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TODO.md

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TO DO

  • search for single-instance use packages and find a work around
  • Integrate CORE
  • build functions for spatial analysis, need 2d and 3d f(x)
  • generalize to add annotations to gene.index again, hgnc.symbol, use merge w/hgnc.symbol

done

  • change annotate_oncoKB to work with gene.index -- hgnc.symbol, use merge w/hgnc.symbol
  • same as above with depmap hgnc.symbol, use merge w/hgnc.symbol
  • Integrate with kegg pathway views, need entrez ID genes for this
  • Document functions
  • debug scclust integration
  • make a function for calling amplification and deletions on buildDNA -- Bastien
  • Integrate scclust