nuclick

Nuclick and Classification Examples

This folder contains examples to run train and validate a nuclick and classification models. It also has notebooks to run inference over trained (monai-zoo) model.

1. Data

Training these model requires data. Some public available datasets which are used in the examples can be downloaded from ConSeP.

2. Questions and bugs

• For questions relating to the use of MONAI, please us our Discussions tab on the main repository of MONAI.
• For bugs relating to MONAI functionality, please create an issue on the main repository.
• For bugs relating to the running of a tutorial, please create an issue in this repository.

3. List of notebooks and examples

NuClick Interaction Model

Training

This notebook guides to train a NuClick model.

Inference

This notebook guides to segment a nuclei for given user click(s).

Nuclei Classification Model

Training

This notebook guides to train a classification model for certain nuclei types.

Inference

This notebook helps to infer classification model for a given Nulei.