marburg7818.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    " marburg = \"\"\"\n",
    "        1 gatggatatt aaatgtccat caagcaagtg ttgtagaata ccaggggttt cacaggctgc\n",
    "       61 taaacttact aaattttaca taggattata taattctttt cgatacacgt tatatcttta\n",
    "      121 gcaaagtgag gaaaacagct ttatcatgtt agatgccagt tatccatttt aagtgaatcc\n",
    "      181 tttcctcaac atgcagcatc caactcaata tcctgatgca aggttgtcct ctcctataat\n",
    "      241 cctagaccag tgtgacttat tagccagaag tttagggttg tatagtcatt attcacataa\n",
    "      301 tccgaaattg cgtaattgta ggattccaca tcacatttac cgtttaagga attcgacagc\n",
    "      361 attaaagaca tttcttcaga attgttcgat actcaccgtt ccttttcatt caatttggga\n",
    "      421 tcatatttta acttccattc aatatgatgc aattaatcat gttgatgatt ttaaatacct\n",
    "      481 attgccatct gagctagtca agtatgcgaa ttgggacaac gagttcttaa aagcatatct\n",
    "      541 taataagatc ttaggacttg accatgtttt ttcagcttct gcaaggtcac agtgtgagga\n",
    "      601 tttttctcct aaggaaaatc cttattattg ggggatgtta ttactcgtgc atctatctca\n",
    "      661 acttgccagg aggataaaag gacaaagagg gtcattaaga agtaactgga aatttatagg\n",
    "      721 aacagatttg gagctgtttg gaatagcaga ttttgttatt tttaaggttc cagtaaaaac\n",
    "      781 aataatccga aatgctgtaa gcttacaagc ttcaaaaccg ggattaagaa tatggtaccg\n",
    "      841 tgaccaaaac ttgacccctt atctatgcga cgatgagttt attgtaagcg tcgctagtta\n",
    "      901 tgaatgtttt atcatgatta aagacgtctt cattgagagg tataacacat gggaaatctg\n",
    "      961 tgcccgcgct tggctcgaag acagtgatgg agctgattat cctcctcttg atgtgttagg\n",
    "     1021 tgaattatac aaccagggag accaaattat tgccatgtac ctggaggacg gtttcaaatt\n",
    "     1081 gattaaacac ttagaaccct tgtgtgtcag ctgtatacaa acacatggca tctttacacc\n",
    "     1141 aagaaaatac tggttccaat cacagatgat taagtcatat tatgatgaac tccatgatct\n",
    "     1201 caatttgaaa cttcaaattt cagacaataa ggctgagtgt gcccaaaact ttattaaaac\n",
    "     1261 tatagttcag gcgaaattga ctcctcaaca atactgtgaa ttattctccc tacaaaagca\n",
    "     1321 ttggggtcat cccgttttat acaatgatgt tgcactagat aaggttaaaa aacatgcgca\n",
    "     1381 atcgacaaaa atcttaaaac ctaaagtcat gtttgaaact ttttgtgttt tcaaatttat\n",
    "     1441 agtagcaaag aatcattatc attctcaagg atcatggtat aaaaccacac atgatttgca\n",
    "     1501 tttgactcca tatcttagac aacatattgt gtcaaattca tttccatcac aagccgaaat\n",
    "     1561 ttatcagcat ctttgggagt ggtatttcgt ggagcatgaa cctcttttct caactaaaat\n",
    "     1621 aataagtgat ttaagtatct ttataaaaga caggctgacc gctgtgaacc aggagtgttg\n",
    "     1681 ggacagtgtc ttcgatagaa gtgtattagg atataaccct cctgttagat ttcaatcaaa\n",
    "     1741 gagagtgcca gagcaatttt tgggtcaagc agacttttcc ttgaatcaaa tattagagtt\n",
    "     1801 tgctgaaaag ttagagtatt tggctccttc ttataggaat ttttccttct cattaaaaga\n",
    "     1861 aaaagagttg aatataggaa gaacttttgg gaagttaccg tatcgtgtca gaaatgtcca\n",
    "     1921 aacactcgca gaagccctgc tagcagatgg actggcaaaa gcattcccta gtaacatgat\n",
    "     1981 ggttgtcact gagagggaac agaaagaagc attattacat caggcttctt ggcaccacaa\n",
    "     2041 ttcagcaagc ataggggaga acgctatagt gaggggtgca agttttgtta ctgatcttga\n",
    "     2101 gaaatacaac ctcgccttcc gatatgaatt tacacggcat ttcatagact actgtaatcg\n",
    "     2161 atgttatggt gtgaagaatt tatttgattg gatgcatttt ttaataccac tatgttatat\n",
    "     2221 gcatgtcagt gacttttata gcccaccaca ttgtgtgaca gaagataatc gaaataaccc\n",
    "     2281 acctgattgt gctaatgctt atcattatca cttaggaggt atagagggac ttcagcagaa\n",
    "     2341 attgtggaca tgcatatcat gtgcccaaat cacccttgtg gagttaaaaa ctaaattaaa\n",
    "     2401 attgaagtcc agcgtcatgg gtgataatca atgtataaca actctaagtc tttttccaat\n",
    "     2461 tgatgctccc aacgattatc aagagaacga ggctgaattg aatgcggcac gagttgctgt\n",
    "     2521 cgaattagct attactacag gttatagtgg tatattttta aagcctgagg aaacatttgt\n",
    "     2581 ccattcaggg ttcatttatt ttggtaaaaa gcaatatctc aacggtgttc aactgccgca\n",
    "     2641 atcattgaaa acaatggcaa ggtgtggacc cttatctgac tctattttcg atgatcttca\n",
    "     2701 aggttctctg gccagtattg gtacatcctt tgagagagga acaagcgaga cacggcacat\n",
    "     2761 ttttccgagc cgttggatag cttcattcca ttcaatgtta gcaataaatt tattaaatca\n",
    "     2821 gaatcacctt gggtttcctc tagggttcaa tattgatatt tcttgtttca aaaagcctct\n",
    "     2881 taccttctcg gaaaaattaa ttgctctcat aacgccccaa gttttaggag ggttatcatt\n",
    "     2941 tttaaatcca gaaaaattgt tctaccggaa cataagtgat cctctcactt caggtctatt\n",
    "     3001 tcaactcaag aatgcattgg aatttcttga aaaggaagaa ttattctata tcttgatttc\n",
    "     3061 taaaaaacct ggtttagcag atgcctcaga ttttgtcatg aatccattag gcttaaatgt\n",
    "     3121 accaagatca aaggaaataa taacgttcct tagacaaaca gttcgcgaaa atatcacgat\n",
    "     3181 cacgtcacaa aatagaataa taaattctct tttccacata ggttctgatt tagaggacca\n",
    "     3241 aagagtgtgt gagtggcttt tatcatcaaa ccctgtaatg agccgatttg ctgctgacat\n",
    "     3301 cttttcaaga acacctagtg gaaaacggct tcaagtctta ggctatctag aaggaacaag\n",
    "     3361 aacattacta gcttctcgga caatcagttt aactacagaa ggaacaatgt tgatgaaatt\n",
    "     3421 aagagaatta acgagaaacc gatggaaaag ttggttttct tatattgatg cactggacga\n",
    "     3481 tgatttatct gagtccttgg aaaagttcac atgtactgtt gatgtggcta atttcttgag\n",
    "     3541 ggcatattca tggtctgacg tcttaaaagg gaaaaggcta attggtgcca cactgccatg\n",
    "     3601 tttactagag caatttgagg taaagtggat taatttatct gaggatttaa gggaacaatt\n",
    "     3661 taatctatct tcagactcaa aatcaactat aaacttgttg ccgtatgact gtaaggaact\n",
    "     3721 gcgacttgaa ggaagcaatg acacagagtt aaattatgtc agttgtgctc ttgaccggaa\n",
    "     3781 agttgtccag aaacatccct ctgttaatcg tctagcttgg acgataggaa atcgagcacc\n",
    "     3841 gtatattggc tcacggacag aagataagat cggttatcct cccttaagag taaattgccc\n",
    "     3901 atcagcagca cttaaagaag ctattgagat ggtttctaga ttgttatggg tgactcaagg\n",
    "     3961 cactgcagac cgagaaaaat tgcttattcc tcttctcaat tcaagagtaa atctggacta\n",
    "     4021 tcagacagtg cttaactttt tacctacaca ctactcaggc aacatagttc atagatataa\n",
    "     4081 tgatcaatat ggacaacatt cctttatggc aaacaggatg agtaatacat ctacacgtgc\n",
    "     4141 aattatatca actaacacac tgggtaaata tgctggggga ggtcaagctg ctattgatag\n",
    "     4201 taatataatc tttcaaaata ctattaattt aggagttgca gttttagata ttgcattgtc\n",
    "     4261 tcttgctaaa ttgtcgtcag catcaaatgt cactttccgt ttaatgttaa ataagtgctg\n",
    "     4321 cactcggcat gtaccgtccg aatacctata ttttgataaa cctttagatg tggatttgaa\n",
    "     4381 caagtatatg gacaatgagt tggtttatga caatgaccct ctttgcagtg ggattaaagg\n",
    "     4441 gagattaggc agagtatctc gatcaacact ctcattgagt ttgaatgtca gtgacattgg\n",
    "     4501 ttcttatgac tttccaacta ttgctgcatg gacactagga gaaactatag tcggaagcat\n",
    "     4561 tttttctgat gaatcttctc aaagtacgga tccaataagc tcaggttgca caaaaacttt\n",
    "     4621 cgtcacacat ttccttgtgt atccagttga gagtatattt tatgcattcg gagctaactt\n",
    "     4681 aatagttgaa agtttaagtc taagtaggat caaatcaatt aagaacctct cagatttgac\n",
    "     4741 attccttata tcatccacaa tcaggaattt atcacataga tcacttcgga ttcttcaatc\n",
    "     4801 tactttccga catgaattgg tgctcacccg actagcccac cacataccgt taatttcttt\n",
    "     4861 aatgttaggg ggctctgcag gagagaagag ttcatcagat gctgttcggc tatttcttac\n",
    "     4921 agcaagttat cagaatttta tcaataattt cagttgtctg atgaagaagg gtcagtcatc\n",
    "     4981 gctaccggtt tggctttact ttcctagtga agggcaacaa ttaaagccta tattaaaaat\n",
    "     5041 cttacagaga ttatcagact tgttatcacc tgacaaaatt caaaagcgta aaattttggc\n",
    "     5101 tgacacctgt tgtccaattg gcagcttttg ggtctatcca agcaagtcca caaggactaa\n",
    "     5161 ccattattat gcaagcctta attattggag agacaaagct aataaggtta agaatactcc\n",
    "     5221 tttttcacac ttgataaatt gttcatttcc tgaattttct tcacatacca gttcagtctc\n",
    "     5281 ctctaatcaa caagtgacca attcgaagta tattgtttat ccagaaaata tcactgaaat\n",
    "     5341 aaatgcaaga accagattaa taaattatgg atcaacagct ctacagggga tggacaccaa\n",
    "     5401 gatgccactc tcagagcaaa atctagtcga aaattgtcga ccatcagagg gcatcagatt\n",
    "     5461 caaggacaat caaaaaataa caaaacatga ccagagatgt gagagggagg aatcttcacc\n",
    "     5521 gcaacagatg ttccctgaag ataacatgca gactcctgcg cacatacata gttcctcccc\n",
    "     5581 atttcaaatc cttataaaat cactagatgc acatgaggac tttgatgcct cgaagataat\n",
    "     5641 cttaaattct gaaataaata atcttaacct tacggagtat actcttaata caaagttatt\n",
    "     5701 gacaactcct accaggacag aaattttaga tacaagtccg ttacaatcct ctagatattc\n",
    "     5761 atcaacttcc agggaacggt ctctactatc cagagaacaa gcttcatatt tgtacgttga\n",
    "     5821 ttgcagtaat attccttcta tctctctaga cccaggtttt cggagtatgt ctgatcagaa\n",
    "     5881 tcaagttcaa atgttaatca atacctacaa acgtgattta catgcttgtt ttgatagcaa\n",
    "     5941 ccaattctgt cggtttacag gggtagtctc atcaatgcat tacaagcttt atgatctttt\n",
    "     6001 gcctccaggt aaattgaaaa aggcaatttg tttggccgaa ggggaaggaa gtggtgctcg\n",
    "     6061 gttacttttg aagtggaagg aaacggatta tttattcttc aacactttgg ctacggattc\n",
    "     6121 acaacaagaa gccgagattt tgagtggccg ggtaataccg agaatgttgt ataacataga\n",
    "     6181 cagattaagt gctttgcttg aatcaaggag actaatattg aacaacctaa ctatccaaat\n",
    "     6241 tacagatatt acaaatccat tatggctaga ttctgtaata catatttacc tgaagatagt\n",
    "     6301 gacattctta caatggactg cagagaccac caaggatgaa acaagggaac agctttataa\n",
    "     6361 aactattgtg aatatttgga cacgtacttc tcctaatatc ccaaaaatta gcatcatcaa\n",
    "     6421 ggtattttta ttagactatg aagggacttt attcttaatg aagaatgcta ttcagtatta\n",
    "     6481 tgggcaagtt caactcaaga aaccatatag ctcaaatgca aaaaactcag aatggtactt\n",
    "     6541 gtgttgcggt aaacgaagaa ttcaacggct ccaaattgat ttctcagacc aggtgggaat\n",
    "     6601 ttttctgatt tgtaaagcaa tgtcacgcca aagacaagca attccttact ggttaaaaca\n",
    "     6661 tatagaaaag aattatcctg cttcattaca cgagtttttc ctaactttgg gtttcccttc\n",
    "     6721 tttagagtca tctttctgcc atcgttatac tattccattc agtgaaggaa aggctctttt\n",
    "     6781 tcacaaggtc cagtcttatg ttcgtcaagg caaacaacat ttacattctc ttatgttgga\n",
    "     6841 ttatgaaaca atcacctcta ctagacttga gaaatcactt tatttgctca ttaagggaaa\n",
    "     6901 gataactaaa tattacaatg atatattaaa gttaaatcta gtcatcaagg cagtagaaaa\n",
    "     6961 aggtaaaaat tggtcacaac ttgttgagat ccttcctaat atgcattcag tatgcatagt\n",
    "     7021 gcacgtggat catgagtgtt ctggatgcga gaaacggtta ttacttaaat tggattttat\n",
    "     7081 cagaaataca aagatcgcag aacaaaaatt acttaacaga gtaatcgggt atatcctatt\n",
    "     7141 ctttccattc ggtctgttta aatctggatc attaagggca taatttcaac agagagaact\n",
    "     7201 tcatttaatt tacaaaaaca atctatttaa gagtgagggt tacattgtct aagatattgt\n",
    "     7261 atgagaagta ataaaataaa taagaaaacg aaaagactat tagacagctt attttataca\n",
    "     7321 agataatctt atatcgcttt aggcctcaca caagtgagaa aattacgcgc acagattaac\n",
    "     7381 tagtgattag tgtttggtca caccagaggt aactttttaa cgttaattac tcagatgtta\n",
    "     7441 ttgctcataa ttagcattaa tattggcaca ttgggtgaat ccttgagctt tatccctaat\n",
    "     7501 atggtgtaag aaattaagga aatactgaga tacactagtt gaattgaatt atgacatacc\n",
    "     7561 atatatcata aatataaaaa agtgtctgct gtaatctaca agcacctctt ttaaatacat\n",
    "     7621 taggaaaaga attaagttac cgttgagatc aaaaaaacca cgtcatgttt tctctgatga\n",
    "     7681 caagtgataa aacttcgtag ttaaatttct agaatgtcga tgtgaatgta aattaagaaa\n",
    "     7741 aacaaatata taaaattaaa aaattaaaaa gctttgatat aagtaaaaca aaacattctt\n",
    "     7801 catctttttt gtgtgtgt\"\"\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "with open('/Users/SOUMYA RANJAN/Desktop/marburg/marburg.txt', 'r') as file:\n",
    "    marburg = file.read()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "' 1 gatggatatt aaatgtccat caagcaagtg ttgtagaata ccaggggttt cacaggctgc\\n       61 taaacttact aaattttaca taggattata taattctttt cgatacacgt tatatcttta\\n      121 gcaaagtgag gaaaacagct ttatcatgtt agatgccagt tatccatttt aagtgaatcc\\n      181 tttcctcaac atgcagcatc caactcaata tcctgatgca aggttgtcct ctcctataat\\n      241 cctagaccag tgtgacttat tagccagaag tttagggttg tatagtcatt attcacataa\\n      301 tccgaaattg cgtaattgta ggattccaca tcacatttac cgtttaagga attcgacagc\\n      361 attaaagaca tttcttcaga attgttcgat actcaccgtt ccttttcatt caatttggga\\n      421 tcatatttta acttccattc aatatgatgc aattaatcat gttgatgatt ttaaatacct\\n      481 attgccatct gagctagtca agtatgcgaa ttgggacaac gagttcttaa aagcatatct\\n      541 taataagatc ttaggacttg accatgtttt ttcagcttct gcaaggtcac agtgtgagga\\n      601 tttttctcct aaggaaaatc cttattattg ggggatgtta ttactcgtgc atctatctca\\n      661 acttgccagg aggataaaag gacaaagagg gtcattaaga agtaactgga aatttatagg\\n      721 aacagatttg gagctgtttg gaatagcaga ttttgttatt tttaaggttc cagtaaaaac\\n      781 aataatccga aatgctgtaa gcttacaagc ttcaaaaccg ggattaagaa tatggtaccg\\n      841 tgaccaaaac ttgacccctt atctatgcga cgatgagttt attgtaagcg tcgctagtta\\n      901 tgaatgtttt atcatgatta aagacgtctt cattgagagg tataacacat gggaaatctg\\n      961 tgcccgcgct tggctcgaag acagtgatgg agctgattat cctcctcttg atgtgttagg\\n     1021 tgaattatac aaccagggag accaaattat tgccatgtac ctggaggacg gtttcaaatt\\n     1081 gattaaacac ttagaaccct tgtgtgtcag ctgtatacaa acacatggca tctttacacc\\n     1141 aagaaaatac tggttccaat cacagatgat taagtcatat tatgatgaac tccatgatct\\n     1201 caatttgaaa cttcaaattt cagacaataa ggctgagtgt gcccaaaact ttattaaaac\\n     1261 tatagttcag gcgaaattga ctcctcaaca atactgtgaa ttattctccc tacaaaagca\\n     1321 ttggggtcat cccgttttat acaatgatgt tgcactagat aaggttaaaa aacatgcgca\\n     1381 atcgacaaaa atcttaaaac ctaaagtcat gtttgaaact ttttgtgttt tcaaatttat\\n     1441 agtagcaaag aatcattatc attctcaagg atcatggtat aaaaccacac atgatttgca\\n     1501 tttgactcca tatcttagac aacatattgt gtcaaattca tttccatcac aagccgaaat\\n     1561 ttatcagcat ctttgggagt ggtatttcgt ggagcatgaa cctcttttct caactaaaat\\n     1621 aataagtgat ttaagtatct ttataaaaga caggctgacc gctgtgaacc aggagtgttg\\n     1681 ggacagtgtc ttcgatagaa gtgtattagg atataaccct cctgttagat ttcaatcaaa\\n     1741 gagagtgcca gagcaatttt tgggtcaagc agacttttcc ttgaatcaaa tattagagtt\\n     1801 tgctgaaaag ttagagtatt tggctccttc ttataggaat ttttccttct cattaaaaga\\n     1861 aaaagagttg aatataggaa gaacttttgg gaagttaccg tatcgtgtca gaaatgtcca\\n     1921 aacactcgca gaagccctgc tagcagatgg actggcaaaa gcattcccta gtaacatgat\\n     1981 ggttgtcact gagagggaac agaaagaagc attattacat caggcttctt ggcaccacaa\\n     2041 ttcagcaagc ataggggaga acgctatagt gaggggtgca agttttgtta ctgatcttga\\n     2101 gaaatacaac ctcgccttcc gatatgaatt tacacggcat ttcatagact actgtaatcg\\n     2161 atgttatggt gtgaagaatt tatttgattg gatgcatttt ttaataccac tatgttatat\\n     2221 gcatgtcagt gacttttata gcccaccaca ttgtgtgaca gaagataatc gaaataaccc\\n     2281 acctgattgt gctaatgctt atcattatca cttaggaggt atagagggac ttcagcagaa\\n     2341 attgtggaca tgcatatcat gtgcccaaat cacccttgtg gagttaaaaa ctaaattaaa\\n     2401 attgaagtcc agcgtcatgg gtgataatca atgtataaca actctaagtc tttttccaat\\n     2461 tgatgctccc aacgattatc aagagaacga ggctgaattg aatgcggcac gagttgctgt\\n     2521 cgaattagct attactacag gttatagtgg tatattttta aagcctgagg aaacatttgt\\n     2581 ccattcaggg ttcatttatt ttggtaaaaa gcaatatctc aacggtgttc aactgccgca\\n     2641 atcattgaaa acaatggcaa ggtgtggacc cttatctgac tctattttcg atgatcttca\\n     2701 aggttctctg gccagtattg gtacatcctt tgagagagga acaagcgaga cacggcacat\\n     2761 ttttccgagc cgttggatag cttcattcca ttcaatgtta gcaataaatt tattaaatca\\n     2821 gaatcacctt gggtttcctc tagggttcaa tattgatatt tcttgtttca aaaagcctct\\n     2881 taccttctcg gaaaaattaa ttgctctcat aacgccccaa gttttaggag ggttatcatt\\n     2941 tttaaatcca gaaaaattgt tctaccggaa cataagtgat cctctcactt caggtctatt\\n     3001 tcaactcaag aatgcattgg aatttcttga aaaggaagaa ttattctata tcttgatttc\\n     3061 taaaaaacct ggtttagcag atgcctcaga ttttgtcatg aatccattag gcttaaatgt\\n     3121 accaagatca aaggaaataa taacgttcct tagacaaaca gttcgcgaaa atatcacgat\\n     3181 cacgtcacaa aatagaataa taaattctct tttccacata ggttctgatt tagaggacca\\n     3241 aagagtgtgt gagtggcttt tatcatcaaa ccctgtaatg agccgatttg ctgctgacat\\n     3301 cttttcaaga acacctagtg gaaaacggct tcaagtctta ggctatctag aaggaacaag\\n     3361 aacattacta gcttctcgga caatcagttt aactacagaa ggaacaatgt tgatgaaatt\\n     3421 aagagaatta acgagaaacc gatggaaaag ttggttttct tatattgatg cactggacga\\n     3481 tgatttatct gagtccttgg aaaagttcac atgtactgtt gatgtggcta atttcttgag\\n     3541 ggcatattca tggtctgacg tcttaaaagg gaaaaggcta attggtgcca cactgccatg\\n     3601 tttactagag caatttgagg taaagtggat taatttatct gaggatttaa gggaacaatt\\n     3661 taatctatct tcagactcaa aatcaactat aaacttgttg ccgtatgact gtaaggaact\\n     3721 gcgacttgaa ggaagcaatg acacagagtt aaattatgtc agttgtgctc ttgaccggaa\\n     3781 agttgtccag aaacatccct ctgttaatcg tctagcttgg acgataggaa atcgagcacc\\n     3841 gtatattggc tcacggacag aagataagat cggttatcct cccttaagag taaattgccc\\n     3901 atcagcagca cttaaagaag ctattgagat ggtttctaga ttgttatggg tgactcaagg\\n     3961 cactgcagac cgagaaaaat tgcttattcc tcttctcaat tcaagagtaa atctggacta\\n     4021 tcagacagtg cttaactttt tacctacaca ctactcaggc aacatagttc atagatataa\\n     4081 tgatcaatat ggacaacatt cctttatggc aaacaggatg agtaatacat ctacacgtgc\\n     4141 aattatatca actaacacac tgggtaaata tgctggggga ggtcaagctg ctattgatag\\n     4201 taatataatc tttcaaaata ctattaattt aggagttgca gttttagata ttgcattgtc\\n     4261 tcttgctaaa ttgtcgtcag catcaaatgt cactttccgt ttaatgttaa ataagtgctg\\n     4321 cactcggcat gtaccgtccg aatacctata ttttgataaa cctttagatg tggatttgaa\\n     4381 caagtatatg gacaatgagt tggtttatga caatgaccct ctttgcagtg ggattaaagg\\n     4441 gagattaggc agagtatctc gatcaacact ctcattgagt ttgaatgtca gtgacattgg\\n     4501 ttcttatgac tttccaacta ttgctgcatg gacactagga gaaactatag tcggaagcat\\n     4561 tttttctgat gaatcttctc aaagtacgga tccaataagc tcaggttgca caaaaacttt\\n     4621 cgtcacacat ttccttgtgt atccagttga gagtatattt tatgcattcg gagctaactt\\n     4681 aatagttgaa agtttaagtc taagtaggat caaatcaatt aagaacctct cagatttgac\\n     4741 attccttata tcatccacaa tcaggaattt atcacataga tcacttcgga ttcttcaatc\\n     4801 tactttccga catgaattgg tgctcacccg actagcccac cacataccgt taatttcttt\\n     4861 aatgttaggg ggctctgcag gagagaagag ttcatcagat gctgttcggc tatttcttac\\n     4921 agcaagttat cagaatttta tcaataattt cagttgtctg atgaagaagg gtcagtcatc\\n     4981 gctaccggtt tggctttact ttcctagtga agggcaacaa ttaaagccta tattaaaaat\\n     5041 cttacagaga ttatcagact tgttatcacc tgacaaaatt caaaagcgta aaattttggc\\n     5101 tgacacctgt tgtccaattg gcagcttttg ggtctatcca agcaagtcca caaggactaa\\n     5161 ccattattat gcaagcctta attattggag agacaaagct aataaggtta agaatactcc\\n     5221 tttttcacac ttgataaatt gttcatttcc tgaattttct tcacatacca gttcagtctc\\n     5281 ctctaatcaa caagtgacca attcgaagta tattgtttat ccagaaaata tcactgaaat\\n     5341 aaatgcaaga accagattaa taaattatgg atcaacagct ctacagggga tggacaccaa\\n     5401 gatgccactc tcagagcaaa atctagtcga aaattgtcga ccatcagagg gcatcagatt\\n     5461 caaggacaat caaaaaataa caaaacatga ccagagatgt gagagggagg aatcttcacc\\n     5521 gcaacagatg ttccctgaag ataacatgca gactcctgcg cacatacata gttcctcccc\\n     5581 atttcaaatc cttataaaat cactagatgc acatgaggac tttgatgcct cgaagataat\\n     5641 cttaaattct gaaataaata atcttaacct tacggagtat actcttaata caaagttatt\\n     5701 gacaactcct accaggacag aaattttaga tacaagtccg ttacaatcct ctagatattc\\n     5761 atcaacttcc agggaacggt ctctactatc cagagaacaa gcttcatatt tgtacgttga\\n     5821 ttgcagtaat attccttcta tctctctaga cccaggtttt cggagtatgt ctgatcagaa\\n     5881 tcaagttcaa atgttaatca atacctacaa acgtgattta catgcttgtt ttgatagcaa\\n     5941 ccaattctgt cggtttacag gggtagtctc atcaatgcat tacaagcttt atgatctttt\\n     6001 gcctccaggt aaattgaaaa aggcaatttg tttggccgaa ggggaaggaa gtggtgctcg\\n     6061 gttacttttg aagtggaagg aaacggatta tttattcttc aacactttgg ctacggattc\\n     6121 acaacaagaa gccgagattt tgagtggccg ggtaataccg agaatgttgt ataacataga\\n     6181 cagattaagt gctttgcttg aatcaaggag actaatattg aacaacctaa ctatccaaat\\n     6241 tacagatatt acaaatccat tatggctaga ttctgtaata catatttacc tgaagatagt\\n     6301 gacattctta caatggactg cagagaccac caaggatgaa acaagggaac agctttataa\\n     6361 aactattgtg aatatttgga cacgtacttc tcctaatatc ccaaaaatta gcatcatcaa\\n     6421 ggtattttta ttagactatg aagggacttt attcttaatg aagaatgcta ttcagtatta\\n     6481 tgggcaagtt caactcaaga aaccatatag ctcaaatgca aaaaactcag aatggtactt\\n     6541 gtgttgcggt aaacgaagaa ttcaacggct ccaaattgat ttctcagacc aggtgggaat\\n     6601 ttttctgatt tgtaaagcaa tgtcacgcca aagacaagca attccttact ggttaaaaca\\n     6661 tatagaaaag aattatcctg cttcattaca cgagtttttc ctaactttgg gtttcccttc\\n     6721 tttagagtca tctttctgcc atcgttatac tattccattc agtgaaggaa aggctctttt\\n     6781 tcacaaggtc cagtcttatg ttcgtcaagg caaacaacat ttacattctc ttatgttgga\\n     6841 ttatgaaaca atcacctcta ctagacttga gaaatcactt tatttgctca ttaagggaaa\\n     6901 gataactaaa tattacaatg atatattaaa gttaaatcta gtcatcaagg cagtagaaaa\\n     6961 aggtaaaaat tggtcacaac ttgttgagat ccttcctaat atgcattcag tatgcatagt\\n     7021 gcacgtggat catgagtgtt ctggatgcga gaaacggtta ttacttaaat tggattttat\\n     7081 cagaaataca aagatcgcag aacaaaaatt acttaacaga gtaatcgggt atatcctatt\\n     7141 ctttccattc ggtctgttta aatctggatc attaagggca taatttcaac agagagaact\\n     7201 tcatttaatt tacaaaaaca atctatttaa gagtgagggt tacattgtct aagatattgt\\n     7261 atgagaagta ataaaataaa taagaaaacg aaaagactat tagacagctt attttataca\\n     7321 agataatctt atatcgcttt aggcctcaca caagtgagaa aattacgcgc acagattaac\\n     7381 tagtgattag tgtttggtca caccagaggt aactttttaa cgttaattac tcagatgtta\\n     7441 ttgctcataa ttagcattaa tattggcaca ttgggtgaat ccttgagctt tatccctaat\\n     7501 atggtgtaag aaattaagga aatactgaga tacactagtt gaattgaatt atgacatacc\\n     7561 atatatcata aatataaaaa agtgtctgct gtaatctaca agcacctctt ttaaatacat\\n     7621 taggaaaaga attaagttac cgttgagatc aaaaaaacca cgtcatgttt tctctgatga\\n     7681 caagtgataa aacttcgtag ttaaatttct agaatgtcga tgtgaatgta aattaagaaa\\n     7741 aacaaatata taaaattaaa aaattaaaaa gctttgatat aagtaaaaca aaacattctt\\n     7801 catctttttt gtgtgtgt'"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "marburg"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "for a in \" \\n0123456789\":\n",
    "    marburg=marburg.replace(a,\"\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'gatggatattaaatgtccatcaagcaagtgttgtagaataccaggggtttcacaggctgctaaacttactaaattttacataggattatataattcttttcgatacacgttatatctttagcaaagtgaggaaaacagctttatcatgttagatgccagttatccattttaagtgaatcctttcctcaacatgcagcatccaactcaatatcctgatgcaaggttgtcctctcctataatcctagaccagtgtgacttattagccagaagtttagggttgtatagtcattattcacataatccgaaattgcgtaattgtaggattccacatcacatttaccgtttaaggaattcgacagcattaaagacatttcttcagaattgttcgatactcaccgttccttttcattcaatttgggatcatattttaacttccattcaatatgatgcaattaatcatgttgatgattttaaatacctattgccatctgagctagtcaagtatgcgaattgggacaacgagttcttaaaagcatatcttaataagatcttaggacttgaccatgttttttcagcttctgcaaggtcacagtgtgaggatttttctcctaaggaaaatccttattattgggggatgttattactcgtgcatctatctcaacttgccaggaggataaaaggacaaagagggtcattaagaagtaactggaaatttataggaacagatttggagctgtttggaatagcagattttgttatttttaaggttccagtaaaaacaataatccgaaatgctgtaagcttacaagcttcaaaaccgggattaagaatatggtaccgtgaccaaaacttgaccccttatctatgcgacgatgagtttattgtaagcgtcgctagttatgaatgttttatcatgattaaagacgtcttcattgagaggtataacacatgggaaatctgtgcccgcgcttggctcgaagacagtgatggagctgattatcctcctcttgatgtgttaggtgaattatacaaccagggagaccaaattattgccatgtacctggaggacggtttcaaattgattaaacacttagaacccttgtgtgtcagctgtatacaaacacatggcatctttacaccaagaaaatactggttccaatcacagatgattaagtcatattatgatgaactccatgatctcaatttgaaacttcaaatttcagacaataaggctgagtgtgcccaaaactttattaaaactatagttcaggcgaaattgactcctcaacaatactgtgaattattctccctacaaaagcattggggtcatcccgttttatacaatgatgttgcactagataaggttaaaaaacatgcgcaatcgacaaaaatcttaaaacctaaagtcatgtttgaaactttttgtgttttcaaatttatagtagcaaagaatcattatcattctcaaggatcatggtataaaaccacacatgatttgcatttgactccatatcttagacaacatattgtgtcaaattcatttccatcacaagccgaaatttatcagcatctttgggagtggtatttcgtggagcatgaacctcttttctcaactaaaataataagtgatttaagtatctttataaaagacaggctgaccgctgtgaaccaggagtgttgggacagtgtcttcgatagaagtgtattaggatataaccctcctgttagatttcaatcaaagagagtgccagagcaatttttgggtcaagcagacttttccttgaatcaaatattagagtttgctgaaaagttagagtatttggctccttcttataggaatttttccttctcattaaaagaaaaagagttgaatataggaagaacttttgggaagttaccgtatcgtgtcagaaatgtccaaacactcgcagaagccctgctagcagatggactggcaaaagcattccctagtaacatgatggttgtcactgagagggaacagaaagaagcattattacatcaggcttcttggcaccacaattcagcaagcataggggagaacgctatagtgaggggtgcaagttttgttactgatcttgagaaatacaacctcgccttccgatatgaatttacacggcatttcatagactactgtaatcgatgttatggtgtgaagaatttatttgattggatgcattttttaataccactatgttatatgcatgtcagtgacttttatagcccaccacattgtgtgacagaagataatcgaaataacccacctgattgtgctaatgcttatcattatcacttaggaggtatagagggacttcagcagaaattgtggacatgcatatcatgtgcccaaatcacccttgtggagttaaaaactaaattaaaattgaagtccagcgtcatgggtgataatcaatgtataacaactctaagtctttttccaattgatgctcccaacgattatcaagagaacgaggctgaattgaatgcggcacgagttgctgtcgaattagctattactacaggttatagtggtatatttttaaagcctgaggaaacatttgtccattcagggttcatttattttggtaaaaagcaatatctcaacggtgttcaactgccgcaatcattgaaaacaatggcaaggtgtggacccttatctgactctattttcgatgatcttcaaggttctctggccagtattggtacatcctttgagagaggaacaagcgagacacggcacatttttccgagccgttggatagcttcattccattcaatgttagcaataaatttattaaatcagaatcaccttgggtttcctctagggttcaatattgatatttcttgtttcaaaaagcctcttaccttctcggaaaaattaattgctctcataacgccccaagttttaggagggttatcatttttaaatccagaaaaattgttctaccggaacataagtgatcctctcacttcaggtctatttcaactcaagaatgcattggaatttcttgaaaaggaagaattattctatatcttgatttctaaaaaacctggtttagcagatgcctcagattttgtcatgaatccattaggcttaaatgtaccaagatcaaaggaaataataacgttccttagacaaacagttcgcgaaaatatcacgatcacgtcacaaaatagaataataaattctcttttccacataggttctgatttagaggaccaaagagtgtgtgagtggcttttatcatcaaaccctgtaatgagccgatttgctgctgacatcttttcaagaacacctagtggaaaacggcttcaagtcttaggctatctagaaggaacaagaacattactagcttctcggacaatcagtttaactacagaaggaacaatgttgatgaaattaagagaattaacgagaaaccgatggaaaagttggttttcttatattgatgcactggacgatgatttatctgagtccttggaaaagttcacatgtactgttgatgtggctaatttcttgagggcatattcatggtctgacgtcttaaaagggaaaaggctaattggtgccacactgccatgtttactagagcaatttgaggtaaagtggattaatttatctgaggatttaagggaacaatttaatctatcttcagactcaaaatcaactataaacttgttgccgtatgactgtaaggaactgcgacttgaaggaagcaatgacacagagttaaattatgtcagttgtgctcttgaccggaaagttgtccagaaacatccctctgttaatcgtctagcttggacgataggaaatcgagcaccgtatattggctcacggacagaagataagatcggttatcctcccttaagagtaaattgcccatcagcagcacttaaagaagctattgagatggtttctagattgttatgggtgactcaaggcactgcagaccgagaaaaattgcttattcctcttctcaattcaagagtaaatctggactatcagacagtgcttaactttttacctacacactactcaggcaacatagttcatagatataatgatcaatatggacaacattcctttatggcaaacaggatgagtaatacatctacacgtgcaattatatcaactaacacactgggtaaatatgctgggggaggtcaagctgctattgatagtaatataatctttcaaaatactattaatttaggagttgcagttttagatattgcattgtctcttgctaaattgtcgtcagcatcaaatgtcactttccgtttaatgttaaataagtgctgcactcggcatgtaccgtccgaatacctatattttgataaacctttagatgtggatttgaacaagtatatggacaatgagttggtttatgacaatgaccctctttgcagtgggattaaagggagattaggcagagtatctcgatcaacactctcattgagtttgaatgtcagtgacattggttcttatgactttccaactattgctgcatggacactaggagaaactatagtcggaagcattttttctgatgaatcttctcaaagtacggatccaataagctcaggttgcacaaaaactttcgtcacacatttccttgtgtatccagttgagagtatattttatgcattcggagctaacttaatagttgaaagtttaagtctaagtaggatcaaatcaattaagaacctctcagatttgacattccttatatcatccacaatcaggaatttatcacatagatcacttcggattcttcaatctactttccgacatgaattggtgctcacccgactagcccaccacataccgttaatttctttaatgttagggggctctgcaggagagaagagttcatcagatgctgttcggctatttcttacagcaagttatcagaattttatcaataatttcagttgtctgatgaagaagggtcagtcatcgctaccggtttggctttactttcctagtgaagggcaacaattaaagcctatattaaaaatcttacagagattatcagacttgttatcacctgacaaaattcaaaagcgtaaaattttggctgacacctgttgtccaattggcagcttttgggtctatccaagcaagtccacaaggactaaccattattatgcaagccttaattattggagagacaaagctaataaggttaagaatactcctttttcacacttgataaattgttcatttcctgaattttcttcacataccagttcagtctcctctaatcaacaagtgaccaattcgaagtatattgtttatccagaaaatatcactgaaataaatgcaagaaccagattaataaattatggatcaacagctctacaggggatggacaccaagatgccactctcagagcaaaatctagtcgaaaattgtcgaccatcagagggcatcagattcaaggacaatcaaaaaataacaaaacatgaccagagatgtgagagggaggaatcttcaccgcaacagatgttccctgaagataacatgcagactcctgcgcacatacatagttcctccccatttcaaatccttataaaatcactagatgcacatgaggactttgatgcctcgaagataatcttaaattctgaaataaataatcttaaccttacggagtatactcttaatacaaagttattgacaactcctaccaggacagaaattttagatacaagtccgttacaatcctctagatattcatcaacttccagggaacggtctctactatccagagaacaagcttcatatttgtacgttgattgcagtaatattccttctatctctctagacccaggttttcggagtatgtctgatcagaatcaagttcaaatgttaatcaatacctacaaacgtgatttacatgcttgttttgatagcaaccaattctgtcggtttacaggggtagtctcatcaatgcattacaagctttatgatcttttgcctccaggtaaattgaaaaaggcaatttgtttggccgaaggggaaggaagtggtgctcggttacttttgaagtggaaggaaacggattatttattcttcaacactttggctacggattcacaacaagaagccgagattttgagtggccgggtaataccgagaatgttgtataacatagacagattaagtgctttgcttgaatcaaggagactaatattgaacaacctaactatccaaattacagatattacaaatccattatggctagattctgtaatacatatttacctgaagatagtgacattcttacaatggactgcagagaccaccaaggatgaaacaagggaacagctttataaaactattgtgaatatttggacacgtacttctcctaatatcccaaaaattagcatcatcaaggtatttttattagactatgaagggactttattcttaatgaagaatgctattcagtattatgggcaagttcaactcaagaaaccatatagctcaaatgcaaaaaactcagaatggtacttgtgttgcggtaaacgaagaattcaacggctccaaattgatttctcagaccaggtgggaatttttctgatttgtaaagcaatgtcacgccaaagacaagcaattccttactggttaaaacatatagaaaagaattatcctgcttcattacacgagtttttcctaactttgggtttcccttctttagagtcatctttctgccatcgttatactattccattcagtgaaggaaaggctctttttcacaaggtccagtcttatgttcgtcaaggcaaacaacatttacattctcttatgttggattatgaaacaatcacctctactagacttgagaaatcactttatttgctcattaagggaaagataactaaatattacaatgatatattaaagttaaatctagtcatcaaggcagtagaaaaaggtaaaaattggtcacaacttgttgagatccttcctaatatgcattcagtatgcatagtgcacgtggatcatgagtgttctggatgcgagaaacggttattacttaaattggattttatcagaaatacaaagatcgcagaacaaaaattacttaacagagtaatcgggtatatcctattctttccattcggtctgtttaaatctggatcattaagggcataatttcaacagagagaacttcatttaatttacaaaaacaatctatttaagagtgagggttacattgtctaagatattgtatgagaagtaataaaataaataagaaaacgaaaagactattagacagcttattttatacaagataatcttatatcgctttaggcctcacacaagtgagaaaattacgcgcacagattaactagtgattagtgtttggtcacaccagaggtaactttttaacgttaattactcagatgttattgctcataattagcattaatattggcacattgggtgaatccttgagctttatccctaatatggtgtaagaaattaaggaaatactgagatacactagttgaattgaattatgacataccatatatcataaatataaaaaagtgtctgctgtaatctacaagcacctcttttaaatacattaggaaaagaattaagttaccgttgagatcaaaaaaaccacgtcatgttttctctgatgacaagtgataaaacttcgtagttaaatttctagaatgtcgatgtgaatgtaaattaagaaaaacaaatatataaaattaaaaaattaaaaagctttgatataagtaaaacaaaacattcttcatcttttttgtgtgtgt'"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "marburg"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "['Ala / A', 'GCU, GCC, GCA, GCG']\n",
      "['Ile / I', 'AUU, AUC, AUA']\n",
      "['Arg / R', 'CGU, CGC, CGA, CGG; AGA, AGG, AGR;']\n",
      "['Leu / L', 'CUU, CUC, CUA, CUG; UUA, UUG, UUR;']\n",
      "['Asn / N', 'AAU, AAC']\n",
      "['Lys / K', 'AAA, AAG']\n",
      "['Asp / D', 'GAU, GAC']\n",
      "['Met / M', 'AUG']\n",
      "['Phe / F', 'UUU, UUC']\n",
      "['Cys / C', 'UGU, UGC']\n",
      "['Pro / P', 'CCU, CCC, CCA, CCG']\n",
      "['Gln / Q', 'CAA, CAG']\n",
      "['Ser / S', 'UCU, UCC, UCA, UCG; AGU, AGC;']\n",
      "['Glu / E', 'GAA, GAG']\n",
      "['Thr / T', 'ACU, ACC, ACA, ACG']\n",
      "['Trp / W', 'UGG']\n",
      "['Gly / G', 'GGU, GGC, GGA, GGG']\n",
      "['Tyr / Y', 'UAU, UAC']\n",
      "['His / H', 'CAU, CAC']\n",
      "['Val / V', 'GUU, GUC, GUA, GUG']\n",
      "['STOP', 'UAA, UGA, UAG']\n"
     ]
    }
   ],
   "source": [
    "# Asn or Asp / B\tAAU, AAC; GAU, GAC\n",
    "# Gln or Glu / Z\tCAA, CAG; GAA, GAG\n",
    "# START\tAUG\n",
    "## Seperating them from the table because these duplicates was creating problems\n",
    "codons = \"\"\"\n",
    "Ala / A\tGCU, GCC, GCA, GCG\n",
    "Ile / I\tAUU, AUC, AUA\n",
    "Arg / R\tCGU, CGC, CGA, CGG; AGA, AGG, AGR;\n",
    "Leu / L\tCUU, CUC, CUA, CUG; UUA, UUG, UUR;\n",
    "Asn / N\tAAU, AAC\n",
    "Lys / K\tAAA, AAG\n",
    "Asp / D\tGAU, GAC\n",
    "Met / M\tAUG\n",
    "Phe / F\tUUU, UUC\n",
    "Cys / C\tUGU, UGC\n",
    "Pro / P\tCCU, CCC, CCA, CCG\n",
    "Gln / Q\tCAA, CAG\n",
    "Ser / S\tUCU, UCC, UCA, UCG; AGU, AGC;\n",
    "Glu / E\tGAA, GAG\n",
    "Thr / T\tACU, ACC, ACA, ACG\n",
    "Trp / W\tUGG\n",
    "Gly / G\tGGU, GGC, GGA, GGG\n",
    "Tyr / Y\tUAU, UAC\n",
    "His / H\tCAU, CAC\n",
    "Val / V\tGUU, GUC, GUA, GUG\n",
    "STOP\tUAA, UGA, UAG\"\"\".strip()\n",
    "\n",
    "for t in codons.split('\\n'):\n",
    "    print(t.split('\\t'))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "{'gct': 'A',\n",
       " 'gcc': 'A',\n",
       " 'gca': 'A',\n",
       " 'gcg': 'A',\n",
       " 'att': 'I',\n",
       " 'atc': 'I',\n",
       " 'ata': 'I',\n",
       " 'cgt': 'R',\n",
       " 'cgc': 'R',\n",
       " 'cga': 'R',\n",
       " 'cgg': 'R',\n",
       " 'aga': 'R',\n",
       " 'agg': 'R',\n",
       " 'agr': 'R',\n",
       " 'ctt': 'L',\n",
       " 'ctc': 'L',\n",
       " 'cta': 'L',\n",
       " 'ctg': 'L',\n",
       " 'tta': 'L',\n",
       " 'ttg': 'L',\n",
       " 'ttr': 'L',\n",
       " 'aat': 'N',\n",
       " 'aac': 'N',\n",
       " 'aaa': 'K',\n",
       " 'aag': 'K',\n",
       " 'gat': 'D',\n",
       " 'gac': 'D',\n",
       " 'atg': 'M',\n",
       " 'ttt': 'F',\n",
       " 'ttc': 'F',\n",
       " 'tgt': 'C',\n",
       " 'tgc': 'C',\n",
       " 'cct': 'P',\n",
       " 'ccc': 'P',\n",
       " 'cca': 'P',\n",
       " 'ccg': 'P',\n",
       " 'caa': 'Q',\n",
       " 'cag': 'Q',\n",
       " 'tct': 'S',\n",
       " 'tcc': 'S',\n",
       " 'tca': 'S',\n",
       " 'tcg': 'S',\n",
       " 'agt': 'S',\n",
       " 'agc': 'S',\n",
       " 'gaa': 'E',\n",
       " 'gag': 'E',\n",
       " 'act': 'T',\n",
       " 'acc': 'T',\n",
       " 'aca': 'T',\n",
       " 'acg': 'T',\n",
       " 'tgg': 'W',\n",
       " 'ggt': 'G',\n",
       " 'ggc': 'G',\n",
       " 'gga': 'G',\n",
       " 'ggg': 'G',\n",
       " 'tat': 'Y',\n",
       " 'tac': 'Y',\n",
       " 'cat': 'H',\n",
       " 'cac': 'H',\n",
       " 'gtt': 'V',\n",
       " 'gtc': 'V',\n",
       " 'gta': 'V',\n",
       " 'gtg': 'V',\n",
       " 'taa': '*',\n",
       " 'tga': '*',\n",
       " 'tag': '*'}"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "##decoder dictionary\n",
    "dec = {}  \n",
    "\n",
    "for t in codons.split('\\n'):\n",
    "    k, v = t.split('\\t')\n",
    "    if '/' in k:\n",
    "        k = k.split('/')[-1].strip()\n",
    "    k = k.replace(\"STOP\", \"*\")\n",
    "    v = v.replace(\",\", \"\").replace(\";\", \"\").lower().replace(\"u\", \"t\").split(\" \")\n",
    "    for vv in v:\n",
    "        if vv in dec:\n",
    "            print(\"duplicate\", vv)\n",
    "        dec[vv] = k\n",
    "dec"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "21"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(set(dec.values()))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'DGY*MSIKQVL*NTRGFTGC*TY*ILHRII*FFSIHVISLAK*GKQLYHVRCQLSILSESFPQHAASNSIS*CKVVLSYNPRPV*LISQKFRVV*SLFT*SEIA*L*DSTSHLPFKEFDSIKDISSELFDTHRSFSFNLGSYFNFHSI*CN*SC**F*IPIAI*ASQVCELGQRVLKSIS**DLRT*PCFFSFCKVTV*GFFS*GKSLLLGDVITRASISTCQEDKRTKRVIKK*LEIYRNRFGAVWNSRFCYF*GSSKNNNPKCCKLTSFKTGIKNMVP*PKLDPLSMRR*VYCKRR*L*MFYHD*RRLH*EV*HMGNLCPRLARRQ*WS*LSSS*CVR*IIQPGRPNYCHVPGGRFQID*TLRTLVCQLYTNTWHLYTKKILVPITDD*VIL**TP*SQFETSNFRQ*G*VCPKLY*NYSSGEIDSSTIL*IILPTKALGSSRFIQ*CCTR*G*KTCAIDKNLKT*SHV*NFLCFQIYSSKESLSFSRIMV*NHT*FAFDSIS*TTYCVKFISITSRNLSASLGVVFRGA*TSFLN*NNK*FKYLYKRQADRCEPGVLGQCLR*KCIRI*PSC*ISIKESARAIFGSSRLFLESNIRVC*KVRVFGSFL*EFFLLIKRKRVEYRKNFWEVTVSCQKCPNTRRSPASRWTGKSIP**HDGCH*EGTERSIITSGFLAPQFSKHRGERYSEGCKFCY*S*EIQPRLPI*IYTAFHRLL*SMLWCEEFI*LDAFFNTTMLYACQ*LL*PTTLCDRR*SK*PT*LC*CLSLSLRRYRGTSAEIVDMHIMCPNHPCGVKN*IKIEVQRHG**SMYNNSKSFSN*CSQRLSRERG*IECGTSCCRISYYYRL*WYIFKA*GNICPFRVHLFW*KAISQRCSTAAIIENNGKVWTLI*LYFR*SSRFSGQYWYIL*ERNKRDTAHFSEPLDSFIPFNVSNKFIKSESPWVSSRVQY*YFLFQKASYLLGKINCSHNAPSFRRVIIFKSRKIVLPEHK*SSHFRSISTQECIGIS*KGRIILYLDF*KTWFSRCLRFCHESIRLKCTKIKGNNNVP*TNSSRKYHDHVTK*NNKFSFPHRF*FRGPKSV*VAFIIKPCNEPICC*HLFKNT*WKTASSLRLSRRNKNITSFSDNQFNYRRNNVDEIKRINEKPMEKLVFLY*CTGR*FI*VLGKVHMYC*CG*FLEGIFMV*RLKREKANWCHTAMFTRAI*GKVD*FI*GFKGTI*SIFRLKINYKLVAV*L*GTAT*RKQ*HRVKLCQLCS*PESCPETSLC*SSSLDDRKSSTVYWLTDRR*DRLSSLKSKLPISST*RSY*DGF*IVMGDSRHCRPRKIAYSSSQFKSKSGLSDSA*LFTYTLLRQHSS*I**SIWTTFLYGKQDE*YIYTCNYIN*HTG*ICWGRSSCY***YNLSKYY*FRSCSFRYCIVSC*IVVSIKCHFPFNVK*VLHSACTVRIPIF**TFRCGFEQVYGQ*VGL*Q*PSLQWD*REIRQSISINTLIEFECQ*HWFL*LSNYCCMDTRRNYSRKHFF**IFSKYGSNKLRLHKNFRHTFPCVSS*EYILCIRS*LNS*KFKSK*DQIN*EPLRFDIPYIIHNQEFIT*ITSDSSIYFPT*IGAHPTSPPHTVNFFNVRGLCRREEFIRCCSAISYSKLSEFYQ*FQLSDEEGSVIATGLALLS**RATIKAYIKNLTEIIRLVIT*QNSKA*NFG*HLLSNWQLLGLSKQVHKD*PLLCKP*LLERQS**G*EYSFFTLDKLFIS*IFFTYQFSLL*STSDQFEVYCLSRKYH*NKCKNQINKLWINSSTGDGHQDATLRAKSSRKLSTIRGHQIQGQSKNNKT*PEM*EGGIFTATDVP*R*HADSCAHT*FLPISNPYKITRCT*GL*CLEDNLKF*NK*S*PYGVYS*YKVIDNSYQDRNFRYKSVTIL*IFINFQGTVSTIQRTSFIFVR*LQ*YSFYLSRPRFSEYV*SESSSNVNQYLQT*FTCLF**QPILSVYRGSLINALQAL*SFASR*IEKGNLFGRRGRKWCSVTFEVEGNGLFILQHFGYGFTTRSRDFEWPGNTENVV*HRQIKCFA*IKETNIEQPNYPNYRYYKSIMARFCNTYLPEDSDILTMDCRDHQG*NKGTAL*NYCEYLDTYFS*YPKN*HHQGIFIRL*RDFILNEECYSVLWASSTQETI*LKCKKLRMVLVLR*TKNSTAPN*FLRPGGNFSDL*SNVTPKTSNSLLVKTYRKELSCFITRVFPNFGFPFFRVIFLPSLYYSIQ*RKGSFSQGPVLCSSRQTTFTFSYVGL*NNHLY*T*EITLFAH*GKDN*ILQ*YIKVKSSHQGSRKR*KLVTTC*DPS*YAFSMHSARGS*VFWMRETVIT*IGFYQKYKDRRTKIT*QSNRVYPILSIRSV*IWIIKGIISTERTSFNLQKQSI*E*GLHCLRYCMRSNKINKKTKRLLDSLFYTR*SYIALGLTQVRKLRAQIN**LVFGHTRGNFLTLITQMLLLIISINIGTLGESLSFIPNMV*EIKEILRYTS*IEL*HTIYHKYKKVSAVIYKHLF*IH*EKN*VTVEIKKTTSCFL**QVIKLRS*ISRMSM*M*IKKNKYIKLKN*KALI*VKQNILHLFCVCMDIKCPSSKCCRIPGVSQAAKLTKFYIGLYNSFRYTLYL*QSEENSFIMLDASYPF*VNPFLNMQHPTQYPDARLSSPIILDQCDLLARSLGLYSHYSHNPKLRNCRIPHHIYRLRNSTALKTFLQNCSILTVPFHSIWDHILTSIQYDAINHVDDFKYLLPSELVKYANWDNEFLKAYLNKILGLDHVFSASARSQCEDFSPKENPYYWGMLLLVHLSQLARRIKGQRGSLRSNWKFIGTDLELFGIADFVIFKVPVKTIIRNAVSLQASKPGLRIWYRDQNLTPYLCDDEFIVSVASYECFIMIKDVFIERYNTWEICARAWLEDSDGADYPPLDVLGELYNQGDQIIAMYLEDGFKLIKHLEPLCVSCIQTHGIFTPRKYWFQSQMIKSYYDELHDLNLKLQISDNKAECAQNFIKTIVQAKLTPQQYCELFSLQKHWGHPVLYNDVALDKVKKHAQSTKILKPKVMFETFCVFKFIVAKNHYHSQGSWYKTTHDLHLTPYLRQHIVSNSFPSQAEIYQHLWEWYFVEHEPLFSTKIISDLSIFIKDRLTAVNQECWDSVFDRSVLGYNPPVRFQSKRVPEQFLGQADFSLNQILEFAEKLEYLAPSYRNFSFSLKEKELNIGRTFGKLPYRVRNVQTLAEALLADGLAKAFPSNMMVVTEREQKEALLHQASWHHNSASIGENAIVRGASFVTDLEKYNLAFRYEFTRHFIDYCNRCYGVKNLFDWMHFLIPLCYMHVSDFYSPPHCVTEDNRNNPPDCANAYHYHLGGIEGLQQKLWTCISCAQITLVELKTKLKLKSSVMGDNQCITTLSLFPIDAPNDYQENEAELNAARVAVELAITTGYSGIFLKPEETFVHSGFIYFGKKQYLNGVQLPQSLKTMARCGPLSDSIFDDLQGSLASIGTSFERGTSETRHIFPSRWIASFHSMLAINLLNQNHLGFPLGFNIDISCFKKPLTFSEKLIALITPQVLGGLSFLNPEKLFYRNISDPLTSGLFQLKNALEFLEKEELFYILISKKPGLADASDFVMNPLGLNVPRSKEIITFLRQTVRENITITSQNRIINSLFHIGSDLEDQRVCEWLLSSNPVMSRFAADIFSRTPSGKRLQVLGYLEGTRTLLASRTISLTTEGTMLMKLRELTRNRWKSWFSYIDALDDDLSESLEKFTCTVDVANFLRAYSWSDVLKGKRLIGATLPCLLEQFEVKWINLSEDLREQFNLSSDSKSTINLLPYDCKELRLEGSNDTELNYVSCALDRKVVQKHPSVNRLAWTIGNRAPYIGSRTEDKIGYPPLRVNCPSAALKEAIEMVSRLLWVTQGTADREKLLIPLLNSRVNLDYQTVLNFLPTHYSGNIVHRYNDQYGQHSFMANRMSNTSTRAIISTNTLGKYAGGGQAAIDSNIIFQNTINLGVAVLDIALSLAKLSSASNVTFRLMLNKCCTRHVPSEYLYFDKPLDVDLNKYMDNELVYDNDPLCSGIKGRLGRVSRSTLSLSLNVSDIGSYDFPTIAAWTLGETIVGSIFSDESSQSTDPISSGCTKTFVTHFLVYPVESIFYAFGANLIVESLSLSRIKSIKNLSDLTFLISSTIRNLSHRSLRILQSTFRHELVLTRLAHHIPLISLMLGGSAGEKSSSDAVRLFLTASYQNFINNFSCLMKKGQSSLPVWLYFPSEGQQLKPILKILQRLSDLLSPDKIQKRKILADTCCPIGSFWVYPSKSTRTNHYYASLNYWRDKANKVKNTPFSHLINCSFPEFSSHTSSVSSNQQVTNSKYIVYPENITEINARTRLINYGSTALQGMDTKMPLSEQNLVENCRPSEGIRFKDNQKITKHDQRCEREESSPQQMFPEDNMQTPAHIHSSSPFQILIKSLDAHEDFDASKIILNSEINNLNLTEYTLNTKLLTTPTRTEILDTSPLQSSRYSSTSRERSLLSREQASYLYVDCSNIPSISLDPGFRSMSDQNQVQMLINTYKRDLHACFDSNQFCRFTGVVSSMHYKLYDLLPPGKLKKAICLAEGEGSGARLLLKWKETDYLFFNTLATDSQQEAEILSGRVIPRMLYNIDRLSALLESRRLILNNLTIQITDITNPLWLDSVIHIYLKIVTFLQWTAETTKDETREQLYKTIVNIWTRTSPNIPKISIIKVFLLDYEGTLFLMKNAIQYYGQVQLKKPYSSNAKNSEWYLCCGKRRIQRLQIDFSDQVGIFLICKAMSRQRQAIPYWLKHIEKNYPASLHEFFLTLGFPSLESSFCHRYTIPFSEGKALFHKVQSYVRQGKQHLHSLMLDYETITSTRLEKSLYLLIKGKITKYYNDILKLNLVIKAVEKGKNWSQLVEILPNMHSVCIVHVDHECSGCEKRLLLKLDFIRNTKIAEQKLLNRVIGYILFFPFGLFKSGSLRA*FQQRELHLIYKNNLFKSEGYIV*DIV*EVIK*IRKRKDY*TAYFIQDNLISL*ASHK*ENYAHRLTSD*CLVTPEVTF*R*LLRCYCS*LALILAHWVNP*ALSLIWCKKLRKY*DTLVELNYDIPYIINIKKCLL*STSTSFKYIRKRIKLPLRSKKPRHVFSDDK**NFVVKFLECRCECKLRKTNI*N*KIKKL*YK*NKTFFIFFVCWILNVHQASVVEYQGFHRLLNLLNFT*DYIILFDTRYIFSKVRKTALSC*MPVIHFK*ILSSTCSIQLNILMQGCPLL*S*TSVTY*PEV*GCIVIIHIIRNCVIVGFHITFTV*GIRQH*RHFFRIVRYSPFLFIQFGIIF*LPFNMMQLIMLMILNTYCHLS*SSMRIGTTSS*KHILIRS*DLTMFFQLLQGHSVRIFLLRKILIIGGCYYSCIYLNLPGG*KDKEGH*EVTGNL*EQIWSCLE*QILLFLRFQ*KQ*SEML*AYKLQNRD*EYGTVTKT*PLIYATMSLL*ASLVMNVLS*LKTSSLRGITHGKSVPALGSKTVMELIILLLMC*VNYTTRETKLLPCTWRTVSN*LNT*NPCVSAVYKHMASLHQENTGSNHR*LSHIMMNSMISI*NFKFQTIRLSVPKTLLKL*FRRN*LLNNTVNYSPYKSIGVIPFYTMMLH*IRLKNMRNRQKS*NLKSCLKLFVFSNL**QRIIIILKDHGIKPHMICI*LHILDNILCQIHFHHKPKFISIFGSGISWSMNLFSQLK**VI*VSL*KTG*PL*TRSVGTVSSIEVY*DITLLLDFNQRECQSNFWVKQTFP*IKY*SLLKS*SIWLLLIGIFPSH*KKKS*I*EELLGSYRIVSEMSKHSQKPC*QMDWQKHSLVT*WLSLRGNRKKHYYIRLLGTTIQQA*GRTL**GVQVLLLILRNTTSPSDMNLHGIS*TTVIDVMV*RIYLIGCIF*YHYVICMSVTFIAHHIV*QKIIEITHLIVLMLIIIT*EV*RDFSRNCGHAYHVPKSPLWS*KLN*N*SPASWVIINV*QL*VFFQLMLPTIIKRTRLN*MRHELLSN*LLLQVIVVYF*SLRKHLSIQGSFILVKSNISTVFNCRNH*KQWQGVDPYLTLFSMIFKVLWPVLVHPLREEQARHGTFFRAVG*LHSIQC*Q*IY*IRITLGFL*GSILIFLVSKSLLPSRKN*LLS*RPKF*EGYHF*IQKNCSTGT*VILSLQVYFNSRMHWNFLKRKNYSIS*FLKNLV*QMPQILS*IH*A*MYQDQRK**RSLDKQFAKISRSRHKIE**ILFST*VLI*RTKECVSGFYHQTL**ADLLLTSFQEHLVENGFKS*AI*KEQEHY*LLGQSV*LQKEQC**N*EN*RETDGKVGFLILMHWTMIYLSPWKSSHVLLMWLIS*GHIHGLTS*KGKG*LVPHCHVY*SNLR*SGLIYLRI*GNNLIYLQTQNQL*TCCRMTVRNCDLKEAMTQS*IMSVVLLTGKLSRNIPLLIV*LGR*EIEHRILAHGQKIRSVILP*E*IAHQQHLKKLLRWFLDCYG*LKALQTEKNCLFLFSIQE*IWTIRQCLTFYLHTTQAT*FIDIMINMDNIPLWQTG*VIHLHVQLYQLTHWVNMLGEVKLLLIVI*SFKILLI*ELQF*ILHCLLLNCRQHQMSLSV*C*ISAALGMYRPNTYILINL*MWI*TSIWTMSWFMTMTLFAVGLKGD*AEYLDQHSH*V*MSVTLVLMTFQLLLHGH*EKL*SEAFFLMNLLKVRIQ*AQVAQKLSSHISLCIQLRVYFMHSELT**LKV*V*VGSNQLRTSQI*HSLYHPQSGIYHIDHFGFFNLLSDMNWCSPD*PTTYR*FL*C*GALQERRVHQMLFGYFLQQVIRILSIISVV**RRVSHRYRFGFTFLVKGNN*SLY*KSYRDYQTCYHLTKFKSVKFWLTPVVQLAAFGSIQASPQGLTIIMQALIIGETKLIRLRILLFHT**IVHFLNFLHIPVQSPLINK*PIRSILFIQKISLK*MQEPD**IMDQQLYRGWTPRCHSQSKI*SKIVDHQRASDSRTIKK*QNMTRDVRGRNLHRNRCSLKITCRLLRTYIVPPHFKSL*NH*MHMRTLMPRR*S*ILK*IILTLRSILLIQSY*QLLPGQKF*IQVRYNPLDIHQLPGNGLYYPENKLHICTLIAVIFLLSL*TQVFGVCLIRIKFKC*SIPTNVIYMLVLIATNSVGLQG*SHQCITSFMIFCLQVN*KRQFVWPKGKEVVLGYF*SGRKRIIYSSTLWLRIHNKKPRF*VAG*YRECCIT*TD*VLCLNQGD*Y*TT*LSKLQILQIHYG*IL*YIFT*R**HSYNGLQRPPRMKQGNSFIKLL*IFGHVLLLISQKLASSRYFY*TMKGLYS**RMLFSIMGKFNSRNHIAQMQKTQNGTCVAVNEEFNGSKLISQTRWEFF*FVKQCHAKDKQFLTG*NI*KRIILLHYTSFS*LWVSLL*SHLSAIVILFHSVKERLFFTRSSLMFVKANNIYILLCWIMKQSPLLDLRNHFICSLRER*LNITMIY*S*I*SSRQ*KKVKIGHNLLRSFLICIQYA*CTWIMSVLDARNGYYLNWILSEIQRSQNKNYLTE*SGISYSFHSVCLNLDH*GHNFNRENFI*FTKTIYLRVRVTLSKILYEK**NK*ENEKTIRQLILYKIILYRFRPHTSEKITRTD*LVISVWSHQR*LFNVNYSDVIAHN*H*YWHIG*ILELYP*YGVRN*GNTEIH*LN*IMTYHIS*I*KSVCCNLQAPLLNTLGKELSYR*DQKNHVMFSLMTSDKTS*LNF*NVDVNVN*EKQIYKIKKLKSFDISKTKHSSSFLCV'"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "def translation(x, isProtein = False):\n",
    "    aa = []\n",
    "    for i in range(0, len(x)-2, 3):\n",
    "        aa.append(dec[x[i:i+3]])\n",
    "    aa = ''.join(aa)\n",
    "    if isProtein:\n",
    "        if aa[0] != \"M\" or aa[-1] != \"*\":\n",
    "            print(\"BAD PROTEIN!\")\n",
    "            return None\n",
    "        aa = aa[:-1]\n",
    "    return aa\n",
    "\n",
    "aa = translation(marburg[0:]) + translation(marburg[1:]) + translation(marburg[2:])\n",
    "\n",
    "##Refer to reading of codons for the above algorithm\n",
    "\n",
    "aa"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['DGY',\n",
       " 'MSIKQVL',\n",
       " 'NTRGFTGC',\n",
       " 'TY',\n",
       " 'ILHRII',\n",
       " 'FFSIHVISLAK',\n",
       " 'GKQLYHVRCQLSILSESFPQHAASNSIS',\n",
       " 'CKVVLSYNPRPV',\n",
       " 'LISQKFRVV',\n",
       " 'SLFT',\n",
       " 'SEIA',\n",
       " 'L',\n",
       " 'DSTSHLPFKEFDSIKDISSELFDTHRSFSFNLGSYFNFHSI',\n",
       " 'CN',\n",
       " 'SC',\n",
       " '',\n",
       " 'F',\n",
       " 'IPIAI',\n",
       " 'ASQVCELGQRVLKSIS',\n",
       " '',\n",
       " 'DLRT',\n",
       " 'PCFFSFCKVTV',\n",
       " 'GFFS',\n",
       " 'GKSLLLGDVITRASISTCQEDKRTKRVIKK',\n",
       " 'LEIYRNRFGAVWNSRFCYF',\n",
       " 'GSSKNNNPKCCKLTSFKTGIKNMVP',\n",
       " 'PKLDPLSMRR',\n",
       " 'VYCKRR',\n",
       " 'L',\n",
       " 'MFYHD',\n",
       " 'RRLH',\n",
       " 'EV',\n",
       " 'HMGNLCPRLARRQ',\n",
       " 'WS',\n",
       " 'LSSS',\n",
       " 'CVR',\n",
       " 'IIQPGRPNYCHVPGGRFQID',\n",
       " 'TLRTLVCQLYTNTWHLYTKKILVPITDD',\n",
       " 'VIL',\n",
       " '',\n",
       " 'TP',\n",
       " 'SQFETSNFRQ',\n",
       " 'G',\n",
       " 'VCPKLY',\n",
       " 'NYSSGEIDSSTIL',\n",
       " 'IILPTKALGSSRFIQ',\n",
       " 'CCTR',\n",
       " 'G',\n",
       " 'KTCAIDKNLKT',\n",
       " 'SHV',\n",
       " 'NFLCFQIYSSKESLSFSRIMV',\n",
       " 'NHT',\n",
       " 'FAFDSIS',\n",
       " 'TTYCVKFISITSRNLSASLGVVFRGA',\n",
       " 'TSFLN',\n",
       " 'NNK',\n",
       " 'FKYLYKRQADRCEPGVLGQCLR',\n",
       " 'KCIRI',\n",
       " 'PSC',\n",
       " 'ISIKESARAIFGSSRLFLESNIRVC',\n",
       " 'KVRVFGSFL',\n",
       " 'EFFLLIKRKRVEYRKNFWEVTVSCQKCPNTRRSPASRWTGKSIP',\n",
       " '',\n",
       " 'HDGCH',\n",
       " 'EGTERSIITSGFLAPQFSKHRGERYSEGCKFCY',\n",
       " 'S',\n",
       " 'EIQPRLPI',\n",
       " 'IYTAFHRLL',\n",
       " 'SMLWCEEFI',\n",
       " 'LDAFFNTTMLYACQ',\n",
       " 'LL',\n",
       " 'PTTLCDRR',\n",
       " 'SK',\n",
       " 'PT',\n",
       " 'LC',\n",
       " 'CLSLSLRRYRGTSAEIVDMHIMCPNHPCGVKN',\n",
       " 'IKIEVQRHG',\n",
       " '',\n",
       " 'SMYNNSKSFSN',\n",
       " 'CSQRLSRERG',\n",
       " 'IECGTSCCRISYYYRL',\n",
       " 'WYIFKA',\n",
       " 'GNICPFRVHLFW',\n",
       " 'KAISQRCSTAAIIENNGKVWTLI',\n",
       " 'LYFR',\n",
       " 'SSRFSGQYWYIL',\n",
       " 'ERNKRDTAHFSEPLDSFIPFNVSNKFIKSESPWVSSRVQY',\n",
       " 'YFLFQKASYLLGKINCSHNAPSFRRVIIFKSRKIVLPEHK',\n",
       " 'SSHFRSISTQECIGIS',\n",
       " 'KGRIILYLDF',\n",
       " 'KTWFSRCLRFCHESIRLKCTKIKGNNNVP',\n",
       " 'TNSSRKYHDHVTK',\n",
       " 'NNKFSFPHRF',\n",
       " 'FRGPKSV',\n",
       " 'VAFIIKPCNEPICC',\n",
       " 'HLFKNT',\n",
       " 'WKTASSLRLSRRNKNITSFSDNQFNYRRNNVDEIKRINEKPMEKLVFLY',\n",
       " 'CTGR',\n",
       " 'FI',\n",
       " 'VLGKVHMYC',\n",
       " 'CG',\n",
       " 'FLEGIFMV',\n",
       " 'RLKREKANWCHTAMFTRAI',\n",
       " 'GKVD',\n",
       " 'FI',\n",
       " 'GFKGTI',\n",
       " 'SIFRLKINYKLVAV',\n",
       " 'L',\n",
       " 'GTAT',\n",
       " 'RKQ',\n",
       " 'HRVKLCQLCS',\n",
       " 'PESCPETSLC',\n",
       " 'SSSLDDRKSSTVYWLTDRR',\n",
       " 'DRLSSLKSKLPISST',\n",
       " 'RSY',\n",
       " 'DGF',\n",
       " 'IVMGDSRHCRPRKIAYSSSQFKSKSGLSDSA',\n",
       " 'LFTYTLLRQHSS',\n",
       " 'I',\n",
       " '',\n",
       " 'SIWTTFLYGKQDE',\n",
       " 'YIYTCNYIN',\n",
       " 'HTG',\n",
       " 'ICWGRSSCY',\n",
       " '',\n",
       " '',\n",
       " 'YNLSKYY',\n",
       " 'FRSCSFRYCIVSC',\n",
       " 'IVVSIKCHFPFNVK',\n",
       " 'VLHSACTVRIPIF',\n",
       " '',\n",
       " 'TFRCGFEQVYGQ',\n",
       " 'VGL',\n",
       " 'Q',\n",
       " 'PSLQWD',\n",
       " 'REIRQSISINTLIEFECQ',\n",
       " 'HWFL',\n",
       " 'LSNYCCMDTRRNYSRKHFF',\n",
       " '',\n",
       " 'IFSKYGSNKLRLHKNFRHTFPCVSS',\n",
       " 'EYILCIRS',\n",
       " 'LNS',\n",
       " 'KFKSK',\n",
       " 'DQIN',\n",
       " 'EPLRFDIPYIIHNQEFIT',\n",
       " 'ITSDSSIYFPT',\n",
       " 'IGAHPTSPPHTVNFFNVRGLCRREEFIRCCSAISYSKLSEFYQ',\n",
       " 'FQLSDEEGSVIATGLALLS',\n",
       " '',\n",
       " 'RATIKAYIKNLTEIIRLVIT',\n",
       " 'QNSKA',\n",
       " 'NFG',\n",
       " 'HLLSNWQLLGLSKQVHKD',\n",
       " 'PLLCKP',\n",
       " 'LLERQS',\n",
       " '',\n",
       " 'G',\n",
       " 'EYSFFTLDKLFIS',\n",
       " 'IFFTYQFSLL',\n",
       " 'STSDQFEVYCLSRKYH',\n",
       " 'NKCKNQINKLWINSSTGDGHQDATLRAKSSRKLSTIRGHQIQGQSKNNKT',\n",
       " 'PEM',\n",
       " 'EGGIFTATDVP',\n",
       " 'R',\n",
       " 'HADSCAHT',\n",
       " 'FLPISNPYKITRCT',\n",
       " 'GL',\n",
       " 'CLEDNLKF',\n",
       " 'NK',\n",
       " 'S',\n",
       " 'PYGVYS',\n",
       " 'YKVIDNSYQDRNFRYKSVTIL',\n",
       " 'IFINFQGTVSTIQRTSFIFVR',\n",
       " 'LQ',\n",
       " 'YSFYLSRPRFSEYV',\n",
       " 'SESSSNVNQYLQT',\n",
       " 'FTCLF',\n",
       " '',\n",
       " 'QPILSVYRGSLINALQAL',\n",
       " 'SFASR',\n",
       " 'IEKGNLFGRRGRKWCSVTFEVEGNGLFILQHFGYGFTTRSRDFEWPGNTENVV',\n",
       " 'HRQIKCFA',\n",
       " 'IKETNIEQPNYPNYRYYKSIMARFCNTYLPEDSDILTMDCRDHQG',\n",
       " 'NKGTAL',\n",
       " 'NYCEYLDTYFS',\n",
       " 'YPKN',\n",
       " 'HHQGIFIRL',\n",
       " 'RDFILNEECYSVLWASSTQETI',\n",
       " 'LKCKKLRMVLVLR',\n",
       " 'TKNSTAPN',\n",
       " 'FLRPGGNFSDL',\n",
       " 'SNVTPKTSNSLLVKTYRKELSCFITRVFPNFGFPFFRVIFLPSLYYSIQ',\n",
       " 'RKGSFSQGPVLCSSRQTTFTFSYVGL',\n",
       " 'NNHLY',\n",
       " 'T',\n",
       " 'EITLFAH',\n",
       " 'GKDN',\n",
       " 'ILQ',\n",
       " 'YIKVKSSHQGSRKR',\n",
       " 'KLVTTC',\n",
       " 'DPS',\n",
       " 'YAFSMHSARGS',\n",
       " 'VFWMRETVIT',\n",
       " 'IGFYQKYKDRRTKIT',\n",
       " 'QSNRVYPILSIRSV',\n",
       " 'IWIIKGIISTERTSFNLQKQSI',\n",
       " 'E',\n",
       " 'GLHCLRYCMRSNKINKKTKRLLDSLFYTR',\n",
       " 'SYIALGLTQVRKLRAQIN',\n",
       " '',\n",
       " 'LVFGHTRGNFLTLITQMLLLIISINIGTLGESLSFIPNMV',\n",
       " 'EIKEILRYTS',\n",
       " 'IEL',\n",
       " 'HTIYHKYKKVSAVIYKHLF',\n",
       " 'IH',\n",
       " 'EKN',\n",
       " 'VTVEIKKTTSCFL',\n",
       " '',\n",
       " 'QVIKLRS',\n",
       " 'ISRMSM',\n",
       " 'M',\n",
       " 'IKKNKYIKLKN',\n",
       " 'KALI',\n",
       " 'VKQNILHLFCVCMDIKCPSSKCCRIPGVSQAAKLTKFYIGLYNSFRYTLYL',\n",
       " 'QSEENSFIMLDASYPF',\n",
       " 'VNPFLNMQHPTQYPDARLSSPIILDQCDLLARSLGLYSHYSHNPKLRNCRIPHHIYRLRNSTALKTFLQNCSILTVPFHSIWDHILTSIQYDAINHVDDFKYLLPSELVKYANWDNEFLKAYLNKILGLDHVFSASARSQCEDFSPKENPYYWGMLLLVHLSQLARRIKGQRGSLRSNWKFIGTDLELFGIADFVIFKVPVKTIIRNAVSLQASKPGLRIWYRDQNLTPYLCDDEFIVSVASYECFIMIKDVFIERYNTWEICARAWLEDSDGADYPPLDVLGELYNQGDQIIAMYLEDGFKLIKHLEPLCVSCIQTHGIFTPRKYWFQSQMIKSYYDELHDLNLKLQISDNKAECAQNFIKTIVQAKLTPQQYCELFSLQKHWGHPVLYNDVALDKVKKHAQSTKILKPKVMFETFCVFKFIVAKNHYHSQGSWYKTTHDLHLTPYLRQHIVSNSFPSQAEIYQHLWEWYFVEHEPLFSTKIISDLSIFIKDRLTAVNQECWDSVFDRSVLGYNPPVRFQSKRVPEQFLGQADFSLNQILEFAEKLEYLAPSYRNFSFSLKEKELNIGRTFGKLPYRVRNVQTLAEALLADGLAKAFPSNMMVVTEREQKEALLHQASWHHNSASIGENAIVRGASFVTDLEKYNLAFRYEFTRHFIDYCNRCYGVKNLFDWMHFLIPLCYMHVSDFYSPPHCVTEDNRNNPPDCANAYHYHLGGIEGLQQKLWTCISCAQITLVELKTKLKLKSSVMGDNQCITTLSLFPIDAPNDYQENEAELNAARVAVELAITTGYSGIFLKPEETFVHSGFIYFGKKQYLNGVQLPQSLKTMARCGPLSDSIFDDLQGSLASIGTSFERGTSETRHIFPSRWIASFHSMLAINLLNQNHLGFPLGFNIDISCFKKPLTFSEKLIALITPQVLGGLSFLNPEKLFYRNISDPLTSGLFQLKNALEFLEKEELFYILISKKPGLADASDFVMNPLGLNVPRSKEIITFLRQTVRENITITSQNRIINSLFHIGSDLEDQRVCEWLLSSNPVMSRFAADIFSRTPSGKRLQVLGYLEGTRTLLASRTISLTTEGTMLMKLRELTRNRWKSWFSYIDALDDDLSESLEKFTCTVDVANFLRAYSWSDVLKGKRLIGATLPCLLEQFEVKWINLSEDLREQFNLSSDSKSTINLLPYDCKELRLEGSNDTELNYVSCALDRKVVQKHPSVNRLAWTIGNRAPYIGSRTEDKIGYPPLRVNCPSAALKEAIEMVSRLLWVTQGTADREKLLIPLLNSRVNLDYQTVLNFLPTHYSGNIVHRYNDQYGQHSFMANRMSNTSTRAIISTNTLGKYAGGGQAAIDSNIIFQNTINLGVAVLDIALSLAKLSSASNVTFRLMLNKCCTRHVPSEYLYFDKPLDVDLNKYMDNELVYDNDPLCSGIKGRLGRVSRSTLSLSLNVSDIGSYDFPTIAAWTLGETIVGSIFSDESSQSTDPISSGCTKTFVTHFLVYPVESIFYAFGANLIVESLSLSRIKSIKNLSDLTFLISSTIRNLSHRSLRILQSTFRHELVLTRLAHHIPLISLMLGGSAGEKSSSDAVRLFLTASYQNFINNFSCLMKKGQSSLPVWLYFPSEGQQLKPILKILQRLSDLLSPDKIQKRKILADTCCPIGSFWVYPSKSTRTNHYYASLNYWRDKANKVKNTPFSHLINCSFPEFSSHTSSVSSNQQVTNSKYIVYPENITEINARTRLINYGSTALQGMDTKMPLSEQNLVENCRPSEGIRFKDNQKITKHDQRCEREESSPQQMFPEDNMQTPAHIHSSSPFQILIKSLDAHEDFDASKIILNSEINNLNLTEYTLNTKLLTTPTRTEILDTSPLQSSRYSSTSRERSLLSREQASYLYVDCSNIPSISLDPGFRSMSDQNQVQMLINTYKRDLHACFDSNQFCRFTGVVSSMHYKLYDLLPPGKLKKAICLAEGEGSGARLLLKWKETDYLFFNTLATDSQQEAEILSGRVIPRMLYNIDRLSALLESRRLILNNLTIQITDITNPLWLDSVIHIYLKIVTFLQWTAETTKDETREQLYKTIVNIWTRTSPNIPKISIIKVFLLDYEGTLFLMKNAIQYYGQVQLKKPYSSNAKNSEWYLCCGKRRIQRLQIDFSDQVGIFLICKAMSRQRQAIPYWLKHIEKNYPASLHEFFLTLGFPSLESSFCHRYTIPFSEGKALFHKVQSYVRQGKQHLHSLMLDYETITSTRLEKSLYLLIKGKITKYYNDILKLNLVIKAVEKGKNWSQLVEILPNMHSVCIVHVDHECSGCEKRLLLKLDFIRNTKIAEQKLLNRVIGYILFFPFGLFKSGSLRA',\n",
       " 'FQQRELHLIYKNNLFKSEGYIV',\n",
       " 'DIV',\n",
       " 'EVIK',\n",
       " 'IRKRKDY',\n",
       " 'TAYFIQDNLISL',\n",
       " 'ASHK',\n",
       " 'ENYAHRLTSD',\n",
       " 'CLVTPEVTF',\n",
       " 'R',\n",
       " 'LLRCYCS',\n",
       " 'LALILAHWVNP',\n",
       " 'ALSLIWCKKLRKY',\n",
       " 'DTLVELNYDIPYIINIKKCLL',\n",
       " 'STSTSFKYIRKRIKLPLRSKKPRHVFSDDK',\n",
       " '',\n",
       " 'NFVVKFLECRCECKLRKTNI',\n",
       " 'N',\n",
       " 'KIKKL',\n",
       " 'YK',\n",
       " 'NKTFFIFFVCWILNVHQASVVEYQGFHRLLNLLNFT',\n",
       " 'DYIILFDTRYIFSKVRKTALSC',\n",
       " 'MPVIHFK',\n",
       " 'ILSSTCSIQLNILMQGCPLL',\n",
       " 'S',\n",
       " 'TSVTY',\n",
       " 'PEV',\n",
       " 'GCIVIIHIIRNCVIVGFHITFTV',\n",
       " 'GIRQH',\n",
       " 'RHFFRIVRYSPFLFIQFGIIF',\n",
       " 'LPFNMMQLIMLMILNTYCHLS',\n",
       " 'SSMRIGTTSS',\n",
       " 'KHILIRS',\n",
       " 'DLTMFFQLLQGHSVRIFLLRKILIIGGCYYSCIYLNLPGG',\n",
       " 'KDKEGH',\n",
       " 'EVTGNL',\n",
       " 'EQIWSCLE',\n",
       " 'QILLFLRFQ',\n",
       " 'KQ',\n",
       " 'SEML',\n",
       " 'AYKLQNRD',\n",
       " 'EYGTVTKT',\n",
       " 'PLIYATMSLL',\n",
       " 'ASLVMNVLS',\n",
       " 'LKTSSLRGITHGKSVPALGSKTVMELIILLLMC',\n",
       " 'VNYTTRETKLLPCTWRTVSN',\n",
       " 'LNT',\n",
       " 'NPCVSAVYKHMASLHQENTGSNHR',\n",
       " 'LSHIMMNSMISI',\n",
       " 'NFKFQTIRLSVPKTLLKL',\n",
       " 'FRRN',\n",
       " 'LLNNTVNYSPYKSIGVIPFYTMMLH',\n",
       " 'IRLKNMRNRQKS',\n",
       " 'NLKSCLKLFVFSNL',\n",
       " '',\n",
       " 'QRIIIILKDHGIKPHMICI',\n",
       " 'LHILDNILCQIHFHHKPKFISIFGSGISWSMNLFSQLK',\n",
       " '',\n",
       " 'VI',\n",
       " 'VSL',\n",
       " 'KTG',\n",
       " 'PL',\n",
       " 'TRSVGTVSSIEVY',\n",
       " 'DITLLLDFNQRECQSNFWVKQTFP',\n",
       " 'IKY',\n",
       " 'SLLKS',\n",
       " 'SIWLLLIGIFPSH',\n",
       " 'KKKS',\n",
       " 'I',\n",
       " 'EELLGSYRIVSEMSKHSQKPC',\n",
       " 'QMDWQKHSLVT',\n",
       " 'WLSLRGNRKKHYYIRLLGTTIQQA',\n",
       " 'GRTL',\n",
       " '',\n",
       " 'GVQVLLLILRNTTSPSDMNLHGIS',\n",
       " 'TTVIDVMV',\n",
       " 'RIYLIGCIF',\n",
       " 'YHYVICMSVTFIAHHIV',\n",
       " 'QKIIEITHLIVLMLIIIT',\n",
       " 'EV',\n",
       " 'RDFSRNCGHAYHVPKSPLWS',\n",
       " 'KLN',\n",
       " 'N',\n",
       " 'SPASWVIINV',\n",
       " 'QL',\n",
       " 'VFFQLMLPTIIKRTRLN',\n",
       " 'MRHELLSN',\n",
       " 'LLLQVIVVYF',\n",
       " 'SLRKHLSIQGSFILVKSNISTVFNCRNH',\n",
       " 'KQWQGVDPYLTLFSMIFKVLWPVLVHPLREEQARHGTFFRAVG',\n",
       " 'LHSIQC',\n",
       " 'Q',\n",
       " 'IY',\n",
       " 'IRITLGFL',\n",
       " 'GSILIFLVSKSLLPSRKN',\n",
       " 'LLS',\n",
       " 'RPKF',\n",
       " 'EGYHF',\n",
       " 'IQKNCSTGT',\n",
       " 'VILSLQVYFNSRMHWNFLKRKNYSIS',\n",
       " 'FLKNLV',\n",
       " 'QMPQILS',\n",
       " 'IH',\n",
       " 'A',\n",
       " 'MYQDQRK',\n",
       " '',\n",
       " 'RSLDKQFAKISRSRHKIE',\n",
       " '',\n",
       " 'ILFST',\n",
       " 'VLI',\n",
       " 'RTKECVSGFYHQTL',\n",
       " '',\n",
       " 'ADLLLTSFQEHLVENGFKS',\n",
       " 'AI',\n",
       " 'KEQEHY',\n",
       " 'LLGQSV',\n",
       " 'LQKEQC',\n",
       " '',\n",
       " 'N',\n",
       " 'EN',\n",
       " 'RETDGKVGFLILMHWTMIYLSPWKSSHVLLMWLIS',\n",
       " 'GHIHGLTS',\n",
       " 'KGKG',\n",
       " 'LVPHCHVY',\n",
       " 'SNLR',\n",
       " 'SGLIYLRI',\n",
       " 'GNNLIYLQTQNQL',\n",
       " 'TCCRMTVRNCDLKEAMTQS',\n",
       " 'IMSVVLLTGKLSRNIPLLIV',\n",
       " 'LGR',\n",
       " 'EIEHRILAHGQKIRSVILP',\n",
       " 'E',\n",
       " 'IAHQQHLKKLLRWFLDCYG',\n",
       " 'LKALQTEKNCLFLFSIQE',\n",
       " 'IWTIRQCLTFYLHTTQAT',\n",
       " 'FIDIMINMDNIPLWQTG',\n",
       " 'VIHLHVQLYQLTHWVNMLGEVKLLLIVI',\n",
       " 'SFKILLI',\n",
       " 'ELQF',\n",
       " 'ILHCLLLNCRQHQMSLSV',\n",
       " 'C',\n",
       " 'ISAALGMYRPNTYILINL',\n",
       " 'MWI',\n",
       " 'TSIWTMSWFMTMTLFAVGLKGD',\n",
       " 'AEYLDQHSH',\n",
       " 'V',\n",
       " 'MSVTLVLMTFQLLLHGH',\n",
       " 'EKL',\n",
       " 'SEAFFLMNLLKVRIQ',\n",
       " 'AQVAQKLSSHISLCIQLRVYFMHSELT',\n",
       " '',\n",
       " 'LKV',\n",
       " 'V',\n",
       " 'VGSNQLRTSQI',\n",
       " 'HSLYHPQSGIYHIDHFGFFNLLSDMNWCSPD',\n",
       " 'PTTYR',\n",
       " 'FL',\n",
       " 'C',\n",
       " 'GALQERRVHQMLFGYFLQQVIRILSIISVV',\n",
       " '',\n",
       " 'RRVSHRYRFGFTFLVKGNN',\n",
       " 'SLY',\n",
       " 'KSYRDYQTCYHLTKFKSVKFWLTPVVQLAAFGSIQASPQGLTIIMQALIIGETKLIRLRILLFHT',\n",
       " '',\n",
       " 'IVHFLNFLHIPVQSPLINK',\n",
       " 'PIRSILFIQKISLK',\n",
       " 'MQEPD',\n",
       " '',\n",
       " 'IMDQQLYRGWTPRCHSQSKI',\n",
       " 'SKIVDHQRASDSRTIKK',\n",
       " 'QNMTRDVRGRNLHRNRCSLKITCRLLRTYIVPPHFKSL',\n",
       " 'NH',\n",
       " 'MHMRTLMPRR',\n",
       " 'S',\n",
       " 'ILK',\n",
       " 'IILTLRSILLIQSY',\n",
       " 'QLLPGQKF',\n",
       " 'IQVRYNPLDIHQLPGNGLYYPENKLHICTLIAVIFLLSL',\n",
       " 'TQVFGVCLIRIKFKC',\n",
       " 'SIPTNVIYMLVLIATNSVGLQG',\n",
       " 'SHQCITSFMIFCLQVN',\n",
       " 'KRQFVWPKGKEVVLGYF',\n",
       " 'SGRKRIIYSSTLWLRIHNKKPRF',\n",
       " 'VAG',\n",
       " 'YRECCIT',\n",
       " 'TD',\n",
       " 'VLCLNQGD',\n",
       " 'Y',\n",
       " 'TT',\n",
       " 'LSKLQILQIHYG',\n",
       " 'IL',\n",
       " 'YIFT',\n",
       " 'R',\n",
       " '',\n",
       " 'HSYNGLQRPPRMKQGNSFIKLL',\n",
       " 'IFGHVLLLISQKLASSRYFY',\n",
       " 'TMKGLYS',\n",
       " '',\n",
       " 'RMLFSIMGKFNSRNHIAQMQKTQNGTCVAVNEEFNGSKLISQTRWEFF',\n",
       " 'FVKQCHAKDKQFLTG',\n",
       " 'NI',\n",
       " 'KRIILLHYTSFS',\n",
       " 'LWVSLL',\n",
       " 'SHLSAIVILFHSVKERLFFTRSSLMFVKANNIYILLCWIMKQSPLLDLRNHFICSLRER',\n",
       " 'LNITMIY',\n",
       " 'S',\n",
       " 'I',\n",
       " 'SSRQ',\n",
       " 'KKVKIGHNLLRSFLICIQYA',\n",
       " 'CTWIMSVLDARNGYYLNWILSEIQRSQNKNYLTE',\n",
       " 'SGISYSFHSVCLNLDH',\n",
       " 'GHNFNRENFI',\n",
       " 'FTKTIYLRVRVTLSKILYEK',\n",
       " '',\n",
       " 'NK',\n",
       " 'ENEKTIRQLILYKIILYRFRPHTSEKITRTD',\n",
       " 'LVISVWSHQR',\n",
       " 'LFNVNYSDVIAHN',\n",
       " 'H',\n",
       " 'YWHIG',\n",
       " 'ILELYP',\n",
       " 'YGVRN',\n",
       " 'GNTEIH',\n",
       " 'LN',\n",
       " 'IMTYHIS',\n",
       " 'I',\n",
       " 'KSVCCNLQAPLLNTLGKELSYR',\n",
       " 'DQKNHVMFSLMTSDKTS',\n",
       " 'LNF',\n",
       " 'NVDVNVN',\n",
       " 'EKQIYKIKKLKSFDISKTKHSSSFLCV']"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "polypeptides = aa.split(\"*\")\n",
    "\n",
    "polypeptides"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "456"
      ]
     },
     "execution_count": 14,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(polypeptides)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['VNPFLNMQHPTQYPDARLSSPIILDQCDLLARSLGLYSHYSHNPKLRNCRIPHHIYRLRNSTALKTFLQNCSILTVPFHSIWDHILTSIQYDAINHVDDFKYLLPSELVKYANWDNEFLKAYLNKILGLDHVFSASARSQCEDFSPKENPYYWGMLLLVHLSQLARRIKGQRGSLRSNWKFIGTDLELFGIADFVIFKVPVKTIIRNAVSLQASKPGLRIWYRDQNLTPYLCDDEFIVSVASYECFIMIKDVFIERYNTWEICARAWLEDSDGADYPPLDVLGELYNQGDQIIAMYLEDGFKLIKHLEPLCVSCIQTHGIFTPRKYWFQSQMIKSYYDELHDLNLKLQISDNKAECAQNFIKTIVQAKLTPQQYCELFSLQKHWGHPVLYNDVALDKVKKHAQSTKILKPKVMFETFCVFKFIVAKNHYHSQGSWYKTTHDLHLTPYLRQHIVSNSFPSQAEIYQHLWEWYFVEHEPLFSTKIISDLSIFIKDRLTAVNQECWDSVFDRSVLGYNPPVRFQSKRVPEQFLGQADFSLNQILEFAEKLEYLAPSYRNFSFSLKEKELNIGRTFGKLPYRVRNVQTLAEALLADGLAKAFPSNMMVVTEREQKEALLHQASWHHNSASIGENAIVRGASFVTDLEKYNLAFRYEFTRHFIDYCNRCYGVKNLFDWMHFLIPLCYMHVSDFYSPPHCVTEDNRNNPPDCANAYHYHLGGIEGLQQKLWTCISCAQITLVELKTKLKLKSSVMGDNQCITTLSLFPIDAPNDYQENEAELNAARVAVELAITTGYSGIFLKPEETFVHSGFIYFGKKQYLNGVQLPQSLKTMARCGPLSDSIFDDLQGSLASIGTSFERGTSETRHIFPSRWIASFHSMLAINLLNQNHLGFPLGFNIDISCFKKPLTFSEKLIALITPQVLGGLSFLNPEKLFYRNISDPLTSGLFQLKNALEFLEKEELFYILISKKPGLADASDFVMNPLGLNVPRSKEIITFLRQTVRENITITSQNRIINSLFHIGSDLEDQRVCEWLLSSNPVMSRFAADIFSRTPSGKRLQVLGYLEGTRTLLASRTISLTTEGTMLMKLRELTRNRWKSWFSYIDALDDDLSESLEKFTCTVDVANFLRAYSWSDVLKGKRLIGATLPCLLEQFEVKWINLSEDLREQFNLSSDSKSTINLLPYDCKELRLEGSNDTELNYVSCALDRKVVQKHPSVNRLAWTIGNRAPYIGSRTEDKIGYPPLRVNCPSAALKEAIEMVSRLLWVTQGTADREKLLIPLLNSRVNLDYQTVLNFLPTHYSGNIVHRYNDQYGQHSFMANRMSNTSTRAIISTNTLGKYAGGGQAAIDSNIIFQNTINLGVAVLDIALSLAKLSSASNVTFRLMLNKCCTRHVPSEYLYFDKPLDVDLNKYMDNELVYDNDPLCSGIKGRLGRVSRSTLSLSLNVSDIGSYDFPTIAAWTLGETIVGSIFSDESSQSTDPISSGCTKTFVTHFLVYPVESIFYAFGANLIVESLSLSRIKSIKNLSDLTFLISSTIRNLSHRSLRILQSTFRHELVLTRLAHHIPLISLMLGGSAGEKSSSDAVRLFLTASYQNFINNFSCLMKKGQSSLPVWLYFPSEGQQLKPILKILQRLSDLLSPDKIQKRKILADTCCPIGSFWVYPSKSTRTNHYYASLNYWRDKANKVKNTPFSHLINCSFPEFSSHTSSVSSNQQVTNSKYIVYPENITEINARTRLINYGSTALQGMDTKMPLSEQNLVENCRPSEGIRFKDNQKITKHDQRCEREESSPQQMFPEDNMQTPAHIHSSSPFQILIKSLDAHEDFDASKIILNSEINNLNLTEYTLNTKLLTTPTRTEILDTSPLQSSRYSSTSRERSLLSREQASYLYVDCSNIPSISLDPGFRSMSDQNQVQMLINTYKRDLHACFDSNQFCRFTGVVSSMHYKLYDLLPPGKLKKAICLAEGEGSGARLLLKWKETDYLFFNTLATDSQQEAEILSGRVIPRMLYNIDRLSALLESRRLILNNLTIQITDITNPLWLDSVIHIYLKIVTFLQWTAETTKDETREQLYKTIVNIWTRTSPNIPKISIIKVFLLDYEGTLFLMKNAIQYYGQVQLKKPYSSNAKNSEWYLCCGKRRIQRLQIDFSDQVGIFLICKAMSRQRQAIPYWLKHIEKNYPASLHEFFLTLGFPSLESSFCHRYTIPFSEGKALFHKVQSYVRQGKQHLHSLMLDYETITSTRLEKSLYLLIKGKITKYYNDILKLNLVIKAVEKGKNWSQLVEILPNMHSVCIVHVDHECSGCEKRLLLKLDFIRNTKIAEQKLLNRVIGYILFFPFGLFKSGSLRA']"
      ]
     },
     "execution_count": 15,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "long_polypep_chains = list(filter(lambda x: len(x) > 100, aa.split(\"*\")))\n",
    "long_polypep_chains"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1"
      ]
     },
     "execution_count": 16,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(long_polypep_chains)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.3"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 2
}