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SV submission in breakend format are incorrectly penalised for correctly reporting INV events #6

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d-cameron opened this issue Nov 17, 2015 · 0 comments

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@d-cameron
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Since inversion events involve 2 breakpoints, submissions in VCF breakend format write 4 breakend records. The evaluation script incorrectly flags the second breakpoint call as a false positive, even when the breakend orientations are in the opposite directions to the first breakpoint.

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