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NEWS.md

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Changes Version 3.3 - Steffen Moritz

  • Fixed small bug with a unwanted print statement in linearRidge

Changes Version 3.2 - Steffen Moritz

  • Fixed issue with predict() function: Wrong results, when predicting the training data without newdata argument. When supplying them via newdata, everything seemed fine. (#16) Thanks to Mekala Sundaram for reporting the issue.

Changes Version 3.1 - Steffen Moritz

  • Fixes to remain on CRAN

  • GitHub Actions as CI Tool

Changes Version 2.7 until 3.0 - Steffen Moritz

  • Fixes related to autoconf (needed for passing new CRAN checks)

Changes Version 2.6 - Steffen Moritz

  • Readme update

  • Fixes to pass CRAN checks

Changes Version 2.5 - Dan Frankowski

  • Fix predict bug with factor variables

  • Add vcov.ridgeLinear

  • Add testthat tests

  • Changed documentation partially to roxygen2

Changes Version 2.4 - Steffen Moritz

  • bugfix in logisticRidge and linearRidge see: #2

  • bugfix to pass cran checks 'warning: missing template: HAVE_GSL_HEADER autoheader'

  • Updated Readme

Changes Version 2.3 - Steffen Moritz

  • Some fixed to remain on CRAN and comly with CRAN policy

  • Improved Description file

  • Changed NEWS file to markup document

Changes Version 2.2 - Steffen Moritz

  • Made package CRAN ready again

  • Created github repository for the package

  • Fixed warning using Wpendantic gcc

  • Adapted the DESCRIPTION file to latest CRAN requirements

  • Renamed CHANGELOG to NEWS

  • NEWS template update

  • Changes to .C Method registration

  • NAMESPACE fixes

Changes 2014-3-02 - Erika Cule

* Fixed layout of .Rd files

* Added deletion of Makevars to cleanup script

Changes 2012-9-27 - Erika Cule

* Flat text (.txt) data files were moved from ridge/data to ridge/inst/extdata 
(in the source, which becomes ridge/extdata in the installed package). The .txt files 
should be in inst/extdata because they files are used by the package examples 
  (albeit in not run sections), as described in Writing R Extensions 1.1.5 Data in packages.

* Some users were reporting problems installing the package on some Linux OS. configure 
  has been modified to fix this 
  problem.

Changes 2012-8-21 - Erika Cule

* Bug fix in src/commonFunctions.c

Changes 2012-8-21 - Erika Cule

* Added configure.ac so that package will install if GSL >= 1.14 is not available 
  (with linearRidgeGenotypes, logisticRidgeGenotypes, linearRidgeGenotypesPredict and 
  logisticRidgeGenotypesPredict disabled). 
  
* configure.ac detects whether openblas is available and if it is found, links to that. 
This speeds up computation. (http://xianyi.github.com/OpenBLAS/)

Changes 2012-7-19 Erika Cule

  • fixed a bug in linearRidge when scaling = "none"

  • added functions linearRidgeGenotypes and logisticRidgeGenotypes and their predicting counterparts linearRidgeGenotypesPredict and logisticRidgeGenotypespredict. These functions fit linear and logistic ridge regression models for genome-wide SNP data, optionally automatically choosing the ridge parameter

    • minor bug fix: "Intercept" now prints as "(Intercept)" (as is the case for lm and glm models)