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Add scripts to load HealthPro data into Constrack and check and map A…
…oU IDs to Constrack MRNs
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DECLARE | ||
CURSOR C_HEALTH_PRO_VIEW | ||
IS | ||
SELECT * FROM HEALTH_PRO_VIEW; | ||
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||
R_HEALTH_PRO_VIEW C_HEALTH_PRO_VIEW%ROWTYPE; | ||
TYPE PMI_ID_LIST IS VARRAY(1000) OF HEALTH_PRO_VIEW.PMI_ID%TYPE; | ||
A_NOT_IN_HEALTHPRO PMI_ID_LIST := PMI_ID_LIST(); | ||
V_NOT_IN_HEALTHPRO_COUNTER INTEGER; | ||
A_LASTNAME_MISMATCH PMI_ID_LIST := PMI_ID_LIST(); | ||
V_LASTNAME_MISMATCH_COUNTER INTEGER; | ||
A_DOB_MISMATCH PMI_ID_LIST := PMI_ID_LIST(); | ||
V_VALID_COUNTER INTEGER; | ||
A_VALID PMI_ID_LIST := PMI_ID_LIST(); | ||
V_DOB_MISMATCH_COUNTER INTEGER; | ||
V_NOT_VALIDATED_COUNTER INTEGER; | ||
A_NOT_VALIDATED PMI_ID_LIST := PMI_ID_LIST(); | ||
V_WITHDRAWN_COUNTER INTEGER; | ||
A_WITHDRAWN PMI_ID_LIST := PMI_ID_LIST(); | ||
V_NOT_CONSENTED_TO_EHR_COUNTER INTEGER; | ||
A_NOT_CONSENTED_TO_EHR PMI_ID_LIST := PMI_ID_LIST(); | ||
V_NOT_CONSENTED_COUNTER INTEGER; | ||
A_NOT_CONSENTED PMI_ID_LIST := PMI_ID_LIST(); | ||
V_SUCCESSFUL BOOLEAN; | ||
V_FAILED_LASTNAME_CHECK BOOLEAN; | ||
V_FAILED_DOB_CHECK BOOLEAN; | ||
V_SHOW_ERRORS BOOLEAN; | ||
V_SHOW_MAPPINGS BOOLEAN; | ||
BEGIN | ||
------------------------------------------------------------------------------------ | ||
-- CHANGE THESE VALUES DEPENDING ON WHAT INFORMATION YOU WANT TO SEE | ||
------------------------------------------------------------------------------------ | ||
V_SHOW_ERRORS := FALSE; | ||
V_SHOW_MAPPINGS := TRUE; | ||
------------------------------------------------------------------------------------ | ||
--INITIALIZE | ||
V_NOT_IN_HEALTHPRO_COUNTER := 0; | ||
V_LASTNAME_MISMATCH_COUNTER := 0; | ||
V_DOB_MISMATCH_COUNTER := 0; | ||
V_NOT_VALIDATED_COUNTER :=0; | ||
V_NOT_CONSENTED_COUNTER := 0; | ||
V_NOT_CONSENTED_TO_EHR_COUNTER := 0; | ||
V_WITHDRAWN_COUNTER :=0; | ||
V_VALID_COUNTER :=0; | ||
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FOR R_HEALTH_PRO_VIEW | ||
IN C_HEALTH_PRO_VIEW | ||
LOOP | ||
V_SUCCESSFUL := TRUE; | ||
V_FAILED_LASTNAME_CHECK := FALSE; | ||
V_FAILED_DOB_CHECK := FALSE; | ||
--CHECK FOR PRESENCE IN HEALTH PRO | ||
IF R_HEALTH_PRO_VIEW.HP_PMI_ID IS NULL THEN | ||
V_NOT_IN_HEALTHPRO_COUNTER := V_NOT_IN_HEALTHPRO_COUNTER + 1; | ||
A_NOT_IN_HEALTHPRO.EXTEND; | ||
A_NOT_IN_HEALTHPRO(V_NOT_IN_HEALTHPRO_COUNTER) := R_HEALTH_PRO_VIEW.PMI_ID; | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
--CHECK FOR ID_VALIDATION | ||
IF UPPER(R_HEALTH_PRO_VIEW.VALIDATED_ID) = 'NO' THEN | ||
V_NOT_VALIDATED_COUNTER := V_NOT_VALIDATED_COUNTER + 1; | ||
A_NOT_VALIDATED.EXTEND; | ||
A_NOT_VALIDATED(V_NOT_VALIDATED_COUNTER) := R_HEALTH_PRO_VIEW.PMI_ID; | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
--CHECK FOR CONSENT | ||
IF R_HEALTH_PRO_VIEW.HP_GENERAL_CONSENT_STATUS != 1 THEN | ||
V_NOT_CONSENTED_COUNTER := V_NOT_CONSENTED_COUNTER + 1; | ||
A_NOT_CONSENTED.EXTEND; | ||
A_NOT_CONSENTED(V_NOT_CONSENTED_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
--CHECK FOR CONSENT TO EHR | ||
IF R_HEALTH_PRO_VIEW.HP_EHR_CONSENT_STATUS != 1 THEN | ||
V_NOT_CONSENTED_TO_EHR_COUNTER := V_NOT_CONSENTED_TO_EHR_COUNTER + 1; | ||
A_NOT_CONSENTED_TO_EHR.EXTEND; | ||
A_NOT_CONSENTED_TO_EHR(V_NOT_CONSENTED_TO_EHR_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
--CHECK FOR WITHDRAWAL | ||
IF R_HEALTH_PRO_VIEW.HP_WITHDRAWAL_STATUS = 1 THEN | ||
V_WITHDRAWN_COUNTER := V_WITHDRAWN_COUNTER + 1; | ||
A_WITHDRAWN.EXTEND; | ||
A_WITHDRAWN(V_WITHDRAWN_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
--CHECK FOR LASTNAME | ||
IF UPPER(R_HEALTH_PRO_VIEW.HP_LAST_NAME) != UPPER(R_HEALTH_PRO_VIEW.LAST_NAME) THEN | ||
V_LASTNAME_MISMATCH_COUNTER := V_LASTNAME_MISMATCH_COUNTER + 1; | ||
A_LASTNAME_MISMATCH.EXTEND; | ||
A_LASTNAME_MISMATCH(V_LASTNAME_MISMATCH_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
V_FAILED_LASTNAME_CHECK := TRUE; | ||
END IF; | ||
--CHECK FOR DOB | ||
IF UPPER(R_HEALTH_PRO_VIEW.HP_DATE_OF_BIRTH) != UPPER(R_HEALTH_PRO_VIEW.DATE_OF_BIRTH) THEN | ||
V_DOB_MISMATCH_COUNTER := V_DOB_MISMATCH_COUNTER + 1; | ||
A_DOB_MISMATCH.EXTEND; | ||
A_DOB_MISMATCH(V_DOB_MISMATCH_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
V_FAILED_DOB_CHECK := TRUE; | ||
END IF; | ||
-- IF BOTH FAILED THEN DON'T ADD | ||
IF (V_FAILED_LASTNAME_CHECK AND V_FAILED_DOB_CHECK) THEN | ||
V_SUCCESSFUL := FALSE; | ||
END IF; | ||
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--DBMS_OUTPUT.PUT_LINE('DEBUG: Successful: ' || BOOLEAN_TO_VARCHAR(V_SUCCESSFUL) || ', MRN: ' || R_HEALTH_PRO_VIEW.MRN || ', MRN_FACILITY: ' || R_HEALTH_PRO_VIEW.MRN_FACILITY); | ||
IF V_SUCCESSFUL AND R_HEALTH_PRO_VIEW.MRN IS NOT NULL AND R_HEALTH_PRO_VIEW.MRN_FACILITY IS NOT NULL THEN | ||
V_VALID_COUNTER := V_VALID_COUNTER + 1; | ||
A_VALID.EXTEND; | ||
A_VALID(V_VALID_COUNTER) := R_HEALTH_PRO_VIEW.HP_PMI_ID; | ||
END IF; | ||
END LOOP; | ||
--REPORT RESULTS | ||
IF V_SHOW_ERRORS THEN | ||
--REPORT MISSING PMI_IDS IF ANY | ||
IF V_NOT_IN_HEALTHPRO_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('ERROR: FOLLOWING PMI_IDS ARE IN CONSTRACK BUT NOT IN HEALTHPRO'); | ||
FOR i IN 1..A_NOT_IN_HEALTHPRO.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_NOT_IN_HEALTHPRO(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT UNVALIDATED IDS IF ANY | ||
IF V_DOB_MISMATCH_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('ERROR: FOLLOWING PMI_IDS ARE FOR PATIENTS WHOS ID HAVE NOT BEEN VALIDATED'); | ||
FOR i IN 1..A_NOT_VALIDATED.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_NOT_VALIDATED(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT NOT CONSENTED TO THE EHR IF ANY | ||
IF V_NOT_CONSENTED_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('ERROR: FOLLOWING PMI_IDS ARE FOR PATIENTS WHO HAVE NOT CONSENTED'); | ||
FOR i IN 1..A_NOT_CONSENTED.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_NOT_CONSENTED(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT NOT CONSENTED TO THE EHR IF ANY | ||
IF V_WITHDRAWN_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('ERROR: FOLLOWING PMI_IDS ARE FOR PATIENTS WHO HAVE WITHDRAWN'); | ||
FOR i IN 1..A_WITHDRAWN.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_WITHDRAWN(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT NOT CONSENTED TO THE EHR IF ANY | ||
IF A_NOT_CONSENTED_TO_EHR.COUNT > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('ERROR: FOLLOWING PMI_IDS ARE FOR PATIENTS WHO HAVE NOT CONSENTED TO THE EHR'); | ||
FOR i IN 1..A_NOT_CONSENTED_TO_EHR.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_NOT_CONSENTED_TO_EHR(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT MISMATCHED LAST_NAMES IF ANY | ||
IF V_LASTNAME_MISMATCH_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('WARNING: FOLLOWING PMI_IDS ARE FOR PATIENTS WITH LASTNAMES THAT DO NOT MATCH'); | ||
FOR i IN 1..A_LASTNAME_MISMATCH.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_LASTNAME_MISMATCH(i)); | ||
END LOOP; | ||
END IF; | ||
--REPORT MISMATCHED DOB IF ANY | ||
IF V_DOB_MISMATCH_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('WARNING: FOLLOWING PMI_IDS ARE FOR PATIENTS WITH DOBS THAT DO NOT MATCH'); | ||
FOR i IN 1..A_DOB_MISMATCH.COUNT LOOP | ||
DBMS_OUTPUT.PUT_LINE('' || A_DOB_MISMATCH(i)); | ||
END LOOP; | ||
END IF; | ||
END IF; | ||
--REPORT MAPPING | ||
IF V_SHOW_MAPPINGS THEN | ||
IF V_VALID_COUNTER > 0 THEN | ||
DBMS_OUTPUT.PUT_LINE('MRN, MRN_FACILITY, PMI_ID'); | ||
FOR i IN 1..A_VALID.COUNT LOOP | ||
SELECT * INTO R_HEALTH_PRO_VIEW FROM HEALTH_PRO_VIEW HPV WHERE HPV.PMI_ID = A_VALID(i); | ||
DBMS_OUTPUT.PUT_LINE(R_HEALTH_PRO_VIEW.MRN||', '||R_HEALTH_PRO_VIEW.MRN_FACILITY||', '||TO_NUMBER(SUBSTR(A_VALID(i),2))); | ||
END LOOP; | ||
END IF; | ||
END IF; | ||
END; |
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CREATE TABLE HEALTH_PRO_DATA ( PMI_ID VARCHAR2(10) NOT NULL, | ||
Biobank_ID VARCHAR2(10), | ||
Last_Name VARCHAR2(80), | ||
First_Name VARCHAR2(80), | ||
Date_of_Birth DATE, | ||
Language VARCHAR2(80), | ||
General_Consent_Status INTEGER, | ||
General_Consent_Date DATE, | ||
EHR_Consent_Status INTEGER, | ||
EHR_Consent_Date DATE, | ||
CABoR_Consent_Status INTEGER, | ||
CABoR_Consent_Date DATE, | ||
Withdrawal_Status INTEGER, | ||
Withdrawal_Date DATE, | ||
Street_Address VARCHAR2(255), | ||
City VARCHAR2(80), | ||
State VARCHAR2(2), | ||
ZIP VARCHAR2(10), | ||
Email VARCHAR2(255), | ||
Phone VARCHAR2(14), | ||
Sex VARCHAR2(80), | ||
Gender_Identity VARCHAR2(80), | ||
Sexual_Orientation VARCHAR2(80), | ||
Race_Ethnicity VARCHAR2(80), | ||
Education VARCHAR2(80), | ||
Income VARCHAR2(80), | ||
Required_PPI_Surveys_Complete INTEGER, | ||
Completed_Surveys INTEGER, | ||
Basics_PPI_Survey_Complete INTEGER, | ||
Basics_PPI_Survey_Date DATE, | ||
Health_PPI_Survey_Complete INTEGER, | ||
Health_PPI_Survey_Date DATE, | ||
Lifestyle_PPI_Survey_Complete INTEGER, | ||
Lifestyle_PPI_Survey_Date DATE, | ||
Hist_PPI_Survey_Complete INTEGER, | ||
Hist_PPI_Survey_Date DATE, | ||
Meds_PPI_Survey_Complete INTEGER, | ||
Meds_PPI_Survey_Date DATE, | ||
Family_PPI_Survey_Complete NUMBER(3), | ||
Family_PPI_Survey_Date DATE, | ||
Access_PPI_Survey_Complete INTEGER, | ||
Access_PPI_Survey_Date DATE, | ||
Physical_Measurements_Status INTEGER, | ||
Physical_Measurements_Date DATE, | ||
Samples_for_DNA_Received INTEGER, | ||
Biospecimens INTEGER, | ||
SST_Collected INTEGER, | ||
SST_Collection_Date DATE, | ||
PST_Collected INTEGER, | ||
PST_Collection_Date DATE, | ||
NaHep_Collected INTEGER, | ||
NaHep_Collection_Date DATE, | ||
EDTA_Collected INTEGER, | ||
EDTA_Collection_Date INTEGER, | ||
EDTA1_Collected INTEGER, | ||
EDTA1_Collection_Date DATE, | ||
EDTA2_Collected INTEGER, | ||
EDTA2_Collection_Date DATE, | ||
Urine_10_mL_Collected INTEGER, | ||
Urine_Colletction_Date DATE, | ||
Saliva_Collected INTEGER, | ||
Saliva_Collection_Date DATE); | ||
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-------------------------------------------------------- | ||
-- DDL for View HEALTH_PRO_VIEW | ||
-------------------------------------------------------- | ||
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CREATE OR REPLACE FORCE VIEW "HEALTH_PRO_VIEW" ("HP_PMI_ID", "HP_LAST_NAME", "HP_FIRST_NAME", "HP_DATE_OF_BIRTH", "HP_GENERAL_CONSENT_STATUS", "HP_GENERAL_CONSENT_DATE", "HP_EHR_CONSENT_STATUS", "HP_EHR_CONSENT_DATE", "HP_WITHDRAWAL_STATUS", "HP_WITHDRAWAL_DATE", "PMI_ID", "MRN", "MRN_FACILITY", "LAST_NAME", "DATE_OF_BIRTH", "CONSENT_DATE", "CURRENT_STATUS", "VALIDATED_ID") AS | ||
SELECT | ||
"HP_PMI_ID","HP_LAST_NAME","HP_FIRST_NAME","HP_DATE_OF_BIRTH","HP_GENERAL_CONSENT_STATUS","HP_GENERAL_CONSENT_DATE","HP_EHR_CONSENT_STATUS","HP_EHR_CONSENT_DATE","HP_WITHDRAWAL_STATUS","HP_WITHDRAWAL_DATE","PMI_ID","MRN","MRN_FACILITY","LASTNAME", "DOB", "CONSENT_DATE","CURRENT_STATUS", "VALIDATED_ID" | ||
FROM | ||
(SELECT PMI_ID AS HP_PMI_ID, LAST_NAME AS HP_LAST_NAME, FIRST_NAME AS HP_FIRST_NAME, DATE_OF_BIRTH AS HP_DATE_OF_BIRTH, GENERAL_CONSENT_STATUS AS HP_GENERAL_CONSENT_STATUS, GENERAL_CONSENT_DATE AS HP_GENERAL_CONSENT_DATE, EHR_CONSENT_STATUS AS HP_EHR_CONSENT_STATUS, EHR_CONSENT_DATE AS HP_EHR_CONSENT_DATE, WITHDRAWAL_STATUS AS HP_WITHDRAWAL_STATUS, WITHDRAWAL_DATE AS HP_WITHDRAWAL_DATE FROM HEALTH_PRO_DATA) HPD | ||
FULL OUTER JOIN | ||
(SELECT SID.STUDY_ID AS PMI_ID, M.MRN, MF.NAME AS MRN_FACILITY, P.LASTNAME, P.DOB, PC.CONSENT_DATE, C.TEXT AS CURRENT_STATUS, VALIDATED.TEXT AS VALIDATED_ID FROM PATIENT_CONSENT PC | ||
JOIN CONSENT_FORM CF ON PC.CONSENT_FORM_FK = CF.ID | ||
JOIN IRB_PROTOCOL IRB ON CF.IRB_PROTOCOL_FK = IRB.ID AND IRB.PROTOCOL_NUMBER = '2016P111111' | ||
JOIN MRN M ON PC.MRN_FK = M.ID | ||
JOIN MRN_FACILITY MF ON M.MRN_FACILITY_FK = MF.ID | ||
JOIN PATIENT P ON P.ID = M.PATIENT_FK | ||
JOIN (SELECT STUDY_ID.PATIENT_FK, STUDY_ID.STUDY_ID FROM STUDY_ID JOIN IRB_PROTOCOL IRB ON STUDY_ID.IRB_PROTOCOL_FK = IRB.ID AND IRB.PROTOCOL_NUMBER = '2016P111111') SID ON SID.PATIENT_FK = P.ID | ||
JOIN PT_CONSENT_STATUS PCS ON PC.ID = PCS.PATIENT_CONSENT_FK | ||
JOIN CONSENT_STATUS_SINGLE CSS ON PCS.ID = CSS.ID | ||
JOIN QUESTION Q ON PCS.QUESTION_FK = Q.ID | ||
JOIN QUESTION_TYPE QT ON QT.ID = Q.QUESTION_TYPE_FK AND QT.TYPE = 'Consent' | ||
JOIN CHOICE C ON CSS.CHOICE_FK = C.ID AND C.TEXT IN ('Consented') | ||
JOIN (SELECT PCS.PATIENT_CONSENT_FK, C.TEXT FROM PT_CONSENT_STATUS PCS | ||
JOIN CONSENT_STATUS_SINGLE CSS ON PCS.ID = CSS.ID | ||
JOIN QUESTION Q ON PCS.QUESTION_FK = Q.ID | ||
JOIN QUESTION_TAG QTAG ON QTAG.QUESTION_FK = Q.ID | ||
JOIN TAG T ON T.ID = QTAG.TAG_FK AND T.CODE = 'VID' | ||
JOIN CHOICE C ON C.ID = CSS.CHOICE_FK) VALIDATED ON VALIDATED.PATIENT_CONSENT_FK = PC.ID) PMI_CONSENTED ON PMI_CONSENTED.PMI_ID = HPD.HP_PMI_ID; |
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load data | ||
truncate | ||
into table HEALTH_PRO_DATA | ||
fields terminated by ',' | ||
OPTIONALLY ENCLOSED BY '"' AND '"' | ||
trailing nullcols | ||
( PMI_ID CHAR(4000), | ||
Biobank_ID CHAR(4000), | ||
Last_Name CHAR(4000), | ||
First_Name CHAR(4000), | ||
Date_of_Birth DATE "MM/DD/YYYY", | ||
Language CHAR(4000), | ||
General_Consent_Status CHAR(4000), | ||
General_Consent_Date DATE "MM/DD/YYYY", | ||
EHR_Consent_Status CHAR(4000), | ||
EHR_Consent_Date DATE "MM/DD/YYYY", | ||
CABoR_Consent_Status CHAR(4000), | ||
CABoR_Consent_Date DATE "MM/DD/YYYY", | ||
Withdrawal_Status CHAR(4000), | ||
Withdrawal_Date DATE "MM/DD/YYYY", | ||
Street_Address CHAR(4000), | ||
City CHAR(4000), | ||
State CHAR(4000), | ||
ZIP CHAR(4000), | ||
Email CHAR(4000), | ||
Phone CHAR(4000), | ||
Sex CHAR(4000), | ||
Gender_Identity CHAR(4000), | ||
Sexual_Orientation CHAR(4000), | ||
Race_Ethnicity CHAR(4000), | ||
Education CHAR(4000), | ||
Income CHAR(4000), | ||
Required_PPI_Surveys_Complete CHAR(4000), | ||
Completed_Surveys CHAR(4000), | ||
Basics_PPI_Survey_Complete CHAR(4000), | ||
Basics_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Health_PPI_Survey_Complete CHAR(4000), | ||
Health_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Lifestyle_PPI_Survey_Complete CHAR(4000), | ||
Lifestyle_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Hist_PPI_Survey_Complete CHAR(4000), | ||
Hist_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Meds_PPI_Survey_Complete CHAR(4000), | ||
Meds_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Family_PPI_Survey_Complete CHAR(4000), | ||
Family_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Access_PPI_Survey_Complete CHAR(4000), | ||
Access_PPI_Survey_Date DATE "MM/DD/YYYY", | ||
Physical_Measurements_Status CHAR(4000), | ||
Physical_Measurements_Date DATE "MM/DD/YYYY", | ||
Samples_for_DNA_Received CHAR(4000), | ||
Biospecimens CHAR(4000), | ||
SST_Collected CHAR(4000), | ||
SST_Collection_Date DATE "MM/DD/YYYY", | ||
PST_Collected CHAR(4000), | ||
PST_Collection_Date DATE "MM/DD/YYYY", | ||
NaHep_Collected CHAR(4000), | ||
NaHep_Collection_Date DATE "MM/DD/YYYY", | ||
EDTA_Collected CHAR(4000), | ||
EDTA_Collection_Date CHAR(4000), | ||
EDTA1_Collected CHAR(4000), | ||
EDTA1_Collection_Date DATE "MM/DD/YYYY", | ||
EDTA2_Collected CHAR(4000), | ||
EDTA2_Collection_Date DATE "MM/DD/YYYY", | ||
Urine_10_mL_Collected CHAR(4000), | ||
Urine_Colletction_Date DATE "MM/DD/YYYY", | ||
Saliva_Collected CHAR(4000), | ||
Saliva_Collection_Date DATE "MM/DD/YYYY" | ||
) |
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Create_Health_Pro_Data_Table.sql will create a table for storing a health pro 'work queue' | ||
Health_Pro_data.ctl is a SQLLDR control file for importing health pro a 'work queue' into the Health_Pro_Data table | ||
HealthProView.sql defines a table that joins Health Pro data to AoU consents tracked in Constrack | ||
AOU_Matching.sql is a PL/SQL script that checks the data for issues and generates a Mapping between MRNs and AoU participant ids for use in the EHR ETL at PHS | ||
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