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report.txt
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2024-05-12 10:58:56,957 - numexpr.utils - INFO - Note: NumExpr detected 64 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8.
2024-05-12 10:58:56,957 - numexpr.utils - INFO - NumExpr defaulting to 8 threads.
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:148: FutureWarning: The 'extension' entity currently excludes the leading dot ('.'). As of version 0.14.0, it will include the leading dot. To suppress this warning and include the leading dot, use `bids.config.set_option('extension_initial_dot', True)`.
warnings.warn("The 'extension' entity currently excludes the leading dot ('.'). "
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3112000
Range : 0 ... 3111999 = 0.000 ... 622.400 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Not setting metadata
622 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
Dropped 0/622 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-622.400-PCA-01 (exp var=81.1%)
Adding projection: eeg-Raw-0.000-622.400-PCA-02 (exp var=6.4%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 581 (average pulse 56 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
581 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 581 events and 151 original time points ...
0 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=49.7%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=28.9%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-01/ses-01/eeg/sub-01_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3234600
Range : 0 ... 3234599 = 0.000 ... 646.920 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Not setting metadata
646 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
Dropped 0/646 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-646.920-PCA-01 (exp var=74.6%)
Adding projection: eeg-Raw-0.000-646.920-PCA-02 (exp var=14.8%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 470 (average pulse 43 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
470 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 470 events and 151 original time points ...
0 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=83.6%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=7.5%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-02/ses-01/eeg/sub-02_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3418800
Range : 0 ... 3418799 = 0.000 ... 683.760 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Not setting metadata
683 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
[Parallel(n_jobs=1)]: Done 647 tasks | elapsed: 0.1s
Dropped 0/683 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-683.760-PCA-01 (exp var=54.9%)
Adding projection: eeg-Raw-0.000-683.760-PCA-02 (exp var=31.4%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 818 (average pulse 71 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.1s
Not setting metadata
818 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 818 events and 151 original time points ...
0 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=87.5%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=7.1%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-03/ses-01/eeg/sub-03_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3465600
Range : 0 ... 3465599 = 0.000 ... 693.120 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.1s
Not setting metadata
693 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
[Parallel(n_jobs=1)]: Done 647 tasks | elapsed: 0.1s
Dropped 0/693 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-693.120-PCA-01 (exp var=69.7%)
Adding projection: eeg-Raw-0.000-693.120-PCA-02 (exp var=19.1%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 677 (average pulse 58 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.1s
Not setting metadata
677 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 677 events and 151 original time points ...
1 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=93.5%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=3.6%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-04/ses-01/eeg/sub-04_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3480100
Range : 0 ... 3480099 = 0.000 ... 696.020 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Not setting metadata
696 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
[Parallel(n_jobs=1)]: Done 647 tasks | elapsed: 0.1s
Dropped 0/696 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-696.020-PCA-01 (exp var=69.6%)
Adding projection: eeg-Raw-0.000-696.020-PCA-02 (exp var=19.5%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 744 (average pulse 64 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.1s
Not setting metadata
744 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 744 events and 151 original time points ...
1 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=89.5%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=3.7%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-04/ses-02/eeg/sub-04_ses-02_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3238300
Range : 0 ... 3238299 = 0.000 ... 647.660 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.0s
Not setting metadata
647 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
[Parallel(n_jobs=1)]: Done 647 tasks | elapsed: 0.1s
[Parallel(n_jobs=1)]: Done 647 tasks | elapsed: 0.1s
Dropped 0/647 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-647.660-PCA-01 (exp var=55.0%)
Adding projection: eeg-Raw-0.000-647.660-PCA-02 (exp var=26.4%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 626 (average pulse 57 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
626 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 626 events and 151 original time points ...
1 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=93.0%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=2.9%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-05/ses-01/eeg/sub-05_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3227700
Range : 0 ... 3227699 = 0.000 ... 645.540 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Not setting metadata
645 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
Dropped 0/645 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-645.540-PCA-01 (exp var=63.5%)
Adding projection: eeg-Raw-0.000-645.540-PCA-02 (exp var=18.2%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 712 (average pulse 66 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
712 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 712 events and 151 original time points ...
1 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=71.0%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=21.7%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-05/ses-02/eeg/sub-05_ses-02_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3134100
Range : 0 ... 3134099 = 0.000 ... 626.820 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Not setting metadata
626 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
Dropped 0/626 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-626.820-PCA-01 (exp var=76.9%)
Adding projection: eeg-Raw-0.000-626.820-PCA-02 (exp var=11.3%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 569 (average pulse 54 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
569 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 569 events and 151 original time points ...
0 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=78.5%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=11.2%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-06/ses-01/eeg/sub-06_ses-01_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=3216500
Range : 0 ... 3216499 = 0.000 ... 643.300 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.9s
Not setting metadata
643 matching events found
No baseline correction applied
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 71 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 161 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 287 tasks | elapsed: 0.0s
[Parallel(n_jobs=1)]: Done 449 tasks | elapsed: 0.1s
Dropped 0/643 epochs
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg-Raw-0.000-643.300-PCA-01 (exp var=79.3%)
Adding projection: eeg-Raw-0.000-643.300-PCA-02 (exp var=7.6%)
2 projection items deactivated
Created an SSP operator (subspace dimension = 2)
2 projection items activated
SSP projectors applied...
Including 2 SSP projectors from raw file
Running ECG SSP computation
Using channel ECG to identify heart beats.
Setting up band-pass filter from 5 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hann window
- Lower passband edge: 5.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 4.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
Number of ECG events detected : 566 (average pulse 52 / min.)
Computing projector
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 35 Hz
FIR filter parameters
---------------------
Designing a two-pass forward and reverse, zero-phase, non-causal bandpass filter:
- Windowed frequency-domain design (firwin2) method
- Hamming window
- Lower passband edge: 1.00
- Lower transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 0.75 Hz)
- Upper passband edge: 35.00 Hz
- Upper transition bandwidth: 0.50 Hz (-12 dB cutoff frequency: 35.25 Hz)
- Filter length: 2500 samples (10.000 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 0.0s
Not setting metadata
566 matching events found
No baseline correction applied
Created an SSP operator (subspace dimension = 2)
2 projection items activated
Using data from preloaded Raw for 566 events and 151 original time points ...
0 bad epochs dropped
No channels 'grad' found. Skipping.
No channels 'mag' found. Skipping.
Adding projection: eeg--0.200-0.400-PCA-01 (exp var=81.1%)
Adding projection: eeg--0.200-0.400-PCA-02 (exp var=14.0%)
Done.
4 projection items deactivated
Overwriting existing file.
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.fif
[done]
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.json
Writing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.fif
Closing /projects/EEG_FMRI/bids_eeg/BIDS/NEW/DERIVATIVES/GRAD_BCG_ASR/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.fif
[done]
/home/slouviot/miniconda3/envs/mne/lib/python3.12/site-packages/bids/layout/models.py:222: UserWarning: Accessing entities as attributes is deprecated as of 0.7. Please use the .entities dictionary instead (i.e., .entities['task'] instead of .task.
warnings.warn("Accessing entities as attributes is deprecated as "
/projects/EEG_FMRI/bids_eeg/BIDS/NEW/RAW/sub-06/ses-02/eeg/sub-06_ses-02_task-rest_run-01_eeg.json
Filtering raw data in 1 contiguous segment
Setting up high-pass filter at 1 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal highpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.4s
Used Annotations descriptions: ['R128']
Creating RawArray with float64 data, n_channels=64, n_times=4724500
Range : 0 ... 4724499 = 0.000 ... 944.900 secs
Ready.
Filtering raw data in 1 contiguous segment
Setting up band-pass filter from 1 - 50 Hz
FIR filter parameters
---------------------
Designing a one-pass, zero-phase, non-causal bandpass filter:
- Windowed time-domain design (firwin) method
- Hamming window with 0.0194 passband ripple and 53 dB stopband attenuation
- Lower passband edge: 1.00
- Lower transition bandwidth: 1.00 Hz (-6 dB cutoff frequency: 0.50 Hz)
- Upper passband edge: 50.00 Hz
- Upper transition bandwidth: 12.50 Hz (-6 dB cutoff frequency: 56.25 Hz)
- Filter length: 16501 samples (3.300 s)
[Parallel(n_jobs=1)]: Done 17 tasks | elapsed: 1.7s
Not setting metadata
944 matching events found
No baseline correction applied