cluster.yaml

__default__:
  partition: "low2"
  nodes: 1
  cpus: "{threads}"
  tasks: 1
  name: "{rule}.{wildcards}"
  output: "logs_slurm/{rule}.{wildcards}.out"
  time: "{params.time}"
  email: "scpeng@ucdavis.edu"
  email_type: "FAIL"
  mem: "2g"

subSample:
  mem: "10g"
  partition: "med2"

plotEnrichment:
  mem: "10g"
  partition: "med2"

plotEnrichment_macs2:
  mem: "10g"
  partition: "med2"

macs2:
  mem: "10g"
  partition: "bml"

fastqc:
  mem: "500M"

hmmratac:
  mem: "80g"
  partition: "bmm"

trim:
  mem: 3g

mapping:
  mem: 20g
  partition: "bmm"

convert_sam:
  mem: 4g

sort_bam:
  mem: 8g

sortShiftedReads:
  mem: 8g

markdup:
  mem: 20g

bam_stat:
  mem: 6g

filtered_stat:
  mem: 6g

EstFragSize:
  mem: 4g

bamCoverage:
  mem: 8g

makebedGraph:
  mem: 8g

multiBigWig:
  mem: 20g

getMitoReads:
  mem: 10g

chrMStats:
  mem: 6g

plotFingerprint_all:
  mem: 20g
  partition: "bmm"

filterBam:
  mem: 10g

shiftReads:
  mem: 8g