-
Notifications
You must be signed in to change notification settings - Fork 1
/
main.py
1006 lines (904 loc) · 50.1 KB
/
main.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
import os
import sys
from PySide2 import *
from interface_ui import *
from invoice import MakePDF
from Custom_Widgets.Widgets import *
from matplotlib import pyplot as plt
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.figure import Figure
from matplotlib.gridspec import GridSpec
import numpy as np
from PIL import Image
from Preporcessing import *
from Database_methods import *
import pygame
import sqlite3
import re
class MainWindow(QMainWindow):
#! Ajout de la verification de email
def isValid(self, email):
regex = re.compile(r"^\w+@\w+\.\w+$")
if re.fullmatch(regex, email):
return 1
else:
return 0
def LoadModels(self):
path_modelX = "Models\capsule-X"
path_modelY = "Models\capsule-Y"
path_modelZ = "Models\capsule-Z"
#! loadX
self.ModelX = CapsuleNetwork(**params)
Xcheckpoint = tf.train.Checkpoint(model=self.ModelX)
Xcheckpoint.restore(path_modelX)
#! loadY
self.ModelY = CapsuleNetwork(**params)
Ycheckpoint = tf.train.Checkpoint(model=self.ModelY)
Ycheckpoint.restore(path_modelY)
#! loadZ
self.ModelZ = CapsuleNetwork(**params)
Zcheckpoint = tf.train.Checkpoint(model=self.ModelZ)
Zcheckpoint.restore(path_modelZ)
def StartClassification(self):
if self.PatientID is not None and self.PSelected == True and self.scan !="":
self.ui.label_waiting.show()
#! Load all models
self.LoadModels()
#! Make a prediction
if (self.ClassMethode == 0):
print("major")
classification = final_predMAJOR(self.Nodule3D[:,:,32], self.Nodule3D[:,32,:],self.Nodule3D[32,:,:],self.ModelX,self.ModelY,self.ModelZ)
if (self.ClassMethode == 1):
print("seuil")
classification = final_pred(self.Nodule3D[:,:,32], self.Nodule3D[:,32,:],self.Nodule3D[32,:,:],self.ModelX,self.ModelY,self.ModelZ)
if (self.ClassMethode == 2):
print("thj")
classification = thj_pred(self.Nodule3D[:,:,32], self.Nodule3D[:,32,:],self.Nodule3D[32,:,:],self.ModelX,self.ModelY,self.ModelZ)
if (self.ClassMethode == 3):
print("strict")
classification = final_predSTRICT(self.Nodule3D[:,:,32], self.Nodule3D[:,32,:],self.Nodule3D[32,:,:],self.ModelX,self.ModelY,self.ModelZ)
result = None
if classification == 0:
result="The nodule is Benin"
self.ModelResult = "Benin"
else:
result="The nodule is Malignant"
self.ModelResult = "Malignant"
print(result)
# Charger le fichier audio
pygame.mixer.music.load("notificationsound.mp3")
# Lancer la lecture
pygame.mixer.music.play()
self.ui.label_13.setText("The nodule classification is complete.")
#self.ui.popupNotificationSubContainer.show()
self.ui.notificationBtn.click()
#####################################################################################################
self.ui.textRPname.setText(self.PatientName)
self.ui.textRPage.setText(self.PatientBirthday)
self.ui.textRPwilaya.setText(self.PatientWilaya)
self.ui.textRPsexe.setText(self.PatientSexe)
self.ui.textRPemail.setText(self.PatientEmail)
self.ui.textRPphone.setText(self.PatientPhone)
self.ui.textRPallergies.setText(self.PatientAllergies)
self.ui.textRPsmoking.setText(self.PatientSmoking)
self.ui.textRPmedhist.setText(self.PatientMedHist)
self.ui.textRModelClassification.setText(self.ModelResult)
#self.ui.label_13.setText("Notification message")
#####################################################################################################
self.ui.label_waiting.hide()
##! X Classification
prX, valX = predict_proba(self.ModelX,tf.expand_dims(Preprocessing(self.Nodule3D[:,:,32]),0))
#print(valX[0])
if(valX[0] == 0):
self.ui.textXClasse.setText("Benin")
#print("X benin")
else:
self.ui.textXClasse.setText("Malignant")
#print("Xmalin")
prX = prX.numpy()
#print(prX)
#print("PRCG X ",round(np.max(prX)*100,2))
self.ui.textXPctg.setText(str(round(np.max(prX)*100,2)))
##! Y Classification
prY, valY = predict_proba(self.ModelY,tf.expand_dims(Preprocessing(self.Nodule3D[:,32,:]),0))
if(valY[0] == 0):
self.ui.textYClasse.setText("Benin")
else:
self.ui.textYClasse.setText("Malignant")
prY = prY.numpy()
self.ui.textYPctg.setText(str(round(np.max(prY)*100,2)))
##! Z Classification
prZ, valZ = predict_proba(self.ModelZ,tf.expand_dims(Preprocessing(self.Nodule3D[32,:,:]),0))
if(valZ[0] == 0):
self.ui.textZClasse.setText("Benin")
else:
self.ui.textZClasse.setText("Malignant")
prZ = prZ.numpy()
self.ui.textZPctg.setText(str(round(np.max(prZ)*100,2)))
self.ui.textFinalClassification.setText(result)
#self.PatientID = ""
#self.PSelected = False
self.GlobalStartClassification = 1
print("self.GlobalStartClassification = ", self.GlobalStartClassification)
else:
if self.scan == "":
self.ui.label_waiting.hide()
self.msg.setText("Please, select the right ct-scan to start the classification.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
#! Patient ID save and Name and all information
self.PatientID = None
self.PatientName = ""
self.PatientWilaya = ""
self.PatientBirthday = ""
self.PatientSexe = ""
self.PatientAllergies = ""
self.PatientSmoking = ""
self.PatientCancerFamilly = ""
self.PatientMedHist = ""
self.PatientEmail = ""
self.PatientPhone = ""
#ModelResult
self.ModelResult =""
self.ui.label_waiting.hide()
self.msg.setText("You must choose a patient befor starting the classification")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
def ShowLabels(self):
#* Display labels on window
self.ui.label_addPName.show()
self.ui.label_addPWilaya.show()
self.ui.label_addPWilaya_2.show()
self.ui.label_addPSexe.show()
self.ui.label_addPAllergies.show()
self.ui.label_addPSmoking.show()
self.ui.label_addPCancerFamilly.show()
self.ui.label_addPMedHist.show()
self.ui.label_addPEmail.show()
self.ui.label_addPNumber.show()
#* Display textEdits on window
self.ui.textNamePADD.show()
self.ui.textWilayaPADD.show()
self.ui.dateEditPADD.show()
self.ui.textSexePADD.show()
self.ui.textAllergiesPADD.show()
self.ui.textSmokingPADD.show()
self.ui.textCancerFamillyPADD.show()
self.ui.textMedHistPADD.show()
self.ui.textEmailPADD.show()
self.ui.textNumberPADD.show()
self.ui.addPateintBtn.show()
self.ui.tableWidget.hide()
def hideLabels(self):
#* Hide labels and TextEdits
self.ui.label_addPName.hide()
self.ui.label_addPWilaya.hide()
self.ui.label_addPWilaya_2.hide()
self.ui.label_addPSexe.hide()
self.ui.label_addPAllergies.hide()
self.ui.label_addPSmoking.hide()
self.ui.label_addPCancerFamilly.hide()
self.ui.label_addPMedHist.hide()
self.ui.label_addPEmail.hide()
self.ui.label_addPNumber.hide()
self.ui.textNamePADD.hide()
self.ui.textWilayaPADD.hide()
self.ui.dateEditPADD.hide()
self.ui.textSexePADD.hide()
self.ui.textAllergiesPADD.hide()
self.ui.textSmokingPADD.hide()
self.ui.textCancerFamillyPADD.hide()
self.ui.textMedHistPADD.hide()
self.ui.textEmailPADD.hide()
self.ui.textNumberPADD.hide()
self.ui.addPateintBtn.hide()
def ResearchPatient(self):
self.hideLabels()
#? Check if the patient exist in the database
if PatientResearchPhoneName(self.ui.textPhaneNumberSearch.toPlainText(), self.ui.textNamePatientSearch.toPlainText()) ==1:
#* show the patient info in the table
self.add_data()
else:
#! The patient doesn't exist, we display labels if the labels are filled , or we display all the database
self.msg.setText("There is no patient with this name and phone number")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
#! Here the patient will be added
if self.ui.textPhaneNumberSearch.toPlainText()!="" and self.ui.textNamePatientSearch.toPlainText()!="":
self.ShowLabels()
else:
self.add_data()
#? Add a patient
def AddPatient(self):
if PatientResearchPhoneName(PhonePatient=self.ui.textNumberPADD.toPlainText(), NamePatient=self.ui.textNamePADD.toPlainText())==-1:
self.ShowLabels()
self.selected_wilaya = self.ui.textWilayaPADD.itemText(self.ui.textWilayaPADD.currentIndex())
self.selected_sex = self.ui.textSexePADD.itemText(self.ui.textSexePADD.currentIndex())
self.selected_smok = self.ui.textSmokingPADD.currentIndex()
self.selected_CancerF = self.ui.textCancerFamillyPADD.currentIndex()
print(self.selected_wilaya)
if(self.ui.textNamePADD.toPlainText()!="" and self.ui.dateEditPADD.text()!="" and self.ui.textAllergiesPADD.toPlainText()!="" and self.ui.textMedHistPADD.toPlainText()!=""and self.ui.textEmailPADD.toPlainText()!="" and self.ui.textNumberPADD.toPlainText() !=""):
if len(self.ui.textNumberPADD.toPlainText()) == 10:
if self.isValid(self.ui.textEmailPADD.toPlainText()) == 1:
#value_familly = 0
PatientInsert(self.ui.textNamePADD.toPlainText(),
self.ui.dateEditPADD.text(),
self.selected_wilaya,
self.selected_sex,
self.ui.textAllergiesPADD.toPlainText(),
self.selected_smok,
self.ui.textMedHistPADD.toPlainText(),
self.selected_CancerF,
self.ui.textEmailPADD.toPlainText(),
self.ui.textNumberPADD.toPlainText()
)
self.ui.addPateintBtn.hide()
self.ui.label_addPName.hide()
self.ui.label_addPWilaya.hide()
self.ui.label_addPWilaya_2.hide()
self.ui.label_addPSexe.hide()
self.ui.label_addPAllergies.hide()
self.ui.label_addPSmoking.hide()
self.ui.label_addPCancerFamilly.hide()
self.ui.label_addPMedHist.hide()
self.ui.label_addPEmail.hide()
self.ui.label_addPNumber.hide()
self.ui.textNamePADD.hide()
self.ui.textWilayaPADD.hide()
self.ui.dateEditPADD.hide()
self.ui.textSexePADD.hide()
self.ui.textAllergiesPADD.hide()
self.ui.textSmokingPADD.hide()
self.ui.textCancerFamillyPADD.hide()
self.ui.textMedHistPADD.hide()
self.ui.textEmailPADD.hide()
self.ui.textNumberPADD.hide()
self.add_data()
self.msg.setText("Patient added succefully.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
self.selected_wilaya = "Adrar"
self.selected_sex = "Male"
self.selected_smok = 0
self.selected_CancerF= 0
self.ui.textWilayaPADD.setCurrentIndex(0)
self.ui.textSexePADD.setCurrentIndex(0)
self.ui.textSmokingPADD.setCurrentIndex(0)
self.ui.textCancerFamillyPADD.setCurrentIndex(0)
self.ui.textNamePADD.clear()
#self.ui.textWilayaPADD.hide()
self.ui.dateEditPADD.setDate(QDate(2000, 1, 1))
#self.ui.textSexePADD.hide()
self.ui.textAllergiesPADD.clear()
#self.ui.textSmokingPADD.hide()
#self.ui.textCancerFamillyPADD.hide()
self.ui.textMedHistPADD.clear()
self.ui.textEmailPADD.clear()
self.ui.textNumberPADD.clear()
else:
self.msg.setText("Incorrect email !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
self.msg.setText("Incorrect phone number !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
self.msg.setText("Fill all the fileds, please.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
self.msg.setText("The patient already exist.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
#? Print data in the table, (errnigh l affichage nni g tableau)
def add_data(self):
"""
Print the data in the table, and contuniously refresh the table after a research
"""
self.ui.tableWidget.clearContents()
self.ui.tableWidget.setRowCount(0)
self.ui.tableWidget.show()
row_count = self.ui.tableWidget.rowCount()
print(row_count)
self.ui.tableWidget.insertRow(row_count)
#! Check if the patient exist in the table patient
if PatientResearchPhoneName(self.ui.textPhaneNumberSearch.toPlainText(), self.ui.textNamePatientSearch.toPlainText()) == 1:
#* Get the patient's information if he exists
data = PatientInfoByPhoneName(self.ui.textPhaneNumberSearch.toPlainText(), self.ui.textNamePatientSearch.toPlainText())
id_item = QTableWidgetItem(str(data[0]))
name_item = QTableWidgetItem(str(data[1]))
birthday_item = QTableWidgetItem(data[2])
wilaya_item = QTableWidgetItem(str(data[3]))
sex_item = QTableWidgetItem(str(data[4]))
allergies_item = QTableWidgetItem(data[5])
if str(data[6]) == "0":
smoking_item = QTableWidgetItem("No")
else:
smoking_item = QTableWidgetItem("Yes")
medhist_item = QTableWidgetItem(str(data[7]))
if str(data[8]) == "0":
cancerf_item = QTableWidgetItem("No")
else:
cancerf_item = QTableWidgetItem("Yes")
eamil_item = QTableWidgetItem(str(data[9]))
phone_item = QTableWidgetItem(str(data[10]))
self.ui.tableWidget.setItem(row_count, 0, id_item)
self.ui.tableWidget.setItem(row_count, 1, name_item)
self.ui.tableWidget.setItem(row_count, 2, birthday_item)
self.ui.tableWidget.setItem(row_count, 3, wilaya_item)
self.ui.tableWidget.setItem(row_count, 4, sex_item)
self.ui.tableWidget.setItem(row_count, 5, allergies_item)
self.ui.tableWidget.setItem(row_count, 6, smoking_item)
self.ui.tableWidget.setItem(row_count, 7, medhist_item)
self.ui.tableWidget.setItem(row_count, 8, cancerf_item)
self.ui.tableWidget.setItem(row_count, 9, eamil_item)
self.ui.tableWidget.setItem(row_count, 10, phone_item)
else:
#* If the patient doesn't exist, we print information of all the patient (the research labels should be blank, at least one of them)
data = PatientInfoByPhoneName("", "")
data = list(data)
print(len(data))
if row_count == 0:
for i in range(len(data)):
self.ui.tableWidget.insertRow(row_count)
id_item = QTableWidgetItem(str(data[i][0]))
name_item = QTableWidgetItem(str(data[i][1]))
birthday_item = QTableWidgetItem(data[i][2])
wilaya_item = QTableWidgetItem(str(data[i][3]))
sex_item = QTableWidgetItem(str(data[i][4]))
allergies_item = QTableWidgetItem(data[i][5])
if str(data[i][6]) == "0":
smoking_item = QTableWidgetItem("No")
else:
smoking_item = QTableWidgetItem("Yes")
medhist_item = QTableWidgetItem(str(data[i][7]))
if str(data[i][8]) == "0":
cancerf_item = QTableWidgetItem("No")
else:
cancerf_item = QTableWidgetItem("Yes")
eamil_item = QTableWidgetItem(str(data[i][9]))
phone_item = QTableWidgetItem(str(data[i][10]))
self.ui.tableWidget.setItem(row_count, 0, id_item)
self.ui.tableWidget.setItem(row_count, 1, name_item)
self.ui.tableWidget.setItem(row_count, 2, birthday_item)
self.ui.tableWidget.setItem(row_count, 3, wilaya_item)
self.ui.tableWidget.setItem(row_count, 4, sex_item)
self.ui.tableWidget.setItem(row_count, 5, allergies_item)
self.ui.tableWidget.setItem(row_count, 6, smoking_item)
self.ui.tableWidget.setItem(row_count, 7, medhist_item)
self.ui.tableWidget.setItem(row_count, 8, cancerf_item)
self.ui.tableWidget.setItem(row_count, 9, eamil_item)
self.ui.tableWidget.setItem(row_count, 10, phone_item)
row_count = row_count + 1
else:
id_item = QTableWidgetItem(str(data[-1][0]))
name_item = QTableWidgetItem(str(data[-1][1]))
birthday_item = QTableWidgetItem(data[-1][2])
wilaya_item = QTableWidgetItem(str(data[-1][3]))
sex_item = QTableWidgetItem(str(data[-1][4]))
allergies_item = QTableWidgetItem(data[-1][5])
smoking_item = QTableWidgetItem(str(data[-1][6]))
medhist_item = QTableWidgetItem(str(data[-1][7]))
cancerf_item = QTableWidgetItem(str(data[-1][8]))
eamil_item = QTableWidgetItem(str(data[-1][9]))
phone_item = QTableWidgetItem(str(data[-1][10]))
self.ui.tableWidget.setItem(row_count-1, 0, id_item)
self.ui.tableWidget.setItem(row_count-1, 1, name_item)
self.ui.tableWidget.setItem(row_count-1, 2, birthday_item)
self.ui.tableWidget.setItem(row_count-1, 3, wilaya_item)
self.ui.tableWidget.setItem(row_count-1, 4, sex_item)
self.ui.tableWidget.setItem(row_count-1, 5, allergies_item)
self.ui.tableWidget.setItem(row_count-1, 6, smoking_item)
self.ui.tableWidget.setItem(row_count-1, 7, medhist_item)
self.ui.tableWidget.setItem(row_count-1, 8, cancerf_item)
self.ui.tableWidget.setItem(row_count-1, 9, eamil_item)
self.ui.tableWidget.setItem(row_count-1, 10, phone_item)
self.ui.tableWidget.horizontalHeader().setStretchLastSection(True)
#? Select a file from the desktop
def clicker(self):
if self.PSelected == True:
print("You clicked the button to choose a file !")
fname = QFileDialog.getOpenFileName(self, "Open File and Choose the 3D Nodule", "" , "Python Files(*.npy)")
self.scan = fname[0]
print("hh ",fname[0])
if fname[0] !="" and fname[1] !="":
self.Nodule3D = np.load(fname[0],allow_pickle=True)
print("shape ",self.Nodule3D.shape)
if self.Nodule3D.shape[0] == 64 and self.Nodule3D.shape[1] == 64 and self.Nodule3D.shape[2] == 64:
#print(Nodule3D.shape)
#plt.plot(Nodule3D[10,:,:,0])
#plt.show()
#Clear the canvas
self.figure.clear()
#plot
#im = Image.fromarray(Nodule3D[10,:,:,0])
#im.show()
#plt.imshow(Nodule3D[10,:,:,0],'gray')
self.ax1 = self.figure.add_subplot(self.grid[0, 0])
self.ax1.imshow(self.Nodule3D[32, :, :], cmap='gray')
self.ax1.set_title('Vue X')
self.ax2 = self.figure.add_subplot(self.grid[0, 1])
self.ax2.imshow(self.Nodule3D[:, 32, :], cmap='gray')
self.ax2.set_title('Vue Y')
self.ax3 = self.figure.add_subplot(self.grid[0, 2])
self.ax3.imshow(self.Nodule3D[:, :, 32], cmap='gray')
self.ax3.set_title('Vue Z')
#refresh
self.canvas.draw()
else:
self.msg.setText("Please, select the right ct-scan to start the classification.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
self.msg.setText("Please, select a ct-scan to start the classification, otherwise, no classification is possible")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
self.msg.setText("Please, select a patient to start the classification.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
#? Select a row from the table (modifyight i la citte)
def handle_item_selection(self):
selected_row = self.ui.tableWidget.currentRow()
if selected_row >= 0:
if self.ui.tableWidget.item(selected_row, 0) is not None:
self.PatientID = self.ui.tableWidget.item(selected_row, 0).text()
self.PatientName = self.ui.tableWidget.item(selected_row, 1).text()
self.PatientWilaya = self.ui.tableWidget.item(selected_row, 3).text()
self.PatientBirthday = self.ui.tableWidget.item(selected_row, 2).text()
self.PatientSexe = self.ui.tableWidget.item(selected_row, 4).text()
self.PatientAllergies = self.ui.tableWidget.item(selected_row, 5).text()
self.PatientSmoking = self.ui.tableWidget.item(selected_row, 6).text()
self.PatientCancerFamilly = self.ui.tableWidget.item(selected_row, 8).text()
self.PatientMedHist = self.ui.tableWidget.item(selected_row, 7).text()
self.PatientEmail = self.ui.tableWidget.item(selected_row, 9).text()
self.PatientPhone = self.ui.tableWidget.item(selected_row, 10).text()
print(self.PatientID)
self.PatientIDTemp = self.PatientID
self.PatientNameTemp = self.PatientName
else:
self.msg.setText("Please choose a patient from the table")
self.msg.exec_()
def PatientSelect(self):
if self.PatientID != "":
self.PSelected = True
self.msg.setText("The patient named : "+self.PatientName+" has been selected.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
self.GlobalStartClassification = 0
else:
self.msg.setText("Please, select a patient to start the classification.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
def ChooseClassificationMethode(self):
if self.ui.radioMajor.isChecked() :
self.ClassMethode = 0
self.ui.label_CM.setText("Majority")
if self.ui.radioThresholding.isChecked() :
self.ClassMethode = 1
self.ui.label_CM.setText("Thresholding")
if self.ui.radioGameTheory.isChecked() :
self.ClassMethode = 2
self.ui.label_CM.setText("Game Theory")
if self.ui.radioStrict.isChecked() :
self.ClassMethode = 3
self.ui.label_CM.setText("Strict")
print("methode ",self.ClassMethode)
def showNodule(self):
temp = self.scan
import subprocess
command = 'contours.py ' # Remplacez 'dir' par la commande de votre choix
# Exécute la commande CMD et récupère la sortie
#! Check if a ct-scan file was selected
if self.scan !="":
subprocess.Popen(["python", command, temp])
else:
self.msg.setText("No CT-scan selected ! \nPlease select a valid CT-scan file and start the classification process, then you can visulalize the nodule.")
self.msg.exec_()
def NodClassification(self):
self.ui.label_waiting.setText("Please wait !")
self.ui.label_13.setText("The Nodule Classification is complete !")
self.StartClassification()
self.ui.label_waiting.setText("")
def get_statistics(self):
self.conn = sqlite3.connect("NoduleDataBase.db")
self.cursor = self.conn.cursor()
self.cursor.execute("SELECT WilayaP, COUNT(*) FROM Patient WHERE idP in (SELECT idP from Nodule where NoduleClassification == '1') GROUP BY WilayaP")
results = self.cursor.fetchall()
# Générer les statistiques sous forme de dictionnaire
stats = {result[0]: result[1] for result in results}
self.conn.close()
return stats
def update_graph(self):
self.conn = sqlite3.connect("NoduleDataBase.db")
self.cursor = self.conn.cursor()
# Récupérer les données de la base de données
self.cursor.execute("""
SELECT Patient.Allergies, Nodule.NoduleClassification, Patient.Smoking, Patient.CancerFamilly, Patient.MedHistory
FROM Patient
INNER JOIN Nodule ON Patient.idP = Nodule.idP
""")
data = self.cursor.fetchall()
# Préparer les variables pour la représentation graphique
allergies_malignant = 0
allergies_benign = 0
smoking_malignant = 0
smoking_benign = 0
cancer_family_positive = 0
cancer_family_negative = 0
med_history_none = 0
med_history_diseases = 0
# POur chaque ligne dans la base de données, on effectue differents tests
for row in data:
allergy, malignant, smoking, cancer_family, med_history = row
#! Cas allergy
if allergy.upper()!='NONE':
if malignant == 1:
allergies_malignant += 1
else:
if malignant == 1:
allergies_benign += 1
#! Cas smoking
if smoking == 1:
if malignant == 1:
smoking_malignant += 1
else:
if malignant == 1:
smoking_benign += 1
#! Cas Cancer Famillly
if cancer_family == 1:
if malignant == 1:
cancer_family_positive += 1
else:
if malignant == 1:
cancer_family_negative += 1
#! Cas medical history
if med_history.upper()!="NONE":
if malignant == 1:
med_history_diseases += 1
else:
if malignant == 1:
med_history_none += 1
# Créer le graphique
malignant_values = [allergies_malignant, smoking_malignant, cancer_family_positive, med_history_diseases]
benign_values = [allergies_benign, smoking_benign, cancer_family_negative, med_history_none]
self.conn.close()
return malignant_values,benign_values
def maj_stat(self):
# Obtenir les statistiques à partir de la base de données
self.stats = self.get_statistics()
self.ax.clear()
self.wedges, self.labels, self.autotexts = self.ax.pie(self.stats.values(), autopct="%1.1f%%", startangle=90)
self.ax.axis("equal")
# Ajouter les légendes
self.ax.legend(self.wedges, self.stats.keys(), title="Wilaya", loc="center left", bbox_to_anchor=(0.87, 0.5))
self.canvasstat1.draw()
###########################################################################################################
#! Ajoute le 19/06/2023 a 23h26
self.malignant_values, self.benign_values = self.update_graph()
self.ax2.clear()
self.ax2.bar(self.ind - self.width/2, self.malignant_values, self.width, color='red', label='Positive')
self.ax2.bar(self.ind + self.width/2, self.benign_values, self.width, color='blue', label='Negative')
self.ax2.set_xlabel('Categories', color="white")
self.ax2.set_ylabel('Values', color="white")
#self.ax2.set_title('Statistics', color="white")
self.ax2.set_xticks(self.ind)
self.ax2.set_xticklabels(self.categories, color="yellow")
self.ax2.tick_params(axis='y', colors='white')
self.ax2.legend()
self.canvasstat2.draw()
def saveReport(self):
#! si le nom est ecrit dans son champ (ajt le 16/06/2023)
if self.ui.textRPname !="":
#! Ajouter la condition si le path n est pas vide
if self.scan !="" and self.ui.plainTextEdit.toPlainText()!="":
#! Ajouter la condition si une classification a ete effectue
if self.GlobalStartClassification == 1:
self.GlobalStartClassification = 0
self.Cid = self.ui.textIdC.toPlainText()
self.Cname = self.ui.textNameC.toPlainText()
print("hellow = ", self.Cid,self.Cname, self.PatientIDTemp)
#ICI On Ajoute a la BDD Consultation et on récupère IdConsultation
#self.CSid ="PS44740"
#ICI On Ajoute a la BDD Consultation et on récupère IdConsultation
if self.PatientIDTemp!="":
if SearchConsultation(self.Cid, self.PatientIDTemp,datetime.date.today()) == -1:
ConsultationInsert(self.Cid, self.PatientIDTemp, datetime.date.today(), self.ui.plainTextEdit.toPlainText())
self.CSid = ConsultationID(self.PatientIDTemp, self.Cid, datetime.date.today())
print("csid = ", self.CSid[0])
#!! Ici je vais faire une modif, je vais inserer juste la le nodule
self.msg.setText("Consultation added succefully")
self.msg.exec_()
if((self.ui.textRPname.toPlainText() != "") and (self.ui.plainTextEdit.toPlainText() != "")):
#print("oui")
"""if self.ui.textRModelClassification.toPlainText() =="Benin":
NoduleInsert(self.CSid[0], self.PatientIDTemp, np.load(self.scan, allow_pickle=True),0)
self.msg.setText("nodule added succefully")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
else:
NoduleInsert(self.CSid[0], self.PatientIDTemp, np.load(self.scan, allow_pickle=True),1)
self.msg.setText("nodule added succefully")
self.msg.exec_()"""
if NoduleResearch(self.CSid[0]) == 1:
self.msg.setText("The Nodule Existe")
self.msg.exec_()
else:
if(self.ui.radioNBenin.isChecked()):
#! Check if the nodule was aded before
print("CSID dans save report = ", self.CSid[0])
#! Add nodule to the database
NoduleInsert(self.CSid[0], self.PatientIDTemp, np.load(self.scan, allow_pickle=True),0)
self.msg.setText("Nodule added succefully")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
MakePDF(self.ui.textRPname.toPlainText(), self.CSid[0] , self.PatientID ,self.ui.textRPwilaya.toPlainText() , self.ui.textRPphone.toPlainText() , self.ui.textRPemail.toPlainText(), self.ui.textRModelClassification.toPlainText() , "Benin" , self.ui.plainTextEdit.toPlainText() , self.Cname , self.Cid)
self.msg.setText("Your Report is saved correctly !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
#* Ajout de ces deux lignes pour rafraichir le canevas (12/06/2023)
self.figure.clear()
self.canvas.draw()
self.scan = ""
#! Mise a blanc des champs (Ajoute le vendredi 16/06/2023)
self.ui.textRPname.setText("")
self.ui.textRPage.setText("")
self.ui.textRPwilaya.setText("")
self.ui.textRPsexe.setText("")
self.ui.textRPemail.setText("")
self.ui.textRPphone.setText("")
self.ui.textRPallergies.setText("")
self.ui.textRPsmoking.setText("")
self.ui.textRPmedhist.setText("")
self.ui.textRModelClassification.setText("")
self.ui.plainTextEdit.clear()
elif(self.ui.radioNMalignant.isChecked()):
#! Add nodule to the database
NoduleInsert(self.CSid[0], self.PatientIDTemp, np.load(self.scan, allow_pickle=True),1)
self.msg.setText("Nodule added succefully")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_()
MakePDF(self.ui.textRPname.toPlainText(), self.CSid[0] , self.PatientID ,self.ui.textRPwilaya.toPlainText() , self.ui.textRPphone.toPlainText() , self.ui.textRPemail.toPlainText(), self.ui.textRModelClassification.toPlainText() , "Malignant" , self.ui.plainTextEdit.toPlainText() , self.Cname , self.Cid)
self.msg.setText("Your Report is saved correctly !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
#* Ajout de ces deux lignes pour rafraichir le canevas (12/06/2023)
self.figure.clear()
self.canvas.draw()
self.scan=""
#! Mise a blanc des champs (Ajoute le vendredi 16/06/2023)
self.ui.textRPname.setText("")
self.ui.textRPage.setText("")
self.ui.textRPwilaya.setText("")
self.ui.textRPsexe.setText("")
self.ui.textRPemail.setText("")
self.ui.textRPphone.setText("")
self.ui.textRPallergies.setText("")
self.ui.textRPsmoking.setText("")
self.ui.textRPmedhist.setText("")
self.ui.textRModelClassification.setText("")
self.ui.plainTextEdit.clear()
else:
self.msg.setText("Please, Select your Classification methode !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
else :
#* Modification le 12/06/2023, modification du message
self.msg.setText("Consultation is not added, please check out the patient's information or maybe you already passed a consultation for this patient!\n ")
self.msg.exec_()
###################################################################
#Radio
else:
self.msg.setText("Please check your informations")
self.msg.exec_()
#!! aavant Ici j avais inserer juste la le nodule
else:
self.msg.setText("You must start the classification process before creating your report !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
else:
#! Cas ou le chemin est vide
if self.scan == "":
self.msg.setText("You must start the classification process before creating your report !")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
else:
self.msg.setText("You must give your feedback in order to save the report.")
self.msg.setStandardButtons(QtWidgets.QMessageBox.Ok)
self.msg.exec_() #print(self.ui.textRPname.toPlainText())
else:
self.msg.setText("Please check out the patient's information")
self.msg.exec_()
def selection_changed(self, index):
self.selected_wilaya = self.ui.textWilayaPADD.itemText(index)
print("Wilaya sélectionnée :", self.selected_wilaya)
def __init__(self, parent=None):
QMainWindow.__init__(self)
self.ui = Ui_MainWindow()
self.ui.setupUi(self)
########################################################################
# APPLY JSON STYLESHEET
########################################################################
# self = QMainWindow class
# self.ui = Ui_MainWindow / user interface class
loadJsonStyle(self, self.ui)
########################################################################
########################################################################
self.show()
# Initialiser pygame
pygame.init()
# Message
self.msg = QtWidgets.QMessageBox()
self.msg.setWindowTitle("Information")
self.msg.setWindowIcon(QtGui.QIcon("logo.png"))
#! Patient ID save and Name and all information
self.PatientID = ""
self.PatientIDTemp = ""
self.PatientName = ""
self.PatientNameTemp = ""
self.PatientWilaya = ""
self.PatientBirthday = ""
self.PatientSexe = ""
self.PatientAllergies = ""
self.PatientSmoking = ""
self.PatientCancerFamilly = ""
self.PatientMedHist = ""
self.PatientEmail = ""
self.PatientPhone = ""
#! Ajout de la wilaya selectionnee
self.selected_wilaya = "Adrar"
self.selected_sex = "Male"
self.selected_smok = 0
self.selected_CancerF= 0
#ModelResult
self.ModelResult =""
# Patient bool selected
self.PSelected = False
# Fname
self.scan= ""
#Clinicien Info et id consultation
self.Cname = ""
self.Cid = ""
self.CSid = ""
#Classification méthode
self.ClassMethode = 0
#expand center menu size
self.ui.settingsBtn.clicked.connect(lambda: self.ui.centerMenuContainer.expandMenu())
self.ui.infoBtn.clicked.connect(lambda: self.ui.centerMenuContainer.expandMenu())
self.ui.helpBtn.clicked.connect(lambda: self.ui.centerMenuContainer.expandMenu())
#Open file btn
self.ui.openfileBtn.clicked.connect(self.clicker)
#maj Stat
self.ui.statBtn.clicked.connect(self.maj_stat)
#matplolib
self.horizontalLayout_44 = QtWidgets.QHBoxLayout(self.ui.frame_matplotlib)
self.horizontalLayout_44.setObjectName("horizontalLayout_44")
#canva
self.figure = plt.figure()
self.grid = GridSpec(1, 3) # Crée une grille de 1 ligne et 3 colonnes pour les sous-graphiques
self.canvas = FigureCanvas(self.figure)
#end of canva
#add canva
self.horizontalLayout_44.addWidget(self.canvas)
#matplolibStat
self.horizontalLayout_55 = QtWidgets.QHBoxLayout(self.ui.frame_stat1)
self.horizontalLayout_55.setObjectName("horizontalLayout_55")
#canva
self.figurestat1 = plt.figure()
self.canvasstat1 = FigureCanvas(self.figurestat1)
#end of canva
#add canva
self.horizontalLayout_55.addWidget(self.canvasstat1)
# Se connecter à la base de données
self.conn = sqlite3.connect("NoduleDataBase.db")
self.cursor = self.conn.cursor()
# Obtenir les statistiques à partir de la base de données
self.stats = self.get_statistics()
# Créer un graphique camembert
self.ax = self.figurestat1.add_subplot(111)
self.wedges, self.labels, self.autotexts = self.ax.pie(self.stats.values(), autopct="%1.1f%%", startangle=90)
self.ax.axis("equal")
# Ajouter les légendes
self.ax.legend(self.wedges, self.stats.keys(), title="Wilaya", loc="center left", bbox_to_anchor=(0.87, 0.5))
#matplolibStat
self.horizontalLayout_66 = QtWidgets.QHBoxLayout(self.ui.frame_stat2)
self.horizontalLayout_66.setObjectName("horizontalLayout_66")
#canva
self.figurestat2 = plt.figure()
self.canvasstat2 = FigureCanvas(self.figurestat2)
#end of canva
self.horizontalLayout_66.addWidget(self.canvasstat2)
# Créer le graphique
self.categories = ['Allergies', 'Smoking', 'CancerFamilly', 'MedHistory']
self.malignant_values, self.benign_values = self.update_graph()
self.figurestat2.set_facecolor("none")
self.ax2 = self.figurestat2.add_subplot(111)
self.ind = np.arange(len(self.categories))
self.width = 0.35
self.ax2.bar(self.ind - self.width/2, self.malignant_values, self.width, color='red', label='Positive')
self.ax2.bar(self.ind + self.width/2, self.benign_values, self.width, color='blue', label='Negative')
self.ax2.set_xlabel('Categories', color="white")
self.ax2.set_ylabel('Values', color="white")
#self.ax2.set_title('Statistics', color="white")
self.ax2.set_xticks(self.ind)
self.ax2.set_xticklabels(self.categories, color="yellow")
self.ax2.tick_params(axis='y', colors='white')
self.ax2.legend()
self.canvasstat2.draw()
self.horizontalLayout_66.addWidget(self.canvasstat2)
self.conn.close()
#close center menu
self.ui.closeCenterMenuBtn.clicked.connect(lambda: self.ui.centerMenuContainer.collapseMenu())
#expand right menu size
self.ui.moreMenuBtn.clicked.connect(lambda: self.ui.rightMenuContainer.expandMenu())
self.ui.profileMenuBtn.clicked.connect(lambda: self.ui.rightMenuContainer.expandMenu())
#close right menu
self.ui.closeRightMenuBtn.clicked.connect(lambda: self.ui.rightMenuContainer.collapseMenu())
#close Notification
self.ui.closeNotificationBtn.clicked.connect(lambda: self.ui.popupNotificationContainer.collapseMenu())
#close Notification
self.ui.closeNotificationBtn.clicked.connect(lambda: self.ui.popupNotificationContainer.collapseMenu())
# Classification
self.ui.startClassificationBtn.clicked.connect(self.NodClassification)
#Patient research
self.ui.researchPatientBtn.clicked.connect(self.ResearchPatient)
##############################################################################################
# No modification is allowed in the table
self.ui.tableWidget.setEditTriggers(QtWidgets.QAbstractItemView.NoEditTriggers)
self.ui.tableWidget.setHorizontalHeaderLabels(["Patient ID", "Name", "Birth", "Wilaya", "Sex", "Allergies", "Smoking", "Medical history", "Cancer Family", "Email", "Phone"])
# Personnalisation du style des titres de colonnes
header_style = "::section { background-color: #333; color: white; }"
self.ui.tableWidget.horizontalHeader().setStyleSheet(header_style)
self.ui.label_addPName.hide()
self.ui.label_addPWilaya.hide()
self.ui.label_addPWilaya_2.hide()
self.ui.label_addPSexe.hide()
self.ui.label_addPAllergies.hide()
self.ui.label_addPSmoking.hide()
self.ui.label_addPCancerFamilly.hide()
self.ui.label_addPMedHist.hide()
self.ui.label_addPEmail.hide()
self.ui.label_addPNumber.hide()
self.ui.textNamePADD.hide()
self.ui.textWilayaPADD.hide()
self.ui.dateEditPADD.hide()
self.ui.textSexePADD.hide()
self.ui.textAllergiesPADD.hide()
self.ui.textSmokingPADD.hide()
self.ui.textCancerFamillyPADD.hide()
self.ui.textMedHistPADD.hide()
self.ui.textEmailPADD.hide()
self.ui.textNumberPADD.hide()
self.ui.tableWidget.hide()
self.ui.addPateintBtn.hide()
#* Ajout d une variable globale pour gerer le cas ou un pdf se cree si aucune consultation n a ete effectuee
self.GlobalStartClassification = 0
#!Add Patient
self.ui.addPateintBtn.clicked.connect(self.AddPatient)
#!Select a row from the table
self.ui.tableWidget.itemSelectionChanged.connect(self.handle_item_selection)
#! Choose patient
self.ui.choosePateintBtn.clicked.connect(self.PatientSelect)
#hide waiting
self.ui.label_waiting.setText("")
#Save report
self.ui.saveReportBtn.clicked.connect(self.saveReport)
# Show nodule
self.ui.showNoduleRBtn.clicked.connect(self.showNodule)
# Choose classification methode
self.ui.classificationMethodeBtn.clicked.connect(self.ChooseClassificationMethode)
#
self.ui.textBrowserGuide.setOpenExternalLinks(True)
self.ui.textBrowserGuide.append('<a href=https://drive.google.com/file/d/1hkQrMOivxnh7-qVpXAUndPckf9Svx9ts/view?usp=share_link>MethodesPdf</>')
self.ui.textBrowserGuidePDF.setOpenExternalLinks(True)
self.ui.textBrowserGuidePDF.append('<a href=https://drive.google.com/file/d/17CHbUR6hFuHHutq4315FIcD0YL-yEEI3/view?usp=sharing>______Guide_____</>')
#self.ui.textWilayaPADD.currentIndexChanged.connect(self.selection_changed)
if __name__ == '__main__':