/baker    0 2021-07-06 06:22 pdb100_2021Mar03/
-rw-r--r-- minkbaek/baker 43786685 2021-07-01 06:38 pdb100_2021Mar03/pdb100_2021Mar03_cs219.ffdata
-rw-r--r-- minkbaek/baker 28088579632 2021-07-01 06:50 pdb100_2021Mar03/pdb100_2021Mar03_pdb.ffdata
-rw-r--r-- minkbaek/baker  7301887045 2021-07-01 06:39 pdb100_2021Mar03/pdb100_2021Mar03_hhm.ffdata
-rw-r--r-- minkbaek/baker     4081070 2021-07-06 06:20 pdb100_2021Mar03/pdb100_2021Mar03_a3m.ffindex
-rw-r--r-- minkbaek/baker     3617424 2021-07-01 06:39 pdb100_2021Mar03/pdb100_2021Mar03_hhm.ffindex
-rw-r--r-- minkbaek/baker 680612797296 2021-07-06 06:55 pdb100_2021Mar03/pdb100_2021Mar03_a3m.ffdata
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now

Did anyone else observe this problem, too?
If yes, would it be possible to provide a new file for download?
Thanks a lot.

@abotzki
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abotzki commented Jan 24, 2022

thanks @minkbaek for the update of the download files!

@abotzki abotzki closed this as completed Jan 24, 2022
@AAVwhit
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AAVwhit commented Mar 16, 2023

Hi! I am having this same issue. Where is the new file that was provided?

Thank you!

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