/
allreducer.py
1678 lines (1420 loc) · 84.6 KB
/
allreducer.py
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# -*- coding: utf-8 -*-
from __future__ import print_function
import numpy as np
import time
import torch
import logging
import utils
import settings
from mpi4py import MPI
from settings import logger
import sys
import math
class MESSAGE:
STOP = 'STOP'
RUNNING = 'RUNNING'
mpi_float16 = MPI.BYTE.Create_contiguous(2).Commit()
MPI._typedict['e'] = mpi_float16
MPI_TYPES = {
np.float32: MPI.FLOAT,
np.float16: mpi_float16
}
THRESHOLD = 640*1024*1024
# right rotate for a positive n
# left rotate for a negative n
def list_rotate(l, n):
return l[-n:] + l[:-n]
def topk_sparse_allreduce(comm, sparse_tensor, storage, indexes=None, dtype=np.float32):
tensor = sparse_tensor
if indexes is None:
k = int(tensor.size * 0.01)
indexes, values = utils.topk(tensor, k)
else:
if not (type(indexes) is np.ndarray):
indexes = indexes.cpu().numpy().astype(np.uint32)
k = len(indexes)
values = tensor#[indexes]
num_workers = comm.size
if storage is not None and 'values_1d' in storage:
values_1d = storage['values_1d']
indexes_1d = storage['indexes_1d']
result = storage['result']
else:
values_1d = np.zeros(k * num_workers, dtype=np.float32)
indexes_1d = np.zeros(k * num_workers, dtype=np.uint32)
result = np.zeros_like(tensor)
storage['values_1d'] = values_1d
storage['indexes_1d'] = indexes_1d
storage['result'] = result
if dtype != np.float32:
values_1d = values_1d.astype(dtype)
result.fill(0)
if len(indexes) == 0:
return result, None
nnz = k
comm.Allgather(values, values_1d[:num_workers*nnz])
comm.Allgather(indexes, indexes_1d[:num_workers*nnz])
return values_1d, indexes_1d, None #result, None
def topk(tensor, k):
indexes = np.abs(tensor).argsort()[-k:][::-1]
return indexes, tensor[indexes]
def gtopk_sparse_allreduce(comm, sparse_tensor, storage=None, indexes=None, dtype=np.float32):
"""
0: 0(0) <- 1(1), 2(2) <- 3(3), 4(4) <- 5(5), 6(6) <- 7(7)
1: 0(0) <- 2(1), 4(2) <- 6(3)
2: 0(0) <- 4(1)
0 -> 1
0 -> 2, 1 -> 3
0 -> 4, 1 -> 5, 2 -> 6, 3 -> 7
"""
num_workers = comm.size
rank = comm.rank
tensor = sparse_tensor
if indexes is None:
k = int(tensor.size * 0.001)
indexes, values = utils.topk(tensor, k)
else:
if not (type(indexes) is np.ndarray):
indexes = indexes.cpu().numpy()
k = len(indexes)
values = tensor
original_indexes = indexes
send_values = np.concatenate((indexes, values))
send_values[0:k] = indexes.astype(np.uint32)
send_values[k:2*k] = values.astype(np.float32)
if storage is not None and 'result_v2' in storage:
recv_values = storage['result_v2']
if recv_values.size < k*2:
recv_values = np.zeros_like(send_values)
if storage:
storage['result_v2'] = recv_values
recv_values = recv_values[0:k*2]
else:
recv_values = np.zeros_like(send_values)
if storage:
storage['result_v2'] = recv_values
num_round = int(np.log2(num_workers))
local_rank = rank
exist_workers = num_workers
step = 1
participate_ranks = range(0, num_workers, step)
for i in range(num_round):
if rank in participate_ranks:
local_rank = participate_ranks.index(rank)
if local_rank % 2 == 0:
source = participate_ranks[local_rank+1]
comm.Recv([recv_values, MPI.FLOAT], source=source)
#reqr = comm.Irecv([recv_values, MPI.FLOAT], source=source)
#reqr.Wait()
tmp_indexes = recv_values[0:k].astype(np.int32)
tmp_values = recv_values[k:2*k]
cv, c1, c2 = np.intersect1d(indexes, tmp_indexes, assume_unique=False, return_indices=True)
values[c1] += tmp_values[c2]
tmp_values[c2] = 0.0
tmp_c = np.concatenate((values, tmp_values))
tmp_topki, tmp_topkv = utils.topk(tmp_c, k)
first_array_indexes = tmp_topki[tmp_topki < k]
second_array_indexes = tmp_topki[tmp_topki >= k]-k
indexes = np.concatenate((indexes[first_array_indexes], tmp_indexes[second_array_indexes]))
values = np.concatenate((values[first_array_indexes], tmp_values[second_array_indexes]))
send_values = np.concatenate((indexes, values))
send_values[0:k] = indexes.astype(np.uint32)
send_values[k:2*k] = values.astype(np.float32)
else:
target = participate_ranks[local_rank-1]
logger.debug('[round:%d], %d(%d)->%d(%d)', i, rank, local_rank, target, local_rank-1)
comm.Send([send_values, MPI.FLOAT], dest=target)
#reqs = comm.Isend([send_values, MPI.FLOAT], dest=target)
#reqs.Wait()
exist_workers /= 2
step *= 2
participate_ranks = range(0, num_workers, step)
comm.Barrier()
if rank == 0:
send_values = np.concatenate((indexes, values))
indexes = indexes.astype(np.uint32)
values = values.astype(np.float32)
send_values[0:k] = indexes
send_values[k:2*k] = values
else:
send_values = recv_values[0:2*k]
comm.Bcast(send_values, root=0)
tensor.fill(0.)
if rank != 0:
tmp_indexes = send_values[0:k].astype(np.uint32)
tmp_values = send_values[k:2*k].astype(np.float32)
values = tmp_values
indexes = tmp_indexes
cv, c1, c2 = np.intersect1d(original_indexes, indexes, assume_unique=False, return_indices=True)
included_indexes = c1
return values, indexes, included_indexes # final selected values and indexes
def dense_allreduce(comm, tensor):
result = np.zeros_like(tensor)
op = MPI.SUM
comm.Allreduce(tensor, result, op)
comm.Barrier()
return result
def _default_err_callback(new_num_workers, new_rank):
logger.error('Some process error accurs, number of workers changes to %d, my rank changes to %d', new_num_workers, new_rank)
def force_insert_item(d, key, val):
if key not in d:
d[key] = []
d[key].append(val)
class AllReducer():
def __init__(self, named_parameters, lock, key_lock, compression, sparse=False, err_callback=None, layerwise_times=None, sigma_scale=2.5, density=0.001, train_epoch=0, norm_clip=None, msg_queue=None, msg_queue2=None, writer=None):
self._running = False
self._msg_queue = msg_queue
self._msg_queue2 = msg_queue2
self._writer = writer
self._profiling = True
self._entries = {}
self._keys = []
self._outputs = {}
self._residuals = {}
self._sparse_storages = {}
self._sparse_storages_topk = {}
self._sparse = sparse
self._sigma_scale = sigma_scale
self._density = density
self.train_epoch = train_epoch
self.train_iter = 0
self._scale = 1.012
self._scale_global_decrease = 1.008
self._scale_global_increase = 1.008
self._gaukvalue = []
self._norm_dict = {}
self._local_topk_dict = {}
self._global_topk_dict = {}
logger.info('density: %f', self._density)
logger.info('threshold scale: %f', self._scale)
self._comm = MPI.COMM_WORLD
self._comm.Set_errhandler(MPI.ERRORS_RETURN)
self._layerwise_times = layerwise_times # L->1: Note that the layerwise time is from the last layer to the first
_named_parameters = list(named_parameters)
#self._named_parameters = {k: v for k, v
# in _named_parameters}
#self._default_for_reductions = {k: 1 for k, v
# in _named_parameters}
#self._sequential_keys = [k for k, v in _named_parameters]
self._named_parameters = {k: v for k, v
in _named_parameters if v.requires_grad}
self._default_for_reductions = {k: 1 for k, v
in _named_parameters if v.requires_grad}
self._sequential_keys = [k for k, v in _named_parameters if v.requires_grad]
self._lock = lock
self._key_lock = key_lock
self._compression = compression
self._err_callback = err_callback if err_callback else _default_err_callback
self._norm_clip = norm_clip
self._allreduce_counter = {}
self._local_threshold = {}
self._global_threshold = {}
self._boundaries = {}
self._region_offsets = {}
dsts = list(range(self._comm.size))
srcs = dsts[::-1]
dsts = list_rotate(dsts, -self._comm.rank)
srcs = list_rotate(srcs, self._comm.rank+1)
self._dsts = dsts
self._srcs = srcs
self._generate_merged_parameters()
self.allocate_sparse_storages()
self._allreduce_timers = {}
self._compression_timers = {}
self._merge_timers = {}
self._demerge_timers = {}
self._h2d_times = {}
self._d2h_times = {}
self._profiling_norms = []
#self._dynamic_densities = [0.25, 0.16, 0.1, 0.05, 0.05, 0.05, 0.025]
self._dynamic_densities = [] # the tuned one
if self._dynamic_densities is not None:
self._dynamic_densities.append(self._density)
logger.info('dynamic densities = %s', self._dynamic_densities)
self.reset()
def _generate_groups_with_threshold(self, threshold):
sizes = [self._named_parameters[k].data.numel() for k in self._sequential_keys][::-1] # reverse order
self._sizes = sizes
print("total parameters: ", sum(sizes))
sub_size = 0
groups = []
group = []
key_groupidx_maps = {}
idx = 0
for k in self._sequential_keys[::-1]:
numel = self._named_parameters[k].data.numel()
sub_size += numel
key_groupidx_maps[k] = idx
if sub_size < threshold:
group.append(k)
else:
idx += 1
group.append(k)
groups.append(group)
group = []
sub_size = 0
if len(group) > 0:
groups.append(group)
return groups, key_groupidx_maps
def _generate_merged_parameters(self):
self._merged_parameters = {}
groups, key_groupidx_maps = self._generate_groups_with_threshold(THRESHOLD)
logger.info('groups: %s', groups)
logger.info('key_groupidx_maps: %s', key_groupidx_maps)
new_keys = []
self._merged_parameter_offsets = {}
for g in groups:
sub_size = 0
offsets = []
for k in g:
offsets.append(sub_size)
numel = self._named_parameters[k].data.numel()
sub_size += numel
new_key = ':'.join(g)
new_keys.append(new_key)
self._merged_parameters[new_key] = torch.zeros(sub_size, device=self._named_parameters[g[0]].device, dtype=self._named_parameters[g[0]].dtype, requires_grad=False)
self._merged_parameter_offsets[new_key] = offsets
self._allreduce_counter[new_key] = 0
self._local_threshold[new_key] = 0.0
self._global_threshold[new_key] = 0.0
self._boundaries[new_key] = self._comm.size * [0]
self._region_offsets[new_key] = self._comm.size * [0]
self._groups = groups
self._key_groupidx_maps = key_groupidx_maps
self._groups_flags = []
for g in self._groups:
flags = []
for k in g:
flags.append(0)
self._groups_flags.append(flags)
logger.info('offsets: ', self._merged_parameter_offsets)
def _push_to_buffer(self, name, tensor):
if len(self._groups) == len(self._sequential_keys):
return name, tensor
group_idx = self._key_groupidx_maps[name]
g = self._groups[group_idx]
new_key = ':'.join(g)
layer_idx = g.index(name)
offset = self._merged_parameter_offsets[new_key][layer_idx]
numel = tensor.data.numel()
self._merged_parameters[new_key].data[offset:offset+numel]= tensor.view(numel).data
self._groups_flags[group_idx][layer_idx] = 1
try:
idx = self._groups_flags[group_idx].index(0)
except:
idx = -1
if idx >= 0:
return name, None
return new_key, self._merged_parameters[new_key]
def _pull_from_buffer(self, name, merged_tensor):
if len(self._groups) == len(self._sequential_keys):
return {name: merged_tensor}
offsets = self._merged_parameter_offsets[name]
g = name.split(':')
group_idx = self._key_groupidx_maps[g[0]]
self._groups_flags[group_idx] = [0]*len(self._groups_flags[group_idx])
tensors = {}
for i, k in enumerate(g):
offset = offsets[i]
original_tensor = self._named_parameters[k]
numel = original_tensor.numel()
tensor = torch.zeros(numel, device=original_tensor.device, dtype=original_tensor.dtype)
tensor.data = merged_tensor.data[offset:offset+numel]
tensors[k] = tensor.view(original_tensor.shape)
return tensors
def rank(self):
return self._comm.rank
def size(self):
return self._comm.size
def allocate_sparse_storages(self):
for k, v in self._merged_parameters.items():
self.allocate_storage(k, v)
def _print_profiling(self):
if self._profiling and self.rank() == 0 and len(self._allreduce_timers.keys()) > 0 and len(self._allreduce_timers.get(list(self._allreduce_timers.keys())[0], [])) == 50:
cts = self._layerwise_times # gpu computation
mgs = self._merge_timers # merge_times
if len(self._compression_timers) != 0:
cps = self._compression_timers # compression
ars = self._allreduce_timers # allreduce times
dms = self._demerge_timers# demerge times
d2hs = self._d2h_times
h2ds = self._h2d_times
l = 0
logger.info('[rank:%d]name[size]: backward, merge, compression, allreduce, demerge, d2h, h2d')
total_sz = 0
total_ct = 0.0
total_mg = 0.0
total_cp = 0.0
total_ar = 0.0
total_dm = 0.0
total_d2h = 0.0
total_h2d = 0.0
for g in self._groups:
ct = 0.0
sz = 0
for k in g:
if cts is not None:
ct += cts[l]
else:
ct = 0.0
sz += self._sizes[l]
total_ct += ct
l += 1
total_sz += sz
k = ':'.join(g)
mg = np.mean(mgs[k])
total_mg += mg
if len(self._compression_timers) != 0:
cp = np.mean(cps[k])
total_cp += cp
ar = np.mean(ars[k])
total_ar += ar
dm = np.mean(dms[k])
total_dm += dm
d2h = np.mean(d2hs.get(k, [0.0]))
total_d2h += d2h
h2d = np.mean(h2ds.get(k, [0.]))
total_h2d += h2d
if len(self._compression_timers) != 0:
logger.info('[rank:%d]%s[%d]: %f,%f,%f,%f,%f,%f,%f', self.rank(), k[0:3]+'...'+k[-3:], sz, ct,mg,cp,ar,dm,d2h,h2d)
else:
logger.info('[rank:%d]%s[%d]: %f,%f,%f,%f,%f,%f', self.rank(), k[0:3]+'...'+k[-3:], sz, ct,mg,ar,dm,d2h,h2d)
mgs.pop(k, None)
if len(self._compression_timers) != 0:
cps.pop(k, None)
ars.pop(k, None)
dms.pop(k, None)
d2hs.pop(k, None)
h2ds.pop(k, None)
logger.info('[rank:%d]%s[%d]: %f,%f,%f,%f,%f,%f,%f', self.rank(), 'total', total_sz, total_ct,total_mg,total_cp,total_ar,total_dm,total_d2h,total_h2d)
def reset(self):
self._for_reductions = self._default_for_reductions.copy()
self._print_profiling()
def add_tensor(self, name, tensor):
if name in self._entries:
return
self._entries[name] = tensor
return name
def get_current_density(self):
density = self._density
if self._dynamic_densities is not None:
if self.train_epoch >= len(self._dynamic_densities):
density = self._dynamic_densities[-1]
else:
density = self._dynamic_densities[self.train_epoch]
return density
def get_approximate_sigma_scale(self, density):
sigma_scale = 1
if density > 0.7:
sigma_scale = 0.5
elif density <= 0.7 and density > 0.05:
sigma_scale = 1.5
elif density <= 0.05 and density > 0.01:
sigma_scale = 2.0
else:
sigma_scale = 3.0
return sigma_scale
def get_result(self, name):
return self._outputs[name]
def allocate_storage(self, name, tensor):
storage = {}
self._sparse_storages[name] = storage
self._sparse_storages_topk[name] = {}
def _sparse_allreduce(self, name, tensor, selected_tensor, original_shape, topk_indexes=None):
stime = time.time()
ct = selected_tensor
if ct.is_cuda: # only transfer the selected k values through PCI-e
entry = ct.data.cpu().numpy()
else:
entry = ct.data.numpy()
if self._profiling:
force_insert_item(self._d2h_times, name, time.time()-stime)
result = None
included_indexes = None
full_mean = None
full_var = None
if self._compression.name in ['topkA', 'topkA2']:
result, global_indexes, included_indexes = topk_sparse_allreduce(self._comm, entry, self._sparse_storages[name], indexes=topk_indexes, dtype=np.float32)
elif self._compression.name in ['gtopk']:
result, global_indexes, included_indexes = gtopk_sparse_allreduce(self._comm, entry, storage=self._sparse_storages[name], indexes=topk_indexes, dtype=np.float32)
r = torch.from_numpy(result)
gi = torch.from_numpy(global_indexes.astype(np.int64))
stime = time.time()
if tensor.is_cuda:
r = r.cuda(tensor.device, non_blocking=False)
final_indexes = gi.cuda(tensor.device, non_blocking=False)
else:
final_indexes = gi
tensor.fill_(0.0)
if self._compression.name in ['gtopk']:
tensor[final_indexes] = r
elif self._compression.name in ['topkA', 'topkA2']:
num_workers = self._comm.size
nnz = topk_indexes.size(0)
for i in range(num_workers):
index = final_indexes[i*nnz:(i+1)*nnz]
tensor[index] += r[i*nnz:(i+1)*nnz]
if self._compression.name == 'topkA2':
values, indexes = torch.topk(torch.abs(tensor.data), k=nnz)
cv, c1, c2 = np.intersect1d(indexes.cpu().numpy(), topk_indexes.cpu().numpy(), assume_unique=False, return_indices=True)
included_indexes = c2
values = tensor.data[indexes]
tensor.data.fill_(0.0)
tensor.data[indexes] = values.data
tensor /= self.size()
if self._profiling:
force_insert_item(self._h2d_times, name, time.time()-stime)
return tensor, included_indexes, full_mean
def _dense_allreduce(self, name, tensor):
ct = tensor
shape = tensor.shape
if ct.is_cuda:
entry = ct.data.cpu().numpy()
else:
entry = ct.data.numpy()
result = dense_allreduce(self._comm, entry)
result = result.reshape(shape)
r = torch.from_numpy(result)
if tensor.is_cuda:
r = r.cuda(tensor.device, non_blocking=False)
r /= self.size()
return r
def run(self):
self._running = True
logger.info('Allreducer thread started ...')
comm = self._comm
while self._running:
name = self._msg_queue.get()
if name == 'STOP':
break
if name is not None:
tensor = self._entries[name]
# push the tensor to the buffer
stime = time.time()
new_name, new_tensor = self._push_to_buffer(name, tensor)
if self._profiling:
force_insert_item(self._merge_timers, new_name, time.time()-stime)
if new_tensor is None:
continue
num_workers = comm.size
rank = comm.rank
stime = time.time()
if self._allreduce_counter[new_name] < 512: #
result = self._dense_allreduce(new_name, new_tensor)
elif self._sparse and self._compression.name == 'oktopk':
cstime = time.time()
local_threshold_recompute_interval = 32
global_threshold_recompute_interval = 32
region_repartition_interval = 64
#local_threshold_recompute_interval = 64
#global_threshold_recompute_interval = 64
#region_repartition_interval = 64
if settings.PROFILING_NORM:
dense_all_grads = self._dense_allreduce(new_name, new_tensor)
#grad_norm = new_tensor.norm(p=2).item()
grad_norm = dense_all_grads.norm(p=2).item()
density = self.get_current_density()
tensor_size = torch.numel(new_tensor.data)
topk_value = int(tensor_size * density)
if self._allreduce_counter[new_name] % local_threshold_recompute_interval == 0:
self._local_threshold[new_name] = self._compression.ratio2threshold(tensor=new_tensor, name=new_name, ratio=density)
else:
self._local_threshold[new_name] = self._compression.add2residual(tensor=new_tensor, name=new_name, thrd=self._local_threshold[new_name], tk=topk_value)
local_threshold = self._local_threshold[new_name]
if settings.PROFILING_NORM:
residuals = self._compression.get_residuals(new_name, new_tensor)
dense_result = self._dense_allreduce(new_name, residuals)
#grad_norm = dense_result.norm(p=2).item()
dense_values, dense_indexes = torch.topk(torch.abs(dense_result.data), k=topk_value)
global_topk_tensor = torch.zeros_like(residuals.data)
global_topk_tensor[dense_indexes] = dense_result[dense_indexes]
if settings.PROFILING_GRAD:
tensor_np = new_tensor.cpu().numpy()
ok_gk_thrds = np.zeros(2, dtype='float32')
gk_thrd, gk_topk = self._compression.predictratio2threshold(tensor=new_tensor, name=new_name, ratio=density)
ok_gk_thrds[0] = local_threshold
ok_gk_thrds[1] = gk_thrd
self._gaukvalue.append(gk_topk)
if rank == 0:
print("counter: ", self._allreduce_counter[new_name], "rank: ", rank, "ok_gk_local_thrds: ", ok_gk_thrds, "gk_localtopk_value: ", gk_topk)
if rank == 0 and ((self._allreduce_counter[new_name] >= 3991 and self._allreduce_counter[new_name] <= 3995) or (self._allreduce_counter[new_name] >= 12991 and self._allreduce_counter[new_name] <= 12995)):
np.save('vgglocalgrad'+str(self._allreduce_counter[new_name])+'_k'+str(topk_value)+'.npy', tensor_np)
np.save('vgglocalthrds'+str(self._allreduce_counter[new_name])+'_k'+str(topk_value)+'.npy', ok_gk_thrds)
if self._allreduce_counter[new_name] == 31300 and rank == 0:
gauktopk_np = np.asarray(self._gaukvalue, dtype='int32')
np.save('vgggauktopkvalues_'+str(num_workers)+'nodes_k'+str(topk_value)+'.npy', gauktopk_np)
np.savetxt('vgggauktopkvalues_'+str(num_workers)+'nodes_k'+str(topk_value)+'.txt', gauktopk_np)
# region repartition
if self._allreduce_counter[new_name] % region_repartition_interval == 0:
with torch.no_grad():
indexes = self._compression.compressbythresholdlong(tensor=new_tensor, thres=local_threshold)
indexes = indexes.type(torch.IntTensor)
local_topk_indexes = indexes.cpu().numpy()
index_chunk = local_topk_indexes.size // num_workers
index_boundaries = np.zeros(num_workers, dtype='int32')
for i in range(num_workers):
index_boundaries[i] = index_chunk * i
region_boundaries = local_topk_indexes[index_boundaries[1:]]
global_boundaries = np.zeros_like(region_boundaries)
comm.Allreduce(region_boundaries, global_boundaries, MPI.SUM)
global_boundaries //= num_workers
for i in range(num_workers):
if i == 0:
self._boundaries[new_name][i] = global_boundaries[i]
elif i == num_workers-1:
self._boundaries[new_name][i] = tensor_size-global_boundaries[i-1]
else:
self._boundaries[new_name][i] = global_boundaries[i]-global_boundaries[i-1]
assert sum(self._boundaries[new_name]) == tensor_size
for i in range(num_workers):
if i == 0:
self._region_offsets[new_name][i] = 0
else:
self._region_offsets[new_name][i] = global_boundaries[i-1]
boundaries = self._boundaries[new_name]
region_offsets = self._region_offsets[new_name]
#splitter = tensor_size // num_workers
#boundaries = [splitter] * num_workers
#boundaries[num_workers-1] += tensor_size % splitter
#region_offsets = [0] * num_workers
#for i in range(num_workers):
# region_offsets[i] = i * splitter
#reduced = np.zeros(boundaries[rank], dtype='float32')
with torch.no_grad():
split_tensors = torch.split(new_tensor, boundaries)
assert len(split_tensors) == num_workers
reduced_t = torch.zeros_like(split_tensors[rank].data)
# set throttle
throttle = min(4, num_workers)
#throttle = min(8, num_workers)
msg_chunks = math.ceil(num_workers/throttle)
ssizes = np.zeros(num_workers, dtype='int32')
rsizes = np.zeros(num_workers, dtype='int32')
r_offsets = np.zeros(num_workers, dtype='int32')
all_value_sbuffers = []
all_index_sbuffers = []
split_topk_indexes = []
with torch.no_grad():
for i in range(num_workers):
indexes, values = self._compression.compressbythreshold(tensor=split_tensors[i], thres=local_threshold)
ssizes[i] = torch.numel(values.data)
send_index_buffer = indexes.cpu().numpy().astype(np.int32)
send_value_buffer = values.cpu().numpy().astype(np.float32)
all_index_sbuffers.append(send_index_buffer)
all_value_sbuffers.append(send_value_buffer)
findexes = indexes.cpu().numpy() + region_offsets[i]
split_topk_indexes.append(findexes)
local_topk_indexes = np.concatenate(split_topk_indexes)
if local_topk_indexes.size < 2*topk_value/3:
self._local_threshold[new_name] /= self._scale
elif local_topk_indexes.size > 5*topk_value/4:
self._local_threshold[new_name] *= self._scale
compress_t1 = time.time()-cstime
if rank == 0 and settings.PROFILING:
print("counter: ", self._allreduce_counter[new_name], "rank: ", rank, "split_local_topk: ", ssizes, "local topk elements: ", ssizes.sum(), "localtopk threshold: ", local_threshold)
if settings.PROFILING_NORM:
self._local_topk_dict[self._allreduce_counter[new_name]] = ssizes.sum()
# transpose the send buffer sizes
comm.Alltoall(ssizes, rsizes)
total_red_size = rsizes.sum()
whole_value_rbuffers = np.zeros(total_red_size, dtype='float32')
whole_index_rbuffers = np.zeros(total_red_size, dtype='int32')
all_value_rbuffers = []
all_index_rbuffers = []
r_roll_rsizes = np.roll(rsizes[::-1], rank+1)
r_offsets[1:] = r_roll_rsizes[:-1]
r_offsets = np.cumsum(r_offsets)
for i in range(num_workers):
if i < num_workers-1:
all_index_rbuffers.append(whole_index_rbuffers[r_offsets[i]:r_offsets[i+1]])
all_value_rbuffers.append(whole_value_rbuffers[r_offsets[i]:r_offsets[i+1]])
else:
all_index_rbuffers.append(whole_index_rbuffers[r_offsets[i]: ])
all_value_rbuffers.append(whole_value_rbuffers[r_offsets[i]: ])
dsts = self._dsts
srcs = self._srcs
chunk_offsets = []
inner_chunk_offsets = []
inner_chunk_sizes = []
for i in range(msg_chunks):
chunk_offsets.append(r_offsets[i*throttle])
inner_chunk_offsets.append(r_offsets[i*throttle : min((i+1)*throttle, num_workers)] - r_offsets[i*throttle])
inner_chunk_sizes.append(r_roll_rsizes[i*throttle : min((i+1)*throttle, num_workers)])
# communicate for the first chunk
reqs = []
for i in range(0, throttle):
dst = dsts[i]
src = srcs[i]
if i == 0:
assert dst == src == rank
all_value_rbuffers[i][:] = all_value_sbuffers[dst][:]
all_index_rbuffers[i][:] = all_index_sbuffers[dst][:]
else:
#exchange buffer
reqs.append(comm.Isend([all_index_sbuffers[dst], MPI.INT], dest=dst, tag=1))
reqs.append(comm.Irecv([all_index_rbuffers[i], MPI.INT], source=src, tag=1))
reqs.append(comm.Isend([all_value_sbuffers[dst], MPI.FLOAT], dest=dst, tag=2))
reqs.append(comm.Irecv([all_value_rbuffers[i], MPI.FLOAT], source=src, tag=2))
MPI.Request.Waitall(reqs)
# communicate for the following chunk with computation overlapping
for i in range(1, msg_chunks):
reqs = []
for j in range(throttle*i, min(num_workers, throttle*(i+1))):
dst = dsts[j]
src = srcs[j]
#exchange buffer
reqs.append(comm.Isend([all_index_sbuffers[dst], MPI.INT], dest=dst, tag=1))
reqs.append(comm.Irecv([all_index_rbuffers[j], MPI.INT], source=src, tag=1))
reqs.append(comm.Isend([all_value_sbuffers[dst], MPI.FLOAT], dest=dst, tag=2))
reqs.append(comm.Irecv([all_value_rbuffers[j], MPI.FLOAT], source=src, tag=2))
chunk_offset = chunk_offsets[i-1]
chunk_size = chunk_offsets[i]-chunk_offsets[i-1]
inner_chunk_offset = inner_chunk_offsets[i-1]
inner_chunk_size = inner_chunk_sizes[i-1]
tmp_indexes = torch.from_numpy(whole_index_rbuffers[chunk_offset:chunk_offset+chunk_size]).cuda(new_tensor.device, non_blocking=False).long()
tmp_values = torch.from_numpy(whole_value_rbuffers[chunk_offset:chunk_offset+chunk_size]).cuda(new_tensor.device, non_blocking=False)
for k in range(inner_chunk_offset.size):
if inner_chunk_size[k] == 0:
pass
#assert tmp_values.size == 0
else:
reduced_t[tmp_indexes[inner_chunk_offset[k]:inner_chunk_offset[k]+inner_chunk_size[k]]] += tmp_values[inner_chunk_offset[k]:inner_chunk_offset[k]+inner_chunk_size[k]]
MPI.Request.Waitall(reqs)
# computate for the last chunk
chunk_offset = chunk_offsets[msg_chunks-1]
chunk_size = total_red_size-chunk_offsets[msg_chunks-1]
inner_chunk_offset = inner_chunk_offsets[msg_chunks-1]
inner_chunk_size = inner_chunk_sizes[msg_chunks-1]
tmp_indexes = torch.from_numpy(whole_index_rbuffers[chunk_offset:chunk_offset+chunk_size]).cuda(new_tensor.device, non_blocking=False).long()
tmp_values = torch.from_numpy(whole_value_rbuffers[chunk_offset:chunk_offset+chunk_size]).cuda(new_tensor.device, non_blocking=False)
for k in range(inner_chunk_offset.size):
if inner_chunk_size[k] == 0:
pass
#assert tmp_values.size == 0
else:
reduced_t[tmp_indexes[inner_chunk_offset[k]:inner_chunk_offset[k]+inner_chunk_size[k]]] += tmp_values[inner_chunk_offset[k]:inner_chunk_offset[k]+inner_chunk_size[k]]
reduced = reduced_t.cpu().numpy()
#print("reduced value: ", reduced.sum())
send_size = np.array([0], dtype='int32')
recv_sizes = np.zeros(num_workers, dtype='int32')
offsets = np.zeros(num_workers, dtype='int32')
#gtopk_thd = int(topk_value * 1.5)
if self._allreduce_counter[new_name] % global_threshold_recompute_interval == 0:
gindexes = np.nonzero(reduced)[0]
gvalues = reduced[gindexes]
#gindexes += region_offsets[rank]
send_size[0] = gvalues.size * 2
comm.Allgather(send_size, recv_sizes)
offsets[1:] = recv_sizes[:-1]
offsets = np.cumsum(offsets)
total_size = recv_sizes.sum()
recv_buffer = np.zeros(total_size, dtype='float32')
send_buffer = np.zeros(send_size[0], dtype='float32')
send_buffer[0 : send_size[0]//2] = gindexes.astype(np.int32)
send_buffer[send_size[0]//2 : send_size[0]] = gvalues.astype(np.float32)
comm.Allgatherv(send_buffer, [recv_buffer, recv_sizes, offsets, MPI.FLOAT])
all_gindexes = np.zeros(total_size//2, dtype='int32')
all_gvalues = np.zeros(total_size//2, dtype='float32')
for i in range(num_workers):
offset = offsets[i]//2
size = recv_sizes[i]//2
all_gindexes[offset:offset+size] = recv_buffer[offsets[i]:offsets[i]+size].astype(np.int32) + region_offsets[i]
all_gvalues[offset:offset+size] = recv_buffer[offsets[i]+size:offsets[i]+2*size].astype(np.float32)
with torch.no_grad():
cstime = time.time()
all_gindexes_tensor = torch.from_numpy(all_gindexes).to(device=new_tensor.device).long()
all_gvalues_tensor = torch.from_numpy(all_gvalues).to(device=new_tensor.device)
gtopk_values, gtopk_values_indexes, global_threshold = self._compression.k2globalthreshold(all_gvalues_tensor, max(topk_value, 1))
compress_t2 = time.time()-cstime
#gtopk_values, gtopk_values_indexes, global_threshold = self._compression.k2globalthreshold(all_gvalues_tensor, max(gtopk_thd, 1))
gtopk_gindexes_tensor = all_gindexes_tensor[gtopk_values_indexes]
gtopk_values /= num_workers
result = new_tensor
result.data.fill_(0.)
result[gtopk_gindexes_tensor] = gtopk_values
gtopk_gindexes_tensor = gtopk_gindexes_tensor.type(torch.IntTensor)
gtopk_gindexes = gtopk_gindexes_tensor.cpu().numpy()
involved_indexes = np.intersect1d(local_topk_indexes, gtopk_gindexes, return_indices=False, assume_unique=True)
self._compression.update_residuals(involved_indexes=involved_indexes, name=new_name)
self._global_threshold[new_name] = global_threshold
if rank == 0 and settings.PROFILING:
print("counter: ", self._allreduce_counter[new_name], "rank: ", rank, "global topk elements: ", gtopk_gindexes.size, "globaltopk threshold: ", self._global_threshold[new_name])
if settings.PROFILING_NORM:
self._global_topk_dict[self._allreduce_counter[new_name]] = gtopk_gindexes.size
else:
if settings.PROFILING_GRAD and ((self._allreduce_counter[new_name] >= 3991 and self._allreduce_counter[new_name] <= 3995) or (self._allreduce_counter[new_name] >= 12991 and self._allreduce_counter[new_name] <= 12995)):
gindexes = np.nonzero(reduced)[0]
gvalues = reduced[gindexes]
send_size[0] = gvalues.size * 2
comm.Allgather(send_size, recv_sizes)
offsets[1:] = recv_sizes[:-1]
offsets = np.cumsum(offsets)
total_size = recv_sizes.sum()
recv_buffer = np.zeros(total_size, dtype='float32')
send_buffer = np.zeros(send_size[0], dtype='float32')
send_buffer[0 : send_size[0]//2] = gindexes.astype(np.int32)
send_buffer[send_size[0]//2 : send_size[0]] = gvalues.astype(np.float32)
comm.Allgatherv(send_buffer, [recv_buffer, recv_sizes, offsets, MPI.FLOAT])
all_gindexes = np.zeros(total_size//2, dtype='int32')
all_gvalues = np.zeros(total_size//2, dtype='float32')
for i in range(num_workers):
offset = offsets[i]//2
size = recv_sizes[i]//2
all_gindexes[offset:offset+size] = recv_buffer[offsets[i]:offsets[i]+size].astype(np.int32) + region_offsets[i]
all_gvalues[offset:offset+size] = recv_buffer[offsets[i]+size:offsets[i]+2*size].astype(np.float32)
np_results = np.zeros(tensor_size, dtype='float32')
np_results[all_gindexes] = all_gvalues
if rank == 0:
tensor_np = np_results
np.save('vggglobalgrad'+str(self._allreduce_counter[new_name])+'_k'+str(topk_value)+'.npy', tensor_np)
ok_thrds = np.zeros(1, dtype='float32')
ok_thrds[0] = self._global_threshold[new_name]
np.save('vggglobalthrds'+str(self._allreduce_counter[new_name])+'_k'+str(topk_value)+'.npy', ok_thrds)
cstime = time.time()
with torch.no_grad():
reduced_tensor = torch.from_numpy(reduced).to(device=new_tensor.device)
gindexes, gvalues = self._compression.compressbythreshold(tensor=reduced_tensor, thres=self._global_threshold[new_name])
compress_t2 = time.time()-cstime
gindexes = gindexes.cpu().numpy()
#gindexes += region_offsets[rank]
gvalues = gvalues.cpu().numpy()
send_size[0] = gvalues.size * 2
comm.Allgather(send_size, recv_sizes)
if rank == 0 and settings.PROFILING:
print("counter: ", self._allreduce_counter[new_name], "rank: ", rank, "split_global_topk: ", recv_sizes)
offsets[1:] = recv_sizes[:-1]
offsets = np.cumsum(offsets)
total_size = recv_sizes.sum()
send_buffer = np.zeros(send_size[0], dtype='float32')
send_buffer[0 : send_size[0]//2] = gindexes.astype(np.int32)
send_buffer[send_size[0]//2 : send_size[0]] = gvalues.astype(np.float32)
## #comm.Barrier()
## #stime0 = time.time()
#balanced_block_size = total_size//num_workers
#residual = total_size%num_workers
#balanced_block_sizes = np.zeros(num_workers, dtype='int32')
#for i in range(num_workers):
# balanced_block_sizes[i] = balanced_block_size
#for i in range(residual):
# balanced_block_sizes[i] += 1
#assert balanced_block_sizes.sum() == total_size
##if rank == 0:
## print("counter: ", self._allreduce_counter[new_name], "rank: ", rank, "balanced split_global_topk: ", balanced_block_sizes)
#balanced_offsets = np.zeros(num_workers, dtype='int32')
#balanced_offsets[1:] = balanced_block_sizes[:-1]
#balanced_offsets = np.cumsum(balanced_offsets)
#recv_buffer = np.zeros(balanced_block_sizes[rank], dtype='float32')
#balanced_offset = balanced_offsets[rank]
#if rank < num_workers-1:
# balanced_offset_next = balanced_offsets[rank+1]
#else:
# balanced_offset_next = total_size
#offset = offsets[rank]
#offset_next = offset + send_size[0]
#send_metas = []
#recv_metas = []
## construct the send metadata
#for i in range(num_workers):
# if offset < balanced_offsets[i]:
# assert i > 0
# offset_flow = offset
# for j in range(i, num_workers):
# if balanced_offsets[j] <= offset_next:
# if balanced_offsets[j]-offset_flow > 0:
# send_metas.append([j-1, offset_flow-offset, balanced_offsets[j]-offset])
# if j == num_workers - 1 and balanced_offsets[j] < offset_next:
# send_metas.append([j, balanced_offsets[j]-offset, offset_next-offset])
# else:
# if(offset_next-offset_flow>0):
# send_metas.append([j-1, offset_flow-offset, offset_next-offset])
# break
# offset_flow = balanced_offsets[j]
# break
# if i == num_workers-1 and (offset_next-offset)>0:
# send_metas.append([i, offset-offset, offset_next-offset])
## construct the recv metadata
#for i in range(num_workers):
# if balanced_offset < offsets[i]:
# assert i > 0
# offset_flow = balanced_offset
# for j in range(i, num_workers):
# if offsets[j] <= balanced_offset_next:
# if offsets[j]-offset_flow > 0:
# recv_metas.append([j-1, offset_flow-balanced_offset, offsets[j]-balanced_offset])
# if j == num_workers - 1 and offsets[j] < balanced_offset_next:
# recv_metas.append([j, offsets[j]-balanced_offset, balanced_offset_next-balanced_offset])
# else:
# if(balanced_offset_next-offset_flow>0):
# recv_metas.append([j-1, offset_flow-balanced_offset, balanced_offset_next-balanced_offset])
# break
# offset_flow = offsets[j]
# break
# if i == num_workers-1 and (balanced_offset_next-balanced_offset)>0:
# recv_metas.append([i, balanced_offset-balanced_offset, balanced_offset_next-balanced_offset])
#local_s_meta = None
#local_r_meta = None
## debug info
##local_s_meta_counter = 0
##local_r_meta_counter = 0
## balance buffers
#reqs1 = []
#for s_meta in send_metas:
# if s_meta[0] == rank:
# local_s_meta = s_meta
# #local_s_meta_counter += 1