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Dataset 7. cal3tree.calibrated.txt
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Dataset 7. cal3tree.calibrated.txt
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#NEXUS
[R-package APE, Wed Mar 17 15:43:25 2021]
BEGIN TAXA;
DIMENSIONS NTAX = 143;
TAXLABELS
Proganochelys_quenstedii
Australochelys_africanus
Kayentachelys_aprix
Eileanchelys_waldmanni
Naomichelys_speciosa
Uluops_uluops
Eubaena_cephalica
Arundelemys_dardeni
Kallokibotion_bajazidi
Meiolania_platyceps
Annemys_sp
Xinjiangchelys_radiplicatoides
Ordosemys_sp
Sandownia_harrisi
Solnhofia_parsonsi
Plesiochelys_etalloni
Plesiochelys_bigleri
Plesiochelys_planiceps
Portlandemys_mcdowelli
Jurassichelon_oleronensis
Rhinoclemmys_pulcherrima
Rhinoclemmys_melanosterna
Mauremys_leprosa
Cuora_flavomarginata
Cuora_amboinensis
Cuora_mouhotii
Cyclemys_dentata
Heosemys_annandalii
Notochelys_platynota
Sacalia_quadriocellata
Malayemys_subtrijuga
Orlitia_borneensis
Geoclemys_hamiltonii
Pangshura_tecta
Batagur_baska
Morenia_ocellata
Siebenrockiella_crassicollis
Geoemyda_spengleri
Indotestudo_forstenii
Indotestudo_elongata
Malacochersus_tornieri
Testudo_marginata
Testudo_horsfieldii
Kinixys_erosa
Chelonoidis_sp
Psammobates_tentorius
Homopus_areolatus
Aldabrachelys_gigantea
Stylemys_nebrascensis
Gopherus_flavomarginatus
Gopherus_agassizii
Manouria_impressa
Platysternon_megacephalum
Glyptemys_insculpta
Glyptemys_muhlenbergii
Emys_orbicularis
Emydoidea_blandingii
Terrapene_ornata
Terrapene_coahuila
Terrapene_carolina
Clemmys_guttata
Deirochelys_reticularia
Trachemys_scripta
Graptemys_geographica
Graptemys_pseudogeographica
Malaclemys_terrapin
Chrysemys_picta
Pseudemys_floridiana
Pseudemys_concinna
Rhinochelys_pulchriceps
Desmatochelys_lowii
Bouliachelys_suteri
Nichollsemys_baieri
Dermochelys_coriacea
Allopleuron_hofmanni
Argillochelys_antiqua
Puppigerus_camperi
Eochelone_brabantica
Caretta_caretta
Lepidochelys_olivacea
Lepidochelys_kempii
Eretmochelys_imbricata
Chelonia_mydas
Natator_depressus
Chelydropsis_murchisoni
Macrochelys_temminckii
Chelydra_serpentina
Dermatemys_mawii
Staurotypus_salvinii
Claudius_angustatus
Sternotherus_minor
Sternotherus_odoratus
Kinosternon_subrubrum
Kinosternon_baurii
Kinosternon_scorpioides
Kinosternon_hirtipes
Adocus_lineolatus
Basilemys_gaffneyi
Carettochelys_insculpta
Allaeochelys_libyca
Petrochelys_kyrgyzensis
Trionyx_triunguis
Chitra_chitra
Axestemys_infernalis
Apalone_mutica
Apalone_spinifera
Amyda_cartilaginea
Pelodiscus_sinensis
Cycloderma_frenatum
Cyclanorbis_senegalensis
Lissemys_punctata
Hydromedusa_tectifera
Phrynops_hilarii
Phrynops_geoffroanus
Platemys_platycephala
Chelus_fimbriatus
Chelodina_oblonga
Emydura_subglobosa
Elseya_dentata
Pelomedusa_subrufa
Pelusios_niger
Sahonachelys_mailakavava
Galianemys_emringeri
Galianemys_whitei
Araiochelys_hirayamai
Bothremys_maghrebiana
Bothremys_cooki
Labrostochelys_galkini
Taphrosphys_ippolitoi
Phosphatochelys_tedfordi
Ummulisani_rutgersensis
Hamadachelys_escuilliei
Yuraramirim_montealtensis
Lapparentemys_vilavilensis
Podocnemis_expansa
Podocnemis_unifilis
Podocnemis_erythrocephala
Peltocephalus_dumerilianus
Latentemys_plowdeni
Shweboemys_pilgrimi
Stereogenys_cromeri
Araripemys_barretoi
Dirqadim_schaefferi
;
END;
BEGIN TREES;
TRANSLATE
1 Proganochelys_quenstedii,
2 Australochelys_africanus,
3 Kayentachelys_aprix,
4 Eileanchelys_waldmanni,
5 Naomichelys_speciosa,
6 Uluops_uluops,
7 Eubaena_cephalica,
8 Arundelemys_dardeni,
9 Kallokibotion_bajazidi,
10 Meiolania_platyceps,
11 Annemys_sp,
12 Xinjiangchelys_radiplicatoides,
13 Ordosemys_sp,
14 Sandownia_harrisi,
15 Solnhofia_parsonsi,
16 Plesiochelys_etalloni,
17 Plesiochelys_bigleri,
18 Plesiochelys_planiceps,
19 Portlandemys_mcdowelli,
20 Jurassichelon_oleronensis,
21 Rhinoclemmys_pulcherrima,
22 Rhinoclemmys_melanosterna,
23 Mauremys_leprosa,
24 Cuora_flavomarginata,
25 Cuora_amboinensis,
26 Cuora_mouhotii,
27 Cyclemys_dentata,
28 Heosemys_annandalii,
29 Notochelys_platynota,
30 Sacalia_quadriocellata,
31 Malayemys_subtrijuga,
32 Orlitia_borneensis,
33 Geoclemys_hamiltonii,
34 Pangshura_tecta,
35 Batagur_baska,
36 Morenia_ocellata,
37 Siebenrockiella_crassicollis,
38 Geoemyda_spengleri,
39 Indotestudo_forstenii,
40 Indotestudo_elongata,
41 Malacochersus_tornieri,
42 Testudo_marginata,
43 Testudo_horsfieldii,
44 Kinixys_erosa,
45 Chelonoidis_sp,
46 Psammobates_tentorius,
47 Homopus_areolatus,
48 Aldabrachelys_gigantea,
49 Stylemys_nebrascensis,
50 Gopherus_flavomarginatus,
51 Gopherus_agassizii,
52 Manouria_impressa,
53 Platysternon_megacephalum,
54 Glyptemys_insculpta,
55 Glyptemys_muhlenbergii,
56 Emys_orbicularis,
57 Emydoidea_blandingii,
58 Terrapene_ornata,
59 Terrapene_coahuila,
60 Terrapene_carolina,
61 Clemmys_guttata,
62 Deirochelys_reticularia,
63 Trachemys_scripta,
64 Graptemys_geographica,
65 Graptemys_pseudogeographica,
66 Malaclemys_terrapin,
67 Chrysemys_picta,
68 Pseudemys_floridiana,
69 Pseudemys_concinna,
70 Rhinochelys_pulchriceps,
71 Desmatochelys_lowii,
72 Bouliachelys_suteri,
73 Nichollsemys_baieri,
74 Dermochelys_coriacea,
75 Allopleuron_hofmanni,
76 Argillochelys_antiqua,
77 Puppigerus_camperi,
78 Eochelone_brabantica,
79 Caretta_caretta,
80 Lepidochelys_olivacea,
81 Lepidochelys_kempii,
82 Eretmochelys_imbricata,
83 Chelonia_mydas,
84 Natator_depressus,
85 Chelydropsis_murchisoni,
86 Macrochelys_temminckii,
87 Chelydra_serpentina,
88 Dermatemys_mawii,
89 Staurotypus_salvinii,
90 Claudius_angustatus,
91 Sternotherus_minor,
92 Sternotherus_odoratus,
93 Kinosternon_subrubrum,
94 Kinosternon_baurii,
95 Kinosternon_scorpioides,
96 Kinosternon_hirtipes,
97 Adocus_lineolatus,
98 Basilemys_gaffneyi,
99 Carettochelys_insculpta,
100 Allaeochelys_libyca,
101 Petrochelys_kyrgyzensis,
102 Trionyx_triunguis,
103 Chitra_chitra,
104 Axestemys_infernalis,
105 Apalone_mutica,
106 Apalone_spinifera,
107 Amyda_cartilaginea,
108 Pelodiscus_sinensis,
109 Cycloderma_frenatum,
110 Cyclanorbis_senegalensis,
111 Lissemys_punctata,
112 Hydromedusa_tectifera,
113 Phrynops_hilarii,
114 Phrynops_geoffroanus,
115 Platemys_platycephala,
116 Chelus_fimbriatus,
117 Chelodina_oblonga,
118 Emydura_subglobosa,
119 Elseya_dentata,
120 Pelomedusa_subrufa,
121 Pelusios_niger,
122 Sahonachelys_mailakavava,
123 Galianemys_emringeri,
124 Galianemys_whitei,
125 Araiochelys_hirayamai,
126 Bothremys_maghrebiana,
127 Bothremys_cooki,
128 Labrostochelys_galkini,
129 Taphrosphys_ippolitoi,
130 Phosphatochelys_tedfordi,
131 Ummulisani_rutgersensis,
132 Hamadachelys_escuilliei,
133 Yuraramirim_montealtensis,
134 Lapparentemys_vilavilensis,
135 Podocnemis_expansa,
136 Podocnemis_unifilis,
137 Podocnemis_erythrocephala,
138 Peltocephalus_dumerilianus,
139 Latentemys_plowdeni,
140 Shweboemys_pilgrimi,
141 Stereogenys_cromeri,
142 Araripemys_barretoi,
143 Dirqadim_schaefferi
;
TREE * UNTITLED = [&R] (1:15.8,(2:7.064847712,(3:3.925082789,(4:21.41597308,((5:32.89576798,(6:0.4918076557,(7:62.03441581,8:15.13245364):20.5):1.6):18,((9:4.024409705,10:74.92367775):92.3,((11:3.773467324,12:10.93162284):1.6,(13:20.27751636,(((14:29.13817574,15:0.8361605683):1.2,((16:4.516771223,17:0.2580914268):0.1,(18:0.5689869977,(19:0.4432194544,20:1.190666445):0.4):2.7):0):0,(((((((21:33.20470059,22:33.20470059):34.5,(((23:41.20470059,(24:21.00470059,(25:20.10470059,26:20.10470059):0.9):20.2):3.7,((27:39.90470059,(28:35.90470059,29:35.90470059):4):4.3,30:44.20470059):0.7):19,(((31:35.40470059,32:35.40470059):15.6,(33:48.40470059,((34:34.90470059,35:34.90470059):5.9,36:40.80470059):7.6):2.6):8.6,(37:51.70470059,38:51.70470059):7.9):4.3):3.8):14.5,(((((39:26.90470059,40:26.90470059):18,41:44.90470059):5.2,(42:37.30470059,43:37.30470059):12.8):13.1,((44:43.60470059,45:43.60470059):4,((46:43.80470059,47:43.80470059):1.4,48:45.20470059):2.4):15.6):6.5,((49:14.40250704,(50:29.10470059,51:29.10470059):17.7):10.8,52:57.60470059):12.1):12.5):24.4,(53:94.30470059,(((54:31.30470059,55:31.30470059):7.8,((56:17.60470059,57:17.60470059):10.6,((58:14.50470059,(59:13.50470059,60:13.50470059):1):9.1,61:23.60470059):4.6):10.9):9.4,(62:33.90470059,((63:31.60470059,((64:8.904700589,65:8.904700589):5.4,66:14.30470059):17.3):0.4,(67:21.30470059,(68:3.704700589,69:3.704700589):17.6):10.7):1.9):14.6):45.8):12.3):7.8,(((70:6.418155291,(71:13.06920212,72:0.1927859429):0.2):0,(73:0.6007966761,((74:70.90470059,75:0.6613083331):0,((76:1.421309696,(77:0.4050428939,78:6.965885002):0):1.2,(((79:16.30470059,(80:6.704700589,81:6.704700589):9.6):8.4,82:24.70470059):8.7,(83:22.80470059,84:22.80470059):10.6):17.7):19.8):4):31.9):3.8,((85:16.37855277,(86:26.70470059,87:26.70470059):2):80.3,(88:87.10470059,((89:31.30470059,90:31.30470059):24.2,((91:33.10470059,92:33.10470059):1.7,((93:26.30470059,94:26.30470059):1.5,(95:14.40470059,96:14.40470059):13.4):7):20.7):31.6):21.9):1.6):3.8):2.4,((97:9.51010266,98:2.043407112):29.4,((99:28.10470059,100:12.61943263):78.1,(101:0.9643562699,(((102:73.60470059,103:73.60470059):3.9,((104:2.042549955,(105:34.90470059,106:34.90470059):35.4):0.3,(107:58.60470059,108:58.60470059):12):6.9):26.8,((109:54.20470059,110:54.20470059):1,111:55.20470059):49.1):1.4):0.5):0.6):10):29,(((112:111.5047006,((113:58.90470059,(114:56.40470059,115:56.40470059):2.5):24.1,116:83.00470059):28.5):16.1,(117:107.1047006,(118:47.80470059,119:47.80470059):59.3):20.5):17.8,(((120:63.80470059,121:63.80470059):81.5,(122:68.77092642,(((123:7.651727247,124:13.90636366):11.7,((125:39.48640913,(126:20.08807769,127:15.96306747):18.9):5.3,(128:7.177175961,(129:3.535287548,(130:11.42728684,131:7.669922243):3.5):5.5):34.7):13.1):0,(132:23.68334135,((133:0.5414914314,134:13.23205441):34.9,((135:55.70470059,(136:51.10470059,137:51.10470059):4.6):50.8,(138:56.80470059,(139:23.69732736,(140:30.46807427,141:9.285041569):10.8):10.4):49.7):6.7):4.4):2.1):16.9):8.7):0,(142:31.51171669,143:45.12656589):5.8):0.1):0.4):7.8):2.7):10.5):0.5):3.8):16.6):12.2):8.5):12.9);
END;