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network free solvers #415

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isaacsas opened this issue Apr 8, 2024 · 0 comments
Open

network free solvers #415

isaacsas opened this issue Apr 8, 2024 · 0 comments

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@isaacsas
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isaacsas commented Apr 8, 2024

@TorkelE pointed out that on a multisite phosphorylation benchmark where species can have many phosphorylation states, we are starting to lose performance relative to network-free methods as the number of sites increases (NF methods track individual molecules and their states). It would be worth thinking about how to include such solvers / representations here too, especially in ways that can exploit our current SSA infrastructure.

@TorkelE when you are able to share, could you link the network files and sources?

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