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setup.py
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setup.py
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# Copyright 2011-2023 Biomedical Imaging Group Rotterdam, Departments of
# Medical Informatics and Radiology, Erasmus MC, Rotterdam, The Netherlands
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import sys
from setuptools.command.test import test as TestCommand
from setuptools import setup, find_packages
if sys.version_info < (3, 6):
sys.exit('Sorry, Python < 3.6 is not supported')
with open('requirements.txt', 'r') as fh:
_requires = fh.read().splitlines()
with open('README.rst', 'r') as fh:
_description = fh.read()
with open('version', 'r') as fh:
__version__ = fh.read().splitlines()[0]
with open('test_requirements.txt', 'r') as fh:
_tests_require = fh.read().splitlines()
with open('requirements-setup.txt', 'r') as fp:
setup_requirements = list(filter(bool, (line.strip() for line in fp)))
def scan_dir(path, prefix=None):
if prefix is None:
prefix = path
# Scan resources package for files to include
file_list = []
for root, dirs, files in os.walk(path):
# Strip this part as setup wants relative directories
root = root.replace(prefix, '')
root = root.lstrip('/\\')
for filename in files:
if filename[0:8] == '__init__':
continue
file_list.append(os.path.join(root, filename))
return file_list
# Determine the extra resources and scripts to pack
print('[setup.py] called with: {}'.format(' '.join(sys.argv)))
if hasattr(sys, 'real_prefix'):
print('[setup.py] Installing in virtual env {} (real prefix: {})'.format(sys.prefix, sys.real_prefix))
else:
print('[setup.py] Not inside a virtual env!')
# Set the entry point
entry_points = {
"console_scripts": [
"PREDICT = PREDICT.PREDICT:main",
]
}
# Determine the fastr config path
USER_DIR = os.path.expanduser(os.path.join('~', '.fastr'))
config_d = os.path.join(USER_DIR, 'config.d')
class NoseTestCommand(TestCommand):
def finalize_options(self):
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
# Run nose ensuring that argv simulates running nosetests directly
import nose
nose.run_exit(argv=['nosetests'])
here = os.path.abspath(os.path.dirname(__file__))
setup(
name='PREDICT',
version='3.1.17',
description='Predict: a Radiomics Extensive Digital Interchangable Classification Toolkit.',
long_description=_description,
url='https://github.com/Svdvoort/PREDICTFastr',
author='Martijn P. A. Starmans, Sebastian R. van der Voort',
author_email='m.starmans@erasmusmc.nl, s.vandervoort@erasmusmc.nl',
license='Apache License, Version 2.0',
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'Intended Audience :: Healthcare Industry',
'Intended Audience :: Information Technology',
'Intended Audience :: Education',
'License :: OSI Approved :: Apache Software License',
'Natural Language :: English',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3 :: Only',
'Topic :: Scientific/Engineering :: Information Analysis',
'Topic :: System :: Distributed Computing',
'Topic :: System :: Logging',
'Topic :: Utilities',
],
keywords='bioinformatics radiomics features',
packages=find_packages(exclude=['build', '_docs', 'templates']),
include_package_data=True,
package_data={'PREDICT': ['versioninfo']},
install_requires=_requires,
tests_require=_tests_require,
test_suite='nose.collector',
cmdclass={'test': NoseTestCommand},
entry_points=entry_points
# setup_requires=_requires
)