Precompilation error with 1.6 upgrade

[cjwyett]

I've wiped my .julia ( or $JULIA_DEPOT_PATH) and reinstalled Julia multiple times. The problem persists.

]add DifferentialEquations ends with:

Precompiling project...
  Progress [========================================>]  112/112
  ✗ Sundials
  ✗ DifferentialEquations
110 dependencies successfully precompiled in 83 seconds
2 dependencies errored

using DifferentialEquations gives me:

[ Info: Precompiling DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa]
ERROR: LoadError: InitError: could not load library "/home/cyrus/Julia/depot/artifacts/9188a0e465a5f00b41a8656ee0e5389ff2f4fa45/lib/libsundials_sunlinsollapackband.so"
libopenblas64_.so: cannot open shared object file: No such file or directory
Stacktrace:
 [1] __init__()
   @ Sundials_jll ~/Julia/depot/packages/Sundials_jll/heTyl/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:429
 [2] top-level scope (repeats 2 times)
   @ none:1
during initialization of module Sundials_jll
in expression starting at /home/cyrus/Julia/depot/packages/Sundials/1nn1O/src/Sundials.jl:3
ERROR: LoadError: Failed to precompile Sundials [c3572dad-4567-51f8-b174-8c6c989267f4] to /home/cyrus/Julia/depot/compiled/v1.6/Sundials/jl_Krswaz.
Stacktrace:
 [1] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
   @ Base ./loading.jl:1360
 [2] top-level scope (repeats 2 times)
   @ none:1
in expression starting at /home/cyrus/Julia/depot/packages/DifferentialEquations/HSWeG/src/DifferentialEquations.jl:1
ERROR: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to /home/cyrus/Julia/depot/compiled/v1.6/DifferentialEquations/jl_ww8s7Y.
Stacktrace:
 [1] compilecache(pkg::Base.PkgId, path::String, internal_stderr::Base.TTY, internal_stdout::Base.TTY)
   @ Base ./loading.jl:1360

]st output:

Status `~/Julia/projects/reaction_diffusion/Project.toml`
  [0c46a032] DifferentialEquations v6.16.0 

[ViralBShah]

Can you wipe the .julia and try with official binaries? I am not sure why this is trying to pick up libopenblas64_.so from artifacts and not the one that ships with Julia.

[cjwyett]

yep, official binaries work cleanly. Maybe something wrong with pacman julia?

[ViralBShah]

Not sure who maintains it - but this is why official binaries are recommended. It would be worth getting to the bottom of this.

@musm @DilumAluthge Would either of you know?

[DilumAluthge]

libopenblas64_.so: cannot open shared object file: No such file or directory

Maybe it's an issue with LBT?

[ViralBShah]

1.6 does not use LBT. Even when 1.6.1 updates to openblas 0.3.13, we will not pull in LBT.

[DilumAluthge]

Hmmm.

[DilumAluthge]

If it works for the official binaries but doesn't work for pacman Julia, we'll probably need to look at the script used to build pacman Julia.