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<li class="home"><a href="index.html">Home</a></li>
<li class="faq"><a href="faq.html">FAQ</a></li>
<li class="syllabus"><a href="syllabus.html">Syllabus</a></li>
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<li class="people"><a href="people.html">People</a></li>
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<div class="fluid-row" id="header">




</div>

<div id="TOC">
<ul>
<li><a href="#cm001-2016-09-05-tuesday-overview">cm001 2016-09-05 Tuesday overview</a><ul>
<li><a href="#slides-and-links">Slides and links</a></li>
<li><a href="#register-a-github-account">Register a GitHub account</a></li>
<li><a href="#r-and-rstudio">R and RStudio</a></li>
<li><a href="#github-and-git-client">Git(Hub) and Git client</a></li>
<li><a href="#twitter">Twitter</a></li>
<li><a href="#rpubs">RPubs</a></li>
</ul></li>
</ul>
</div>

<div id="cm001-2016-09-05-tuesday-overview" class="section level3">
<h3>cm001 2016-09-05 Tuesday overview</h3>
<ul>
<li>Introduction to the course</li>
<li>Students to do for Thurday 2016-09-08 (more below)
<ul>
<li>install software</li>
<li>sign up for accounts</li>
</ul></li>
<li>Don’t panic if there are glitches. That’s normal. Come to <a href="https://github.com/STAT545-UBC/Discussion/issues/312">office hours</a> and start using our <a href="https://github.com/STAT545-UBC/Discussion/issues">Discussion repo</a> to <a href="http://stat545-ubc.github.io/help-STAT545.html">ask for help</a>.</li>
<li>What’s coming? We’ll help you begin to use all your new toys on Thursday!</li>
</ul>
<div id="slides-and-links" class="section level4">
<h4>Slides and links</h4>
<p>2015 Slides available on <a href="https://speakerdeck.com/jennybc/ubc-stat545-2015-cm001-intro-to-course">speakerdeck</a></p>
<script async class="speakerdeck-embed" data-id="cd35a9b58cb4403b8dec33d30766b41e" data-ratio="1.33333333333333" src="//speakerdeck.com/assets/embed.js"></script>
<div style="margin-bottom:5px">
<strong> <a href="https://speakerdeck.com/jennybc/ubc-stat545-2015-cm001-intro-to-course" title="UBC STAT545 2015 cm001 Intro to course" target="_blank">UBC STAT545 2015 cm001 Intro to course</a> </strong> from <strong><a href="https://speakerdeck.com/jennybc" target="_blank">Jennifer Bryan</a></strong>
</div>
<p>Selected links from the slides</p>
<ul>
<li><a href="http://jakevdp.github.io/blog/2013/10/26/big-data-brain-drain/">The Big Data Brain Drain: Why Science is in Trouble</a></li>
<li><a href="http://drewconway.com/zia/2013/3/26/the-data-science-venn-diagram">The data science Venn diagram</a></li>
<li><a href="http://t.co/D931Og8mq3">Slides from Hadley Wickham’s talk in the Simply Statistics Unconference</a></li>
<li>2014-08-17 NYT article <a href="http://www.nytimes.com/2014/08/18/technology/for-big-data-scientists-hurdle-to-insights-is-janitor-work.html?partner=rss&amp;emc=rss&amp;smid=tw-nytimesscience&amp;_r=0">For Big-Data Scientists:, ‘Janitor Work’ Is Key Hurdle to Insights</a> by Steve Lohr</li>
<li><a href="http://mimno.infosci.cornell.edu/b/articles/carpentry/">Data carpentry</a> (response to NYT article re: janitor work)</li>
<li><a href="http://www.john-foreman.com/blog/the-forgotten-job-of-a-data-scientist-editing">The Forgotten Job of a Data Scientist: Editing</a></li>
<li><a href="http://simplystatistics.org/2014/05/22/10-things-statistics-taught-us-about-big-data-analysis/">10 things statistics taught us about big data analysis</a></li>
<li><a href="http://simplystatistics.org/2014/03/20/the-8020-rule-of-statistical-methods-development/">The 80/20 rule of statistical methods development</a></li>
<li><a href="http://www.chrisstucchio.com/blog/2013/hadoop_hatred.html">Don’t use Hadoop - your data isn’t that big</a></li>
<li><a href="http://qz.com/81661/most-data-isnt-big-and-businesses-are-wasting-money-pretending-it-is/">Most data isn’t “big,” and businesses are wasting money pretending it is</a></li>
<li><a href="https://www.facebook.com/dan.ariely/posts/904383595868">Big data is like teenage sex</a></li>
<li><a href="http://www.edwardtufte.com">Edward Tufte</a> book <a href="http://www.edwardtufte.com/tufte/books_textb">chapter 5 on the Challenger Disaster</a></li>
<li>“Let’s Practice What We Preach: Turning Tables into Graphs”. The American Statistician, Volume 56, Number 2, 1 May 2002, pp. 121-130(10) by Gelman A, Pasarica C, Dodhia. <a href="http://www.jstor.org/stable/3087382">via JSTOR</a></li>
<li><a href="https://www.youtube.com/watch?v=N2zK3sAtr-4&amp;feature=youtu.be">Data Sharing and Management Snafu in 3 Short Acts</a>, a video</li>
<li><a href="http://www.r-project.org">The R Project</a></li>
<li><a href="http://www.rstudio.com/products/rstudio/">RStudio IDE</a></li>
<li><a href="http://rmarkdown.rstudio.com">R Markdown</a></li>
<li><a href="http://yihui.name/knitr/">knitr</a></li>
<li><a href="http://www.phdcomics.com/comics/archive.php?comicid=1531">“FINAL”.doc</a> from PHDCOMICS</li>
<li><a href="http://git-scm.com">Git</a></li>
<li><a href="https://github.com">GitHub</a></li>
<li><a href="http://www.wired.com/design/2013/08/how-segregated-is-your-city-this-eye-opening-map-shows-you/?viewall=true">The Best Map Ever Made of America’s Racial Segregation</a>
<ul>
<li><a href="http://www.coopercenter.org/demographics/Racial-Dot-Map">The Racial Dot Map</a></li>
<li><a href="https://github.com/unorthodox123/RacialDotMap">unorthodox123/RacialDotMap</a> on GitHub</li>
</ul></li>
<li><a href="http://blog.revolutionanalytics.com/2013/08/foodborne-chicago.html">Foodborne Chicago finds dodgy restaurants with tweets, and R</a>
<ul>
<li><a href="https://github.com/corynissen/foodborne_classifier">corynissen/foodborne_classifier</a> on GitHub</li>
</ul></li>
<li><a href="http://www.biostat.jhsph.edu/~rpeng/">Roger Peng</a></li>
<li><a href="http://zmjones.com/make/">GNU Make for Reproducible Data Analysis</a></li>
<li><a href="http://stackoverflow.com">stackoverflow</a></li>
</ul>
</div>
<div id="register-a-github-account" class="section level4">
<h4>Register a GitHub account</h4>
<p><strong>Do this first!</strong></p>
<ul>
<li>Register for a free individual GitHub account and request <a href="https://education.github.com/pack">the Student Developer Pack</a>. This will give you unlimited private repositories, among other goodies. Do this ASAP! I think a human vets these requests, so don’t delay making this request.
<ul>
<li>As with Twitter (see below), think before you set up your public profile. I suggest you use a real name and begin to build a scholarly identity in social media and coding, but it’s a decision you should make with intention.</li>
</ul></li>
<li>We will elicit your GitHub username soon so we can add you to the <a href="https://github.com/STAT545-UBC/">STAT 545 GitHub Organization</a>.
<ul>
<li>We will give you any private repositories you need for this class. So you just need the free individual account, i.e. we don’t have to wait for your Student Developer Pack to get approved.</li>
</ul></li>
</ul>
</div>
<div id="r-and-rstudio" class="section level4">
<h4>R and RStudio</h4>
<p>Follow <a href="block000_r-rstudio-install.html">these instructions</a>. Eventually we will want you to connect RStudio and Git(Hub) (see next item about installing Git), so if things are going really well, give that a try.</p>
<p>If you have a pre-existing installation of R and/or RStudio, we <strong>highly recommend</strong> that you reinstall and upgrade to the most recent version. It is very easy and RStudio, specifically, is changing rapidly and positively (written 2016-09). If you upgrade R, you will need to also update any packages you have installed.</p>
</div>
<div id="github-and-git-client" class="section level4">
<h4>Git(Hub) and Git client</h4>
<ul>
<li><strong>You can wait a couple days to do this if all the rest is overwhelming.</strong> But at least read the pages I link to here and start to prepare your mind.</li>
<li><a href="git00_index.html">Working with RStudio, Git, GitHub</a></li>
</ul>
</div>
<div id="twitter" class="section level4">
<h4>Twitter</h4>
<p><a href="https://twitter.com" class="uri">https://twitter.com</a></p>
<p>I will use the <a href="https://twitter.com/STAT545">@STAT545</a> Twitter account to make micro-announcements, share interesting links, and facilitate a conversation amongst ourselves <strong>in public</strong>.</p>
<p>In class, we talk about Twitter, its scholarly use, and privacy. Some relevant links:</p>
<ul>
<li><a href="http://chronicle.com/blogs/profhacker/disposable-twitter-accounts-for-classroom-use/40145">Disposable Twitter Accounts for Classroom Use</a> from ProfHacker on the Chronicle of Higher Education
<ul>
<li>Good quote: “I strongly encourage you to create a disposable account if for any reason you prefer not to share your personal account for classroom activities.”</li>
</ul></li>
<li><a href="http://catherinecronin.wordpress.com/2012/02/29/525/">Resources for exploring digital identity, privacy and authenticity</a> from Catherine Cronin</li>
<li><a href="http://ivory.idyll.org/blog/advice-to-graduate-students.html">Some advice to young graduate students</a> from C. Titus Brown</li>
<li><a href="http://blog.impactstory.org/how-to-be-the-grad-student-your-advisor-brags-about/">How to be the grad student your advisor brags about</a> from the blog of Impactstory</li>
<li><a href="http://chronicle.com/article/10-Commandments-of-Twitter-for/131813/">10 Commandments of Twitter for Academics</a> from Do Your Job Better on the Chronicle of Higher Education</li>
<li><a href="http://blogs.lse.ac.uk/impactofsocialsciences/files/2011/11/Published-Twitter_Guide_Sept_2011.pdf">Using Twitter in university research, teaching and impact activities: A guide for academics and researchers</a> <em>note: links to a PDF</em></li>
</ul>
<p>If you choose not to get a Twitter account, you will want to visit the <a href="https://twitter.com/STAT545">@STAT545 profile page</a> regularly to see what’s up.</p>
<p>If you set up (or already have a Twitter account), you should follow <a href="https://twitter.com/STAT545">@STAT545</a>. We will elicit your Twitter handle soon so we can follow you back.</p>
<p>You could also follow me as an individual, at <a href="https://twitter.com/JennyBryan">@JennyBryan</a>. Ditto for the course TAs. You can learn some good people to follow re: data science and R by looking at who we follow and who we have Twitter conversations with.</p>
</div>
<div id="rpubs" class="section level4">
<h4>RPubs</h4>
<p><a href="http://rpubs.com" class="uri">http://rpubs.com</a></p>
<p>This is a free hosting service provided by RStudio. It is the fastest way to get a report up on the web, based on an R script or an R Markdown file. But I think its days are numbered. Still, we may use this a little before we move on to other techniques. Registering for a free account is a “nice to do”, not a “must do”.</p>
</div>
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