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ImportError: No module named recyclelib.utils #27

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gamer3051 opened this issue Apr 18, 2018 · 1 comment
Open

ImportError: No module named recyclelib.utils #27

gamer3051 opened this issue Apr 18, 2018 · 1 comment

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@gamer3051
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I recently had to reinstall pysam (using conda) and now Recycler is not working for some reason... Here is what I am trying to run in the terminal:
Recycler/bin/recycle.py -g Downloads/SPAdes/ThesisRecycler/assembly_graph.fastg -k 77 -b Downloads/SPAdes/ThesisRecycler/reads_pe_primary.sort.bam

This is the error I am getting:
Traceback (most recent call last):
File "Recycler/bin/recycle.py", line 4, in
from recyclelib.utils import *
ImportError: No module named recyclelib.utils

I am running MacOSX. I am very new to Python/programming, any help would be appreciated.

@dpellow
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dpellow commented Apr 22, 2018

Hi @gamer3051 - what version of Recycler are you using? Can you try to reinstall the module?

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