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Model diffs

When making changes to a model within gsmodutils the gsmodutils.GSModuitlsModel instances (which is subclass of cobra.Model) allows you to track the differences between the in memory model and the model or design saved on disk. For example:

import gsmodutils
project = gsmodutils.GSMProject()
model = project.load_model()

model.remove_reactions([model.reactions.RXN_01])

diff = model.diff()
diff

Diff is gsmodutils.model_diff.ModelDiff object which is just a subclass of a python dictionary. If working within an jupyter notebook diff will display the model changes in HTML.

If working outside of as gsmodutils project with cobra models use:

from gsmodutils.model_diff import ModelDiff
diff = ModelDiff.model_diff(model_a, model_b)
diff

ModelDiff class

gsmodutils.model_diff