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WXD1.scaffolded_NP_61.fasta.out
318 lines (318 loc) · 28.8 KB
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WXD1.scaffolded_NP_61.fasta.out
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2151 11.1 7.2 1.4 NP_61 1 347 -457810 C DNAREP1_DSim RC/Helitron -325 367 1 1 346
948 2.9 42.1 0 NP_61 25140 25341 -432816 + Gypsy4_LTR LTR/Gypsy 1 287 0 18 201
767 17.6 6.5 7.2 NP_61 325259 325461 -132696 + NOMAD_LTR LTR/Gypsy 188 518 0 165 202
1713 4.8 0.5 0 NP_61 189940 190145 -268012 + Chimpo_LTR LTR/Gypsy 1 207 0 107 205
1713 4.8 0.5 0 NP_61 194176 194381 -263776 + Chimpo_LTR LTR/Gypsy 1 207 0 107 205
243 28.6 5.3 5.3 NP_61 290766 290972 -167185 + TIRANT_I LTR/Gypsy 6955 7161 -329 145 206
1844 1.9 0 0.5 NP_61 194382 194591 -263566 + Gypsy-7_DSe-LTR LTR/Gypsy 50 258 0 106 209
514 28.1 1.9 0.9 NP_61 288867 289078 -169079 + Gypsy-5_DSim-I LTR/Gypsy 4130 4343 -2166 143 211
1502 7 10.2 0.4 NP_61 14954 15169 -442988 C G5A_DM Non-LTR_retrotransposon/Jockey -2449 392 156 7 215
1699 8.1 0 0 NP_61 324563 324784 -133373 + ZAM_I LTR/Gypsy 424 645 -6845 164 221
1115 12.6 11.2 4.2 NP_61 383075 383297 -74860 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 27 201 222
1097 13.1 11.2 4.2 NP_61 385576 385798 -72359 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 27 206 222
1072 13.6 11.2 4.2 NP_61 389960 390182 -67975 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 27 215 222
428 27.5 2.7 3.6 NP_61 18492 18715 -439442 + Gypsy_I LTR/Gypsy 5793 5982 -1180 8 223
1098 12.6 11.2 4.6 NP_61 391841 392064 -66093 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 27 220 223
1073 13.1 11.1 5 NP_61 401278 401502 -56655 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 27 226 224
1633 3.6 0.1 0.4 NP_61 40859 41084 -417073 + Gypsy-13_DSim-LTR LTR/Gypsy 1 221 -83 20 225
1070 21.5 0.4 1.3 NP_61 453896 454121 -4036 + Gypsy3_LTR LTR/Gypsy 169 392 -6 255 225
447 25.4 14.7 0.9 NP_61 324846 325084 -133073 + Gypsy-3_DSe-LTR LTR/Gypsy 100 377 -2 166 238
444 23.4 16.8 0.8 NP_61 333728 333966 -124191 + Gypsy-3_DSe-LTR LTR/Gypsy 96 377 -2 168 238
1152 12.6 10.7 5.1 NP_61 63589 63831 -394326 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 37 242
1107 13.9 10.7 5.1 NP_61 102961 103203 -354954 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 64 242
1055 13.9 10.7 5.5 NP_61 349266 349509 -108648 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 176 243
1055 13.9 10.7 5.5 NP_61 351200 351443 -106714 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 180 243
1088 13.8 10.2 5.1 NP_61 363762 364005 -94152 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 189 243
1088 13.8 10.2 5.1 NP_61 366298 366541 -91616 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 192 243
1082 13.4 10.7 5.5 NP_61 371357 371600 -86557 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 197 243
1107 13 10.7 5.5 NP_61 387456 387699 -70458 C R1_DSi Non-LTR_retrotransposon/R1 -5170 264 9 211 243
1308 11.3 0.4 11.2 NP_61 151547 151794 -306363 C DIVER_LTR LTR/Pao 0 224 1 87 247
1631 5.7 0.6 0.7 NP_61 346611 346859 -111298 + Gypsy-13_DSim-LTR LTR/Gypsy 1 314 -457 172 248
795 15.8 24 1 NP_61 311956 312205 -145952 + GTWIN_I LTR/Gypsy 1 307 -6200 161 249
576 20.7 15.6 2 NP_61 457628 457877 -280 + DNAREP1_DSim RC/Helitron 125 555 -39 258 249
2310 0.8 0.4 0 NP_61 135152 135403 -322754 + Gypsy-2_DSe-LTR LTR/Gypsy 1 253 0 84 251
2320 0.4 0.4 0 NP_61 141819 142070 -316087 + Gypsy-2_DSe-LTR LTR/Gypsy 1 253 0 84 251
2163 2.8 0 0.4 NP_61 61571 61824 -396333 C Gypsy-8_DSe-LTR LTR/Gypsy 0 288 36 30 253
1068 8 4 7.1 NP_61 405073 405332 -52825 + DM412 LTR/Gypsy 1 379 0 231 259
1131 17.9 1.9 8.5 NP_61 124107 124369 -333788 + Gypsy-3_DSe-I LTR/Gypsy 1 247 -7126 76 262
1166 16.6 1.9 8.5 NP_61 405463 405725 -52432 + GTWIN_I LTR/Gypsy 1 247 -7126 231 262
1986 4 2.3 4.7 NP_61 351477 351740 -106417 + BLOOD_LTR LTR/Gypsy 1 258 -141 182 263
1298 8.9 0 6.8 NP_61 115969 116238 -341919 + Gypsy-3_DSe-LTR LTR/Gypsy 1 379 0 76 269
1301 9 0.4 7.3 NP_61 123686 123955 -334202 + Gypsy-3_DSe-LTR LTR/Gypsy 1 379 0 76 269
1726 9.8 11.7 0 NP_61 65234 65507 -392650 C R1_DM Non-LTR_retrotransposon/R1 -4742 614 309 39 273
1920 10.6 0 0 NP_61 77708 77981 -380176 C R1_DM Non-LTR_retrotransposon/R1 -4742 614 341 48 273
1920 10.6 0 0 NP_61 104603 104876 -353281 C R1_DM Non-LTR_retrotransposon/R1 -4742 614 341 66 273
1902 9.5 1.4 1.4 NP_61 248171 248449 -209708 C R1_DM Non-LTR_retrotransposon/R1 -4743 613 335 126 278
1991 9.7 0 0 NP_61 252256 252534 -205623 C R1_DM Non-LTR_retrotransposon/R1 -4743 613 335 128 278
1988 10 0 0 NP_61 256327 256605 -201552 C R1_DM Non-LTR_retrotransposon/R1 -4743 613 335 130 278
2526 2.1 0.3 0 NP_61 30960 31245 -426912 + Gypsy4_LTR LTR/Gypsy 1 287 0 18 285
2081 4.7 1.3 0 NP_61 75918 76206 -381951 + DM412B_LTR LTR/Gypsy 139 482 -89 45 288
2106 4.3 1.3 0 NP_61 105702 105990 -352167 C DM412B_LTR LTR/Gypsy -89 482 139 69 288
1888 11.4 4.2 0 NP_61 387178 387466 -70691 C R1_DM Non-LTR_retrotransposon/R1 -4747 609 309 210 288
1888 11.4 4.2 0 NP_61 391563 391851 -66306 C R1_DM Non-LTR_retrotransposon/R1 -4747 609 309 219 288
1901 11.4 4.1 0 NP_61 363483 363772 -94385 C R1_DM Non-LTR_retrotransposon/R1 -4746 610 309 188 289
1901 11.4 4.1 0 NP_61 366019 366308 -91849 C R1_DM Non-LTR_retrotransposon/R1 -4746 610 309 191 289
1350 16.9 5.1 1.3 NP_61 151991 152284 -305873 + DM412B_LTR LTR/Gypsy 161 465 -106 90 293
1969 10.9 4.1 0 NP_61 350917 351210 -106947 C R1_DM Non-LTR_retrotransposon/R1 -4742 614 309 179 293
1103 18.9 9.2 2.9 NP_61 258998 259292 -198865 + TIRANT_LTR LTR/Gypsy 1 313 -104 132 294
1095 18.9 9.2 2.9 NP_61 267196 267490 -190667 + TIRANT_LTR LTR/Gypsy 1 313 -104 134 294
1958 11.1 4 0 NP_61 371071 371367 -86790 C R1_DM Non-LTR_retrotransposon/R1 -4739 617 309 196 296
2002 10.4 4 0 NP_61 382789 383085 -75072 C R1_DM Non-LTR_retrotransposon/R1 -4739 617 309 202 296
1184 14.5 2 8.5 NP_61 292948 293245 -164912 + Gypsy-13_DSim-I LTR/Gypsy 5238 5443 -1 147 297
2485 4 0 0 NP_61 370765 371066 -87091 C R1_DSi Non-LTR_retrotransposon/R1 -4350 1084 783 195 301
2531 2.7 0.7 2.3 NP_61 151219 151525 -306632 C DIVER_I LTR/Pao -5341 302 1 87 306
2237 7.3 1 0 NP_61 169931 170244 -287913 + Gypsy-2_DSim-LTR LTR/Gypsy 1 392 -771 98 313
1940 9 0.6 0.5 NP_61 293216 293530 -164627 + Gypsy-13_DSim-LTR LTR/Gypsy 1 376 -395 147 314
2077 7.6 4.4 0.9 NP_61 52433 52749 -405408 + Gypsy-12_DSim-LTR LTR/Gypsy 1 328 -3 29 316
2065 8.3 4.4 0.9 NP_61 53136 53452 -404705 C Gypsy-12_DSim-LTR LTR/Gypsy -3 328 1 31 316
2693 2.2 0.6 0.9 NP_61 270234 270551 -187606 C NINJA_LTR LTR/Pao 0 317 1 138 317
2677 2.5 0.6 0.9 NP_61 285158 285475 -172682 C NINJA_LTR LTR/Pao 0 317 1 142 317
1689 17.8 7.5 0 NP_61 156517 156837 -301320 + Gypsy-7_DSim-I LTR/Gypsy 4682 5026 -1151 93 320
2373 9.3 0 0.6 NP_61 269681 270003 -188154 C R1_DM Non-LTR_retrotransposon/R1 -560 4796 4476 136 322
2604 3.2 0.3 2.2 NP_61 343520 343842 -114315 + NINJA_LTR LTR/Pao 1 317 0 173 322
2575 3.8 0 2.2 NP_61 346107 346429 -111728 + NINJA_LTR LTR/Pao 1 316 -1 173 322
1911 11.2 7.8 1.1 NP_61 112237 112569 -345588 C DM412B_LTR LTR/Gypsy -89 482 128 72 332
2436 6.5 0 2.5 NP_61 382477 382809 -75348 C R1_DSi Non-LTR_retrotransposon/R1 -4350 1084 760 201 332
2053 14.8 0 0.3 NP_61 189551 189886 -268271 + IDEFIX_I LTR/Gypsy 4045 4379 -1249 105 335
2905 2.4 0 0.3 NP_61 170352 170691 -287466 C Gypsy-4_DSim-LTR LTR/Gypsy 0 339 1 99 339
2905 2.4 0 0.3 NP_61 177131 177470 -280687 C Gypsy-4_DSim-LTR LTR/Gypsy 0 339 1 99 339
1218 17.1 20 2.6 NP_61 21877 22221 -435936 + Gypsy_LTR LTR/Gypsy 1 405 -77 13 344
2077 8.3 4.9 1.3 NP_61 45769 46114 -412043 + Gypsy-12_DSim-LTR LTR/Gypsy 1 328 -3 26 345
369 34 3.1 2.8 NP_61 286905 287261 -170896 + Gypsy-5_DSim-I LTR/Gypsy 697 1054 -5455 140 356
2419 9.4 6 0.3 NP_61 181071 181434 -276723 C DIVER2_LTR LTR/Pao 0 385 1 102 363
2446 9.1 6 0.3 NP_61 187749 188112 -270045 + DIVER2_LTR LTR/Pao 1 385 0 104 363
1527 18.5 8.2 2.1 NP_61 564 928 -457229 C Gypsy_LTR LTR/Gypsy -95 387 1 2 364
1496 19 8.2 2.1 NP_61 311501 311865 -146292 + Gypsy_LTR LTR/Gypsy 1 387 -95 160 364
1735 11.3 6.9 1.9 NP_61 59808 60174 -397983 C Gypsy-12_DSim-LTR LTR/Gypsy 0 594 1 33 366
47149 6.1 1 0.4 NP_61 37904 38274 -419883 + ZAM_I LTR/Gypsy 9690 10310 -1 17 370
3258 1.4 0.3 1.4 NP_61 275799 276171 -181986 + Gypsy-5_DSim-LTR LTR/Gypsy 1 369 0 139 372
3112 3.7 4 0 NP_61 132647 133020 -325137 C DIVER_I LTR/Pao -4398 1245 857 83 373
57936 0.5 0.6 0 NP_61 224069 224443 -233714 + Gypsy5_I LTR/Gypsy 6763 7162 -406 121 374
2393 10.6 4.5 2.1 NP_61 195253 195628 -262529 + DIVER2_LTR LTR/Pao 1 385 0 109 375
2084 8.4 3 1.7 NP_61 52750 53126 -405031 C Gypsy-8_DSe-I LTR/Gypsy -4946 1535 1154 30 376
3166 4 0.5 0 NP_61 324139 324515 -133642 + STALKER4_LTR LTR/Gypsy 1 379 -23 162 376
3126 1.4 0.3 6 NP_61 284046 284435 -173722 + Gypsy-5_DSim-LTR LTR/Gypsy 1 369 0 140 389
2226 10.1 6.1 1.5 NP_61 196286 196679 -261478 + Gypsy-10_DSim-I LTR/Gypsy 5089 5500 -128 110 393
1331 21.8 8.1 1.2 NP_61 444390 444783 -13374 C DNAREP1_DSim RC/Helitron 0 692 272 248 393
2931 7.2 0 1.5 NP_61 311104 311500 -146657 + DM412 LTR/Gypsy 2285 2675 -3802 159 396
3323 2.8 4.8 0 NP_61 203691 204088 -254069 + TIRANT_LTR LTR/Gypsy 1 417 0 114 397
2253 10.2 2.8 4.1 NP_61 294060 294457 -163700 + Gypsy-31_DYa-I LTR/Gypsy 1 393 -7175 149 397
2534 6.1 0.8 10.4 NP_61 24590 24989 -433168 + Gypsy-5_DSim-LTR LTR/Gypsy 5 369 0 17 399
3226 4 0 1.3 NP_61 126678 127078 -331079 + Gypsy-5_DSim-I LTR/Gypsy 2970 3365 -3797 79 400
2643 5.2 0.7 10.3 NP_61 132211 132614 -325543 + Gypsy-5_DSim-LTR LTR/Gypsy 1 369 0 81 403
2643 5.2 0.7 10.3 NP_61 142672 143075 -315082 + Gypsy-5_DSim-LTR LTR/Gypsy 1 369 0 85 403
2613 5.2 0.7 10.6 NP_61 160288 160692 -297465 + Gypsy-5_DSim-LTR LTR/Gypsy 1 369 0 95 404
2647 11 2.7 1 NP_61 293530 293934 -164223 + Gypsy-31_DYa-I LTR/Gypsy 7155 7566 -2 148 404
2756 7.6 2.5 0 NP_61 14090 14496 -443661 C G5A_DM Non-LTR_retrotransposon/Jockey -1062 1779 1283 7 406
2415 13.8 1 2.5 NP_61 310539 310946 -147211 + GTWIN_LTR LTR/Gypsy 1 402 -93 158 407
2414 13.8 1 2.5 NP_61 317935 318342 -139815 + GTWIN_LTR LTR/Gypsy 1 402 -93 161 407
45925 6.5 1.4 0.3 NP_61 340652 341060 -117097 + ZAM_I LTR/Gypsy 6994 7490 0 170 408
3189 8.5 0.7 0 NP_61 80754 81166 -376991 + R1_DM Non-LTR_retrotransposon/R1 4318 4733 -623 51 412
3221 8.2 0.7 0 NP_61 82553 82965 -375192 + R1_DM Non-LTR_retrotransposon/R1 4318 4733 -623 53 412
2057 13.3 6.3 4 NP_61 189164 189577 -268580 + Gypsy-7_DSim-LTR LTR/Gypsy 1 423 -19 93 413
3644 2.6 0 0 NP_61 211608 212024 -246133 + TIRANT_LTR LTR/Gypsy 1 417 0 116 416
1887 16.8 4.6 2.6 NP_61 445378 445797 -12360 + Gypsy1-LTR_DM LTR/Gypsy 2 392 -16 250 419
3868 0.2 0 0 NP_61 412180 412603 -45554 + Stalker2_LTR LTR/Gypsy 1 424 0 237 423
3868 0.2 0 0 NP_61 419779 420202 -37955 + Stalker2_LTR LTR/Gypsy 1 424 0 237 423
2294 11.5 9.7 1.1 NP_61 334331 334755 -123402 + ZAM_I LTR/Gypsy 949 1410 -6080 170 424
3837 0.7 0.2 0.2 NP_61 216157 216586 -241571 + Gypsy5_LTR LTR/Gypsy 1 430 0 120 429
2161 15.1 9.6 1.3 NP_61 202226 202661 -255496 + ZAM_LTR LTR/Gypsy 1 472 0 112 435
323 28.7 6.8 4.7 NP_61 289986 290427 -167730 + TIRANT_I LTR/Gypsy 6369 6819 -873 145 441
2108 7.9 6.5 2.5 NP_61 295423 295876 -162281 + Gypsy-12_DSim-LTR LTR/Gypsy 1 594 0 151 453
3914 0.9 0.7 0 NP_61 413891 414348 -43809 + Stalker2_I LTR/Gypsy 1126 1586 -5810 237 457
1944 7.4 7.3 10.7 NP_61 455141 455601 -2556 C DNAREP1_DM RC/Helitron 0 692 1 257 460
3124 7.8 6.3 2.5 NP_61 14492 14953 -443204 C G5A_DM Non-LTR_retrotransposon/Jockey -1842 999 521 7 461
2629 12.7 8.8 0.8 NP_61 410827 411304 -46853 + MDG1_I LTR/Gypsy 69 584 -6012 236 477
3100 11.3 1.2 0.6 NP_61 441089 441567 -16590 + DM412B_LTR LTR/Gypsy 1 482 -89 243 478
1453 24.8 1.8 4.2 NP_61 288364 288852 -169305 + Gypsy-5_DSim-I LTR/Gypsy 3280 3757 -3405 143 488
3137 10.5 1 2.5 NP_61 406245 406733 -51424 + DM412B_LTR LTR/Gypsy 1 482 -89 233 488
3754 1.5 2 7 NP_61 434541 435045 -23112 + DM412 LTR/Gypsy 1 481 -90 241 504
4655 0.8 0 0 NP_61 425489 425994 -32163 + TABOR_LTR LTR/Gypsy 1 506 0 239 505
4032 1.5 0.6 7 NP_61 428108 428620 -29537 + DM412B_LTR LTR/Gypsy 1 482 -89 240 512
3747 3.8 0.6 7.3 NP_61 65645 66158 -391999 + DM412B_LTR LTR/Gypsy 1 482 -89 41 513
2974 12.9 2.9 0.2 NP_61 405726 406244 -51913 + DM412 LTR/Gypsy 642 1174 -5303 232 518
4426 1.1 0.2 1.9 NP_61 7012 7534 -450623 + LINEJ1_DM Non-LTR_retrotransposon/Jockey 4519 5020 0 3 522
2983 10.3 7.5 3.2 NP_61 179245 179776 -278381 + Gypsy-7_DSim-I LTR/Gypsy 374 927 -5669 93 531
4057 8.5 0.6 0 NP_61 371584 372115 -86042 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4489 197 531
4134 5.3 3.6 1.5 NP_61 111569 112117 -346040 C DM412 LTR/Gypsy -5900 577 27 70 548
4404 3.8 1.6 0.2 NP_61 451670 452223 -5934 C TRANSIB2 DNA/CMC-Transib 0 2844 2283 251 553
318 29.4 8.9 5.7 NP_61 287550 288116 -170041 + Gypsy-5_DSim-I LTR/Gypsy 3202 3413 -3799 140 566
3664 9.7 2.4 2.4 NP_61 202735 203317 -254840 + Gypsy8_I LTR/Gypsy 2451 3033 -1314 113 582
4437 9 0.7 0 NP_61 358858 359446 -98711 C R1_DM Non-LTR_retrotransposon/R1 -446 4910 4318 185 588
5107 1.2 0 0.6 NP_61 428621 429210 -28947 + DM412 LTR/Gypsy 1 577 -5900 241 589
4902 3.4 0 1.4 NP_61 126088 126681 -331476 + Gypsy-5_DSim-I LTR/Gypsy 1629 2214 -4948 79 593
4168 9.3 6.9 0.3 NP_61 394788 395381 -62776 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 223 593
4193 8.9 6.9 0.3 NP_61 397474 398067 -60090 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 225 593
5575 0.2 0 0 NP_61 195688 196284 -261873 + Gypsy-10_DSim-I LTR/Gypsy 3737 4333 -855 110 596
4308 9 5.8 0 NP_61 361487 362084 -96073 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4391 186 597
4265 9.2 5.8 0.2 NP_61 369253 369851 -88306 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4391 194 598
5354 1.8 0.1 0.1 NP_61 142074 142677 -315480 + Gypsy-5_DSim-I LTR/Gypsy 6413 7159 -3 85 603
3338 13.2 5.6 1.6 NP_61 152319 152927 -305230 + DM412 LTR/Gypsy 1 633 -5844 91 608
5082 4.7 0 0.7 NP_61 347818 348439 -109718 C R1_DSi Non-LTR_retrotransposon/R1 -3417 2017 1400 174 621
4714 9.7 0.5 0 NP_61 63815 64444 -393713 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4391 37 629
4775 9.4 0.5 0 NP_61 76289 76918 -381239 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4391 46 629
4656 10.5 0.5 0 NP_61 78097 78726 -379431 + R1_DSi Non-LTR_retrotransposon/R1 4391 5023 -411 50 629
4686 9.2 0.6 0.2 NP_61 84353 84982 -373175 + R1_DM Non-LTR_retrotransposon/R1 4318 4950 -406 55 629
4656 10.5 0.5 0 NP_61 103187 103816 -354341 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 4391 64 629
4759 9.4 0.5 0 NP_61 104990 105619 -352538 + R1_DSi Non-LTR_retrotransposon/R1 4391 5023 -411 68 629
4758 8.7 0.6 0.2 NP_61 349493 350122 -108035 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 177 629
4712 9.1 0.6 0.2 NP_61 383301 383930 -74227 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 203 629
4735 8.9 0.6 0.2 NP_61 387683 388312 -69845 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 212 629
4750 8.9 0.6 0.3 NP_61 86927 87557 -370600 + R1_DSi Non-LTR_retrotransposon/R1 4318 4950 -406 56 630
4750 8.9 0.6 0.3 NP_61 89498 90128 -368029 + R1_DSi Non-LTR_retrotransposon/R1 4318 4950 -406 57 630
4729 9.2 0.6 0.3 NP_61 92068 92698 -365459 + R1_DM Non-LTR_retrotransposon/R1 4318 4950 -406 59 630
4799 2.7 0.9 0.2 NP_61 323508 324138 -134019 + STALKER4_I LTR/Gypsy 5895 6530 0 162 630
4671 9.7 0.6 0.3 NP_61 392068 392698 -65459 C R1_DM Non-LTR_retrotransposon/R1 -406 4950 4318 221 630
4738 9.9 0.5 0 NP_61 363982 364618 -93539 C R1_DSi Non-LTR_retrotransposon/R1 -404 5030 4391 189 636
4738 9.9 0.5 0 NP_61 366518 367154 -91003 C R1_DSi Non-LTR_retrotransposon/R1 -404 5030 4391 192 636
5772 1.7 0.8 0 NP_61 156833 157483 -300674 C FW_DM Non-LTR_retrotransposon/Jockey -3534 1158 503 94 650
4091 14.2 0.8 0.6 NP_61 194592 195252 -262905 + IDEFIX_I LTR/Gypsy 4376 5037 -591 108 660
933 29.2 4.2 3.6 NP_61 289163 289823 -168334 + Gypsy-5_DSim-I LTR/Gypsy 5605 6148 -333 140 660
4238 9.1 7.5 0.7 NP_61 31246 31920 -426237 + ZAM_I LTR/Gypsy 642 1362 -6128 17 674
5726 3.3 0 0.6 NP_61 359482 360160 -97997 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1598 186 678
5796 3.2 0 0.6 NP_61 80037 80718 -377439 + R1_DSi Non-LTR_retrotransposon/R1 1595 2272 -3162 50 681
4771 8.3 4.6 0.4 NP_61 102268 102960 -355197 C R1_DSe Non-LTR_retrotransposon/R1 -4346 1071 350 63 692
4248 6.2 3.1 7.6 NP_61 284460 285157 -173000 C NINJA_I LTR/Pao -5342 669 1 142 697
6156 3.2 0 0.4 NP_61 127072 127793 -330364 + Gypsy-5_DSim-I LTR/Gypsy 3541 4259 -2903 79 721
5104 7.2 1.5 3.3 NP_61 384842 385575 -72582 C R1_DSe Non-LTR_retrotransposon/R1 -4347 1070 350 205 733
5104 7.2 1.5 3.3 NP_61 389226 389959 -68198 C R1_DSe Non-LTR_retrotransposon/R1 -4347 1070 350 214 733
6177 4.1 0 0.5 NP_61 76956 77697 -380460 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1535 47 741
6141 4.5 0 0.5 NP_61 103851 104592 -353565 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1535 65 741
6066 4.6 0 0.8 NP_61 64480 65223 -392934 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1535 38 743
6477 3.3 0 0.5 NP_61 350156 350916 -107241 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1516 178 760
2300 16.4 6 5.9 NP_61 294520 295282 -162875 + Gypsy-31_DYa-I LTR/Gypsy 422 884 -6684 149 762
728 19.4 2.5 14.7 NP_61 411414 412179 -45978 + MDG1_I LTR/Gypsy 3 1529 -4585 236 765
6669 2.8 1.7 0.2 NP_61 13296 14080 -444077 + DMCR1A Non-LTR_retrotransposon/CR1 3675 4470 0 6 784
5556 7.2 1.2 1.6 NP_61 66159 66960 -391197 + MDG1_I LTR/Gypsy 1 993 -5065 42 801
1762 32.7 0.8 0.9 NP_61 301694 302502 -155655 + HMSBEAGLE_I LTR/Gypsy 892 2113 -4416 155 808
4615 8.8 6.1 4.3 NP_61 400304 401113 -57044 C R1_DSi Non-LTR_retrotransposon/R1 -4161 1273 123 226 809
4038 20.3 0.3 0.3 NP_61 453081 453896 -4261 + Gypsy-7_DSim-I LTR/Gypsy 6157 6989 -419 254 815
2172 21.6 18.3 2.3 NP_61 216587 217413 -240744 + Gypsy-5_DSim-I LTR/Gypsy 25 981 -6181 120 826
3168 11.8 1.5 5.6 NP_61 348439 349267 -108890 C R1_DSe Non-LTR_retrotransposon/R1 -4329 1184 387 175 828
6581 4.1 3.9 0.1 NP_61 452223 453080 -5077 C TRANSIB2 DNA/CMC-Transib -1954 890 1 252 857
5023 11.8 0.8 2.1 NP_61 407980 408840 -49317 + DM412 LTR/Gypsy 949 2109 -4368 231 860
4572 6.2 6.5 1.1 NP_61 180205 181070 -277087 + Gypsy-7_DSim-I LTR/Gypsy 1227 2140 -4456 93 865
7308 3.8 0 0.5 NP_61 369894 370765 -87392 C R1_DSi Non-LTR_retrotransposon/R1 -3167 2267 1400 195 871
7289 4.1 0 0.5 NP_61 381601 382477 -75680 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1400 201 876
7299 4 0 0.5 NP_61 383966 384842 -73315 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1400 204 876
7299 4 0 0.5 NP_61 388350 389226 -68931 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1400 213 876
7912 1.2 0 1 NP_61 7534 8419 -449738 + LINEJ1_DM Non-LTR_retrotransposon/Jockey 4144 5020 0 4 885
3924 11.1 1.5 0.3 NP_61 114978 115871 -342286 C R1_DSi Non-LTR_retrotransposon/R1 -1987 3457 2491 64 893
6277 6.1 9.5 0.6 NP_61 188113 189009 -269148 C MDG1_I LTR/Gypsy -4456 2140 1164 103 896
6964 5.8 1.6 0 NP_61 66941 67838 -390319 + DM412 LTR/Gypsy 1246 2157 -4320 42 897
7046 6 1.1 0.3 NP_61 12403 13301 -444856 C G5A_DM Non-LTR_retrotransposon/Jockey -166 2675 1776 5 898
7683 3.7 0.4 0 NP_61 114076 114975 -343182 C R1_DSi Non-LTR_retrotransposon/R1 -5 5429 4526 74 899
7756 3.6 1 0 NP_61 41090 41997 -416160 C R1_DSi Non-LTR_retrotransposon/R1 -5 5429 4513 21 907
8079 2.3 0.1 0.3 NP_61 166277 167191 -290966 + Gypsy-7_DSim-I LTR/Gypsy 2914 3795 -3031 93 914
5778 9.1 1.3 4 NP_61 291666 292582 -165575 + Gypsy8_I LTR/Gypsy 2451 3343 -1004 146 916
3651 14.4 3.5 4 NP_61 22607 23525 -434632 + STALKER4_I LTR/Gypsy 285 1274 -5256 15 918
5569 9.7 0.9 5.8 NP_61 341134 342054 -116103 + Gypsy8_I LTR/Gypsy 2451 3328 -1019 172 920
7906 4.3 1.5 0 NP_61 143108 144045 -314112 C DIVER_I LTR/Pao -4398 1245 294 87 937
7908 1.1 1 1.9 NP_61 412727 413668 -44489 + Stalker2_I LTR/Gypsy 213 1145 -6251 237 941
7507 2.6 7.3 0.2 NP_61 25344 26291 -431866 + Gypsy4_I LTR/Gypsy 3 1017 -5271 18 947
8115 4.2 0.9 0 NP_61 346845 347808 -110349 C R1_DSi Non-LTR_retrotransposon/R1 -5 5429 4457 174 963
4875 11.5 6.5 2.3 NP_61 399334 400314 -57843 C R1_DSi Non-LTR_retrotransposon/R1 -4161 1273 123 226 980
8537 4.8 0 0 NP_61 398100 399116 -59041 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1256 226 1016
8687 4.4 0 0.4 NP_61 386135 387174 -70983 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1237 209 1039
8687 4.4 0 0.4 NP_61 390520 391559 -66598 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 1237 218 1039
1347 33.2 3.3 2.5 NP_61 19190 20237 -437920 + Gypsy-52_DEl-I LTR/Gypsy 4871 5553 -494 9 1047
8941 2.8 2.3 0 NP_61 23523 24584 -433573 + Gypsy-13_DSim-I LTR/Gypsy 3308 4393 -1051 16 1061
2649 26.4 2.4 11.4 NP_61 259597 260668 -197489 + TIRANT_I LTR/Gypsy 351 1336 -6356 133 1071
9359 4.1 1.4 0 NP_61 160725 161830 -296327 C DIVER_I LTR/Pao -4398 1245 124 97 1105
9797 1.9 0.1 0.2 NP_61 344980 346106 -112051 + NINJA_I LTR/Pao 4886 6011 0 173 1126
7744 12.7 0.9 0.1 NP_61 20761 21902 -436255 + Gypsy_I LTR/Gypsy 5384 7323 -338 8 1141
10171 1.2 0.8 0 NP_61 60421 61570 -396587 C Gypsy-8_DSe-I LTR/Gypsy -5322 1159 1 30 1149
7302 5.9 3.7 0.7 NP_61 343844 344995 -113162 + NINJA_I LTR/Pao 1690 2947 -3064 173 1151
6624 11.6 3.4 2.9 NP_61 406734 407901 -50256 + DM412 LTR/Gypsy 1 1174 -5303 234 1167
5459 1.9 6.7 1.4 NP_61 351871 353043 -105114 + BLOOD_I LTR/Gypsy 1 1237 -5376 183 1172
2685 17.6 4.6 7.4 NP_61 100974 102152 -356005 + Gypsy8_I LTR/Gypsy 3407 5443 -1 62 1178
10137 2.4 3.6 0 NP_61 403873 405067 -53090 C R1_DSi Non-LTR_retrotransposon/R1 -1796 3638 2401 230 1194
7408 2 1.2 0.6 NP_61 67839 69085 -389072 C ROO_I LTR/Pao 0 8256 7429 43 1246
4999 13.4 4.7 3.4 NP_61 380216 381467 -76690 + Gypsy-13_DSim-LTR LTR/Gypsy 1 829 -7068 199 1251
10165 4.3 2.5 1.6 NP_61 177867 179133 -279024 + Helena_Ds Non-LTR_retrotransposon/Jockey 3619 4897 -15 101 1266
5757 13.9 2.2 5.6 NP_61 99639 100960 -357197 + Gypsy8_I LTR/Gypsy 2457 3328 -1019 62 1321
2393 10.7 28.5 0.4 NP_61 409167 410489 -47668 + GTWIN_I LTR/Gypsy 2299 4044 -2377 231 1322
8169 8.9 2 1.4 NP_61 78710 80039 -378118 + R1_DSi Non-LTR_retrotransposon/R1 9 1433 -4001 50 1329
7012 8.5 9.4 6.6 NP_61 360161 361503 -96654 C R1_DSi Non-LTR_retrotransposon/R1 -4043 1391 9 186 1342
11321 4 0.4 0.3 NP_61 362125 363473 -94684 C R1_DSi Non-LTR_retrotransposon/R1 -3167 2267 917 187 1348
11371 3.9 0.4 0.3 NP_61 364661 366009 -92148 C R1_DSi Non-LTR_retrotransposon/R1 -3167 2267 917 190 1348
10997 4.5 2 0.6 NP_61 82964 84318 -373839 + R1_DSi Non-LTR_retrotransposon/R1 899 2272 -3162 54 1354
11211 4.2 1.7 0.3 NP_61 81165 82519 -375638 + R1_DSi Non-LTR_retrotransposon/R1 899 2272 -3162 52 1354
11156 7.2 0.6 0.3 NP_61 112643 114068 -344089 C R1_DSi Non-LTR_retrotransposon/R1 -3312 2122 692 73 1425
2807 19.8 6.5 6.2 NP_61 342048 343519 -114638 + Gypsy8_I LTR/Gypsy 3407 4093 -254 172 1471
2764 18.1 3.8 7.1 NP_61 212029 213511 -244646 + Gypsy8_I LTR/Gypsy 3407 5443 -1 117 1482
12092 7 0.1 0 NP_61 316421 317918 -140239 + GTWIN_I LTR/Gypsy 4921 6420 -1 161 1497
12124 5.1 2.8 0.3 NP_61 41985 43509 -414648 C R1_DM Non-LTR_retrotransposon/R1 -2003 3353 1792 22 1524
13887 2.2 3.2 0.2 NP_61 127784 129412 -328745 C FW_DM Non-LTR_retrotransposon/Jockey -2513 2179 503 80 1628
12155 4.9 1.1 4.4 NP_61 124373 126018 -332139 + Gypsy-5_DSim-I LTR/Gypsy 19 1612 -5550 79 1645
4021 27.9 2.9 2.3 NP_61 306178 307889 -150268 + Gypsy-53_DEl-I LTR/Gypsy 2325 4047 -342 156 1711
13270 6.2 4.6 0.9 NP_61 61810 63590 -394567 C R1_DSi Non-LTR_retrotransposon/R1 -3238 2196 361 36 1780
11182 7.2 1.6 1.2 NP_61 92682 94553 -363604 + R1_DSi Non-LTR_retrotransposon/R1 9 2220 -3214 60 1871
11489 7.9 1.4 1.2 NP_61 87541 89467 -368690 + R1_DSi Non-LTR_retrotransposon/R1 9 2272 -3162 57 1926
11499 7.8 1.4 1.2 NP_61 90112 92038 -366119 + R1_DSi Non-LTR_retrotransposon/R1 9 2272 -3162 58 1926
11411 8.1 1.4 1.2 NP_61 84966 86894 -371263 + R1_DSi Non-LTR_retrotransposon/R1 9 2272 -3162 56 1928
17065 1 0.1 0.6 NP_61 43506 45494 -412663 C Gypsy-8_DSe-I LTR/Gypsy -3116 3365 1387 23 1988
15448 6.2 3.5 0.6 NP_61 267626 269658 -188499 C R1_DSi Non-LTR_retrotransposon/R1 -2977 2457 366 135 2032
13154 7.7 4 1.2 NP_61 367199 369249 -88908 C R1_DSi Non-LTR_retrotransposon/R1 -3167 2267 27 193 2050
13282 7.5 4.1 1.2 NP_61 392731 394784 -63373 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 27 222 2053
13231 7.6 4.1 1.3 NP_61 395416 397470 -60687 C R1_DSi Non-LTR_retrotransposon/R1 -3162 2272 27 224 2054
17924 4 0.2 0 NP_61 328821 330881 -127276 + NOMAD_I LTR/Gypsy 2258 4322 -2250 167 2060
4433 16.4 2.3 8.4 NP_61 378168 380248 -77909 + Gypsy-13_DSim-I LTR/Gypsy 2481 5444 0 199 2080
9744 8.4 2.1 1 NP_61 425995 428107 -30050 + TABOR_I LTR/Gypsy 1 2346 -4250 239 2112
10119 21.6 0.1 0.2 NP_61 133013 135127 -323030 + Gypsy-2_DSe-I LTR/Gypsy 3807 5918 -591 84 2114
20884 0.1 0 0 NP_61 321280 323520 -134637 + Helena_Ds Non-LTR_retrotransposon/Jockey 2673 4912 0 163 2240
18179 3.3 2.1 0.7 NP_61 308277 310538 -147619 + STALKER4_I LTR/Gypsy 888 3182 -3348 157 2261
17818 5.9 0.3 3.1 NP_61 325443 327770 -130387 + NOMAD_I LTR/Gypsy 1 2259 -4313 167 2327
20106 3.1 0.8 0.1 NP_61 213812 216156 -242001 C R1_DSi Non-LTR_retrotransposon/R1 -331 5103 2743 119 2344
19556 4 1.3 0.1 NP_61 401506 403851 -54306 C R1_DSi Non-LTR_retrotransposon/R1 -411 5023 2649 229 2345
19087 4.6 1.5 0.8 NP_61 224442 226809 -231348 C R1_DSi Non-LTR_retrotransposon/R1 -2686 2748 366 123 2367
19825 3.7 0.7 0.2 NP_61 256628 258997 -199160 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 2489 131 2369
5717 17.6 5.9 6.5 NP_61 38347 40888 -417269 + Gypsy8_I LTR/Gypsy 2457 5443 -1 20 2541
13944 15.3 1.7 0.8 NP_61 167191 169890 -288267 + Gypsy-7_DSim-I LTR/Gypsy 4402 7154 -254 93 2699
24568 1.2 0.4 0 NP_61 318500 321272 -136885 + STALKER4_I LTR/Gypsy 3179 5961 -569 162 2772
10459 16 1.9 2.6 NP_61 330880 333661 -124496 + NOMAD_I LTR/Gypsy 4567 7528 -11 167 2781
20623 1.5 2.1 0.9 NP_61 69183 71966 -386191 C ROO_I LTR/Pao -5867 2389 1 43 2783
22361 4.2 1.5 1 NP_61 181435 184231 -273926 + Gypsy-7_DSim-I LTR/Gypsy 2136 4945 -1651 93 2796
13115 22.3 0.6 0.4 NP_61 129417 132216 -325941 + Gypsy5_I LTR/Gypsy 3715 6509 0 81 2799
13243 22.2 0.3 0.3 NP_61 157488 160293 -297864 + Gypsy5_I LTR/Gypsy 3715 6509 0 95 2805
28290 1.5 1.4 0.9 NP_61 276172 279434 -178723 + Gypsy-5_DSim-I LTR/Gypsy 1 3280 -3882 139 3262
26316 4.3 3.7 1 NP_61 184375 187748 -270409 C MDG1_I LTR/Gypsy -998 5598 2136 103 3373
9010 27 0.9 1 NP_61 302711 306192 -151965 + Gypsy-53_DEl-I LTR/Gypsy 1 5159 -1386 156 3481
19639 1.3 1.9 1 NP_61 152928 156520 -301637 + Gypsy-7_DSim-I LTR/Gypsy 1 3229 -3597 92 3592
32265 3.3 0.7 0.1 NP_61 252557 256327 -201830 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 1076 129 3770
32616 3.2 0.3 0 NP_61 248472 252256 -205901 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 1076 127 3784
32723 3.1 0.3 0 NP_61 244387 248171 -209986 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 1076 125 3784
33882 2.3 1 0.1 NP_61 71967 75921 -382236 + DM412 LTR/Gypsy 2153 6139 -338 44 3954
36624 0.9 0.7 0 NP_61 190146 194175 -263982 + Chimpo_I LTR/Gypsy 1 4059 0 107 4029
16304 15.3 0.6 0.6 NP_61 312242 316359 -141798 + GTWIN_I LTR/Gypsy 700 5021 -1486 161 4117
32189 4.3 1 0.4 NP_61 226832 230962 -227195 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 364 124 4130
23774 2.8 0.2 0.9 NP_61 162018 166305 -291852 + Gypsy-7_DSim-I LTR/Gypsy 1 7154 -254 93 4287
35432 3.3 0.6 0.4 NP_61 295854 300145 -158012 + Gypsy-12_DSim-I LTR/Gypsy 2 4300 -483 152 4291
23888 9.1 0.2 0.6 NP_61 279684 284051 -174106 + Gypsy-5_DSim-I LTR/Gypsy 2165 6509 0 140 4367
36439 4.3 1.8 0.4 NP_61 239920 244364 -213793 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 366 124 4444
36621 4.1 1.6 0.3 NP_61 230985 235429 -222728 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 366 124 4444
36424 4.2 1.8 0.4 NP_61 235452 239897 -218260 C R1_DSi Non-LTR_retrotransposon/R1 -565 4869 366 124 4445
40147 1.5 0.6 0.1 NP_61 26474 30959 -427198 + Gypsy4_I LTR/Gypsy 1778 6387 -24 18 4485
37471 0.8 0.8 0.7 NP_61 435046 439821 -18336 + TABOR_I LTR/Gypsy 1 6336 0 242 4775
36176 6.5 0.5 0.5 NP_61 94554 99560 -358597 + ZAM_I LTR/Gypsy 1 7490 0 61 5006
40070 3.4 2.7 2 NP_61 420217 425423 -32734 + Gypsy-8_DSim-I LTR/Gypsy 130 5372 -40 238 5206
40891 1.9 0.5 0.2 NP_61 414548 419778 -38379 + Stalker2_I LTR/Gypsy 1568 6530 0 237 5230
33035 5.2 1.5 0.1 NP_61 270552 275795 -182362 C NINJA_I LTR/Pao 0 5547 666 138 5243
33922 1.8 11.7 0 NP_61 429195 434556 -23601 + DM412 LTR/Gypsy 510 6477 0 241 5361
37121 5.4 0.8 0.6 NP_61 196691 202224 -255933 + Gypsy-13_DSim-I LTR/Gypsy 1 4393 -1051 111 5533
48220 1.5 1 0.4 NP_61 105987 111584 -346573 C DM412 LTR/Gypsy -338 6139 510 70 5597
47151 2.4 0.7 0.6 NP_61 353044 358732 -99425 + BLOOD_I LTR/Gypsy 1 6613 0 183 5688
45925 6.5 1.4 0.3 NP_61 334756 340538 -117619 + ZAM_I LTR/Gypsy 1 6993 -497 170 5782
25395 15 6.4 1.3 NP_61 445871 451668 -6489 + Gypsy1-I_DM LTR/Gypsy 87 6348 -664 250 5797
47149 6.1 1 0.4 NP_61 31940 37754 -420403 + ZAM_I LTR/Gypsy 1 9689 -622 17 5814
36035 7.3 1 0.4 NP_61 372116 378095 -80062 + Gypsy-13_DSim-I LTR/Gypsy 1 5216 -2681 198 5979
43229 11.3 0.7 0.5 NP_61 919 7011 -451146 C Gypsy_I LTR/Gypsy 0 6507 414 2 6092
38485 6.5 0.7 0.2 NP_61 46085 52181 -405976 + Gypsy-12_DSim-I LTR/Gypsy 1 5628 0 27 6096
41125 4.1 0.2 0.3 NP_61 53726 59833 -398324 C Gypsy-12_DSim-I LTR/Gypsy 0 5628 1 32 6107
37195 18.2 0.6 0.1 NP_61 260899 267204 -190953 + TIRANT_I LTR/Gypsy 1369 7692 0 133 6305
57936 0.5 0.6 0 NP_61 217589 223962 -234195 + Gypsy5_I LTR/Gypsy 1 6762 -806 121 6373
59282 0.3 0 0.1 NP_61 135404 141818 -316339 + Gypsy-2_DSe-I LTR/Gypsy 1 6411 0 84 6414
39341 2.2 0.1 0.3 NP_61 170692 177130 -281027 C Gypsy-4_DSim-I LTR/Gypsy 0 6364 1 99 6438
59080 3 0.6 0.1 NP_61 144046 151223 -306934 + Gypsy-11_DSim-I LTR/Gypsy 1 7150 -258 88 7177
59879 4.1 1.1 0.8 NP_61 116390 123685 -334472 + Gypsy-3_DSe-I LTR/Gypsy 1 7373 0 76 7295
64910 1.3 1.2 0.3 NP_61 204089 211616 -246541 + TIRANT_I LTR/Gypsy 1 7692 0 114 7527