Plot ROC & PRC curves #321
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Adapted from https://github.com/SchlossLab/2021-08-09_ROCcurves Co-authored-by: Courtney Armour <courtneyarmour@users.noreply.github.com>
the curves appear to be flipped...
previously the predictions weren't getting arranged in descending order
Also improve the docs
- use pkg::fcn() syntax - declare data variables with null to silence warning about global vars - fixed examples
Codecov ReportBase: 98.01% // Head: 98.18% // Increases project coverage by
Additional details and impacted files@@ Coverage Diff @@
## main #321 +/- ##
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+ Coverage 98.01% 98.18% +0.17%
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Files 13 13
Lines 1007 1103 +96
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+ Hits 987 1083 +96
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Tried to include results list & mtx as package data, but it's too big for CRAN. Using them as test fixtures works when using system.file() to access them in the vignette.
…into iss-262_roc
…into iss-262_roc
works from the CLI!
…into iss-262_roc
courtneyarmour
approved these changes
Jan 13, 2023
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This code heavily borrows from @courtneyarmour's code club on ROC curves, so I made her a co-author on the initial commit 8982fb7.
Issues
Change(s) made
calc_model_sensspec()- calculate sensitivity, specificity, precision for a modelcalc_mean_roc()&plot_mean_roc()- calculate & plot specificity and mean sensitivity for multiple modelscalc_mean_prc()&plot_mean_prc()- calculate & plot recall and mean precision for multiple modelscalc_mean_perf()- used by calc_mean_roc() and calc_mean_prc()shared_ggprotos()- used by plot_mean_roc() and plot_mean_prc()vignette('parallel')to show how to plot ROC and PRC curves.Checklist
(
Strikethroughany points that are not applicable.)NEWS.mdif this includes any user-facing changes.