SalishSea.yaml

# salishsea command processor run description example
#
# Salish Sea full domain with:
#   Smoothed JdF mouth bathymetry
#   S4-1 uniform initial T and S, depth corrected
#   Open, unstructured western boundary across Strait of Juan de Fuca
#     Tidal forcing at mouth of JdF
#     Masson, depth corrected, open boundaries
#   Open, unstructured northern boundary across Johnstone Strait
#     Tidal forcing just north of Port Nelson
#     Seasonal T and S forcing based on Thomson (1982)
#  All River Monthly run-off forcing
#  Atmospheric forcing with CGRF products
#    Constrained to no solid precipitation

config_name: SalishSea2D

# For runs on systems that use qsub/PBS/TORQUE; e.g. Westgrid
run_id: example
walltime: 10:00:00

paths:
  # If relative, paths are taken from current directory
  NEMO-code: ../../NEMO-code-2D/
  forcing: ../../NEMO-forcing/
  runs directory: ../../SalishSea/

grid:
  # If relative, paths are taken from forcing path above
  coordinates: coordinates_seagrid_SalishSea.nc
  bathymetry: /data/nsoontie/MEOPAR/2Ddomain/bathy2D.nc

forcing:
  # If relative, paths are taken from forcing path above
  atmospheric: /ocean/dlatorne/MEOPAR/CGRF/NEMO-atmos/
  # The path and name of a restart file may be used as initial conditions
  initial conditions: /data/nsoontie/MEOPAR/2Ddomain/
  open boundaries: open_boundaries/
  rivers: rivers/

namelists:
  # If relative, paths are taken from current directory
  - namelist.time
  - namelist.domain
  - namelist.surface.river
  - namelist.lateral
  - namelist.bottom
  - namelist.tracers
  - namelist.dynamics
  - namelist.compute.8core