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Werkzeug = ">=2.0"

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async = ["asgiref (>=3.2)"]
dotenv = ["python-dotenv"]

[[package]]
name = "freezegun"
version = "1.1.0"
description = "Let your Python tests travel through time"
category = "main"
optional = true
python-versions = ">=3.5"

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python-dateutil = ">=2.7"

[[package]]
name = "frozendict"
version = "2.3.2"
description = "A simple immutable dictionary"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "future"
version = "0.18.2"
description = "Clean single-source support for Python 3 and 2"
category = "main"
optional = true
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "gitdb"
version = "4.0.9"
description = "Git Object Database"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
smmap = ">=3.0.1,<6"

[[package]]
name = "gitpython"
version = "3.1.26"
description = "GitPython is a python library used to interact with Git repositories"
category = "main"
optional = false
python-versions = ">=3.7"

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gitdb = ">=4.0.1,<5"
typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""}

[[package]]
name = "grandalf"
version = "0.7"
description = "Graph and drawing algorithms framework"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
pyparsing = "*"

[package.extras]
full = ["numpy", "ply"]

[[package]]
name = "gunicorn"
version = "20.1.0"
description = "WSGI HTTP Server for UNIX"
category = "main"
optional = true
python-versions = ">=3.5"

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eventlet = ["eventlet (>=0.24.1)"]
gevent = ["gevent (>=1.4.0)"]
setproctitle = ["setproctitle"]
tornado = ["tornado (>=0.2)"]

[[package]]
name = "humanfriendly"
version = "10.0"
description = "Human friendly output for text interfaces using Python"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

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pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""}
pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""}

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name = "humanize"
version = "4.0.0"
description = "Python humanize utilities"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}

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tests = ["freezegun", "pytest", "pytest-cov"]

[[package]]
name = "idna"
version = "3.3"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "imagesize"
version = "1.3.0"
description = "Getting image size from png/jpeg/jpeg2000/gif file"
category = "main"
optional = true
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "importlib-metadata"
version = "4.11.3"
description = "Read metadata from Python packages"
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optional = false
python-versions = ">=3.7"

[package.dependencies]
typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
zipp = ">=0.5"

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docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"]
perf = ["ipython"]
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]

[[package]]
name = "importlib-resources"
version = "5.4.0"
description = "Read resources from Python packages"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}

[package.extras]
docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"]

[[package]]
name = "iniconfig"
version = "1.1.1"
description = "iniconfig: brain-dead simple config-ini parsing"
category = "main"
optional = true
python-versions = "*"

[[package]]
name = "inject"
version = "4.3.1"
description = "Python dependency injection framework"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "isodate"
version = "0.6.1"
description = "An ISO 8601 date/time/duration parser and formatter"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
six = "*"

[[package]]
name = "isort"
version = "5.10.1"
description = "A Python utility / library to sort Python imports."
category = "main"
optional = true
python-versions = ">=3.6.1,<4.0"

[package.extras]
pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
requirements_deprecated_finder = ["pipreqs", "pip-api"]
colors = ["colorama (>=0.4.3,<0.5.0)"]
plugins = ["setuptools"]

[[package]]
name = "itsdangerous"
version = "2.1.2"
description = "Safely pass data to untrusted environments and back."
category = "main"
optional = true
python-versions = ">=3.7"

[[package]]
name = "jinja2"
version = "3.0.3"
description = "A very fast and expressive template engine."
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
MarkupSafe = ">=2.0"

[package.extras]
i18n = ["Babel (>=2.7)"]

[[package]]
name = "jinxed"
version = "1.1.0"
description = "Jinxed Terminal Library"
category = "main"
optional = true
python-versions = "*"

[package.dependencies]
ansicon = {version = "*", markers = "platform_system == \"Windows\""}

[[package]]
name = "lazy-object-proxy"
version = "1.7.1"
description = "A fast and thorough lazy object proxy."
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "lockfile"
version = "0.12.2"
description = "Platform-independent file locking module"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "lxml"
version = "4.8.0"
description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"

[package.extras]
cssselect = ["cssselect (>=0.7)"]
html5 = ["html5lib"]
htmlsoup = ["beautifulsoup4"]
source = ["Cython (>=0.29.7)"]

[[package]]
name = "markupsafe"
version = "2.1.1"
description = "Safely add untrusted strings to HTML/XML markup."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "marshmallow"
version = "3.14.1"
description = "A lightweight library for converting complex datatypes to and from native Python datatypes."
category = "main"
optional = false
python-versions = ">=3.6"

[package.extras]
dev = ["pytest", "pytz", "simplejson", "mypy (==0.910)", "flake8 (==4.0.1)", "flake8-bugbear (==21.9.2)", "pre-commit (>=2.4,<3.0)", "tox"]
docs = ["sphinx (==4.3.0)", "sphinx-issues (==1.2.0)", "alabaster (==0.7.12)", "sphinx-version-warning (==1.1.2)", "autodocsumm (==0.2.7)"]
lint = ["mypy (==0.910)", "flake8 (==4.0.1)", "flake8-bugbear (==21.9.2)", "pre-commit (>=2.4,<3.0)"]
tests = ["pytest", "pytz", "simplejson"]

[[package]]
name = "mccabe"
version = "0.6.1"
description = "McCabe checker, plugin for flake8"
category = "main"
optional = true
python-versions = "*"

[[package]]
name = "mistune"
version = "0.8.4"
description = "The fastest markdown parser in pure Python"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "msgpack"
version = "1.0.3"
description = "MessagePack (de)serializer."
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "multidict"
version = "6.0.2"
description = "multidict implementation"
category = "main"
optional = true
python-versions = ">=3.7"

[[package]]
name = "mypy"
version = "0.950"
description = "Optional static typing for Python"
category = "main"
optional = true
python-versions = ">=3.6"

[package.dependencies]
mypy-extensions = ">=0.4.3"
tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
typed-ast = {version = ">=1.4.0,<2", markers = "python_version < \"3.8\""}
typing-extensions = ">=3.10"

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dmypy = ["psutil (>=4.0)"]
python2 = ["typed-ast (>=1.4.0,<2)"]
reports = ["lxml"]

[[package]]
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version = "0.4.3"
description = "Experimental type system extensions for programs checked with the mypy typechecker."
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "ndg-httpsclient"
version = "0.5.1"
description = "Provides enhanced HTTPS support for httplib and urllib2 using PyOpenSSL"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.dependencies]
pyasn1 = ">=0.1.1"
PyOpenSSL = "*"

[[package]]
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description = "Python package for creating and manipulating graphs and networks"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
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developer = ["black (==21.5b1)", "pre-commit (>=2.12)"]
doc = ["sphinx (>=4.0,<5.0)", "pydata-sphinx-theme (>=0.6,<1.0)", "sphinx-gallery (>=0.9,<1.0)", "numpydoc (>=1.1)", "pillow (>=8.2)", "nb2plots (>=0.6)", "texext (>=0.6.6)"]
extra = ["lxml (>=4.5)", "pygraphviz (>=1.7)", "pydot (>=1.4.1)"]
test = ["pytest (>=6.2)", "pytest-cov (>=2.12)", "codecov (>=2.1)"]

[[package]]
name = "numpy"
version = "1.21.1"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "ordered-set"
version = "4.1.0"
description = "An OrderedSet is a custom MutableSet that remembers its order, so that every"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
dev = ["pytest", "black", "mypy"]

[[package]]
name = "owlrl"
version = "5.2.3"
description = "OWL-RL and RDFS based RDF Closure inferencing for Python"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
rdflib = ">=5.0.0"

[[package]]
name = "packaging"
version = "21.3"
description = "Core utilities for Python packages"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"

[[package]]
name = "pathspec"
version = "0.9.0"
description = "Utility library for gitignore style pattern matching of file paths."
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optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"

[[package]]
name = "patool"
version = "1.12"
description = "portable archive file manager"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "pep517"
version = "0.12.0"
description = "Wrappers to build Python packages using PEP 517 hooks"
category = "main"
optional = true
python-versions = "*"

[package.dependencies]
importlib_metadata = {version = "*", markers = "python_version < \"3.8\""}
tomli = {version = ">=1.1.0", markers = "python_version >= \"3.6\""}
zipp = {version = "*", markers = "python_version < \"3.8\""}

[[package]]
name = "pep8"
version = "1.7.1"
description = "Python style guide checker"
category = "main"
optional = true
python-versions = "*"

[[package]]
name = "persistent"
version = "4.9.0"
description = "Translucent persistent objects"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
cffi = {version = "*", markers = "platform_python_implementation == \"CPython\""}
"zope.interface" = "*"

[package.extras]
docs = ["sphinx", "repoze.sphinx.autointerface"]
test = ["zope.testrunner", "manuel"]

[[package]]
name = "pexpect"
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description = "Pexpect allows easy control of interactive console applications."
category = "main"
optional = true
python-versions = "*"

[package.dependencies]
ptyprocess = ">=0.5"

[[package]]
name = "pillow"
version = "9.0.1"
description = "Python Imaging Library (Fork)"
category = "main"
optional = true
python-versions = ">=3.7"

[[package]]
name = "platformdirs"
version = "2.5.2"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "main"
optional = true
python-versions = ">=3.7"

[package.extras]
docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]

[[package]]
name = "pluggy"
version = "1.0.0"
description = "plugin and hook calling mechanisms for python"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}

[package.extras]
dev = ["pre-commit", "tox"]
testing = ["pytest", "pytest-benchmark"]

[[package]]
name = "poetry-dynamic-versioning"
version = "0.14.1"
description = "Plugin for Poetry to enable dynamic versioning based on VCS tags"
category = "main"
optional = true
python-versions = ">=3.5,<4.0"

[package.dependencies]
dunamai = ">=1.11.1,<2.0.0"
jinja2 = {version = ">=2.11.1,<4", markers = "python_version >= \"3.6\" and python_version < \"4.0\""}
tomlkit = ">=0.4"

[[package]]
name = "poetry-lock-package"
version = "0.4.4"
description = "Poetry lock package generator"
category = "dev"
optional = false
python-versions = ">=3.6.2,<4.0.0"

[package.dependencies]
importlib-metadata = {version = ">=0.22", markers = "python_version < \"3.8\""}
toml = ">=0.10.1,<0.11.0"

[[package]]
name = "portalocker"
version = "2.4.0"
description = "Wraps the portalocker recipe for easy usage"
category = "main"
optional = false
python-versions = ">=3.5"

[package.dependencies]
pywin32 = {version = ">=226", markers = "platform_system == \"Windows\""}

[package.extras]
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redis = ["redis"]
tests = ["pytest (>=5.4.1)", "pytest-cov (>=2.8.1)", "sphinx (>=3.0.3)", "pytest-mypy (>=0.8.0)", "redis"]

[[package]]
name = "prefixed"
version = "0.3.2"
description = "Prefixed alternative numeric library"
category = "main"
optional = true
python-versions = "*"

[[package]]
name = "prettytable"
version = "2.5.0"
description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
wcwidth = "*"

[package.extras]
tests = ["pytest", "pytest-cov", "pytest-lazy-fixture"]

[[package]]
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description = "A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)"
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optional = false
python-versions = "*"

[package.dependencies]
lxml = "*"
networkx = "*"
python-dateutil = "*"
rdflib = ">=4.2.1"
six = ">=1.9.0"

[package.extras]
dot = ["pydot (>=1.2.0)"]

[[package]]
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description = "Cross-platform lib for process and system monitoring in Python."
category = "main"
optional = false
python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.extras]
test = ["ipaddress", "mock", "unittest2", "enum34", "pywin32", "wmi"]

[[package]]
name = "ptvsd"
version = "4.3.2"
description = "Remote debugging server for Python support in Visual Studio and Visual Studio Code"
category = "main"
optional = true
python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"

[[package]]
name = "ptyprocess"
version = "0.7.0"
description = "Run a subprocess in a pseudo terminal"
category = "main"
optional = true
python-versions = "*"

[[package]]
name = "py"
version = "1.11.0"
description = "library with cross-python path, ini-parsing, io, code, log facilities"
category = "main"
optional = true
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
name = "py-tes"
version = "0.4.2"
description = "Library for communicating with the GA4GH Task Execution API"
category = "main"
optional = true
python-versions = ">=2.7, <4"

[package.dependencies]
attrs = ">=17.4.0"
future = ">=0.16.0"
python-dateutil = ">=2.6.1"
requests = ">=2.18.1"

[[package]]
name = "pyasn1"
version = "0.4.8"
description = "ASN.1 types and codecs"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "pycodestyle"
version = "2.7.0"
description = "Python style guide checker"
category = "main"
optional = true
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "pycparser"
version = "2.21"
description = "C parser in Python"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "pydocstyle"
version = "6.1.1"
description = "Python docstring style checker"
category = "main"
optional = true
python-versions = ">=3.6"

[package.dependencies]
snowballstemmer = "*"

[package.extras]
toml = ["toml"]

[[package]]
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version = "1.4.2"
description = "Python interface to Graphviz's Dot"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.dependencies]
pyparsing = ">=2.1.4"

[[package]]
name = "pyenchant"
version = "3.2.2"
description = "Python bindings for the Enchant spellchecking system"
category = "main"
optional = true
python-versions = ">=3.5"

[[package]]
name = "pyflakes"
version = "2.3.1"
description = "passive checker of Python programs"
category = "main"
optional = true
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "pygments"
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description = "Pygments is a syntax highlighting package written in Python."
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optional = false
python-versions = ">=3.6"

[[package]]
name = "pyjwt"
version = "2.3.0"
description = "JSON Web Token implementation in Python"
category = "main"
optional = false
python-versions = ">=3.6"

[package.extras]
crypto = ["cryptography (>=3.3.1)"]
dev = ["sphinx", "sphinx-rtd-theme", "zope.interface", "cryptography (>=3.3.1)", "pytest (>=6.0.0,<7.0.0)", "coverage[toml] (==5.0.4)", "mypy", "pre-commit"]
docs = ["sphinx", "sphinx-rtd-theme", "zope.interface"]
tests = ["pytest (>=6.0.0,<7.0.0)", "coverage[toml] (==5.0.4)"]

[[package]]
name = "pyld"
version = "2.0.3"
description = "Python implementation of the JSON-LD API"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
cachetools = "*"
frozendict = "*"
lxml = "*"

[package.extras]
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cachetools = ["cachetools"]
frozendict = ["frozendict"]
requests = ["requests"]

[[package]]
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description = "Python wrapper module around the OpenSSL library"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
cryptography = ">=35.0"

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test = ["flaky", "pretend", "pytest (>=3.0.1)"]

[[package]]
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description = "pyparsing module - Classes and methods to define and execute parsing grammars"
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optional = false
python-versions = ">=3.6.8"

[package.extras]
diagrams = ["railroad-diagrams", "jinja2"]

[[package]]
name = "pyreadline"
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optional = false
python-versions = "*"

[[package]]
name = "pyreadline3"
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description = "A python implementation of GNU readline."
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optional = false
python-versions = "*"

[[package]]
name = "pyshacl"
version = "0.17.2"
description = "Python SHACL Validator"
category = "main"
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python-versions = ">=3.7.0,<4.0.0"

[package.dependencies]
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prettytable = ">=2.2.1,<3.0.0"
rdflib = ">=6.0.0,<7"

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dev-type-checking = ["mypy (>=0.800,<0.801)", "types-setuptools"]
js = ["pyduktape2 (>=0.4.1,<0.5.0)"]
jsonld = ["rdflib-jsonld (>=0.4.0,<0.6)"]

[[package]]
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version = "0.8.1"
description = "Simple VTXXX-compatible terminal emulator."
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optional = true
python-versions = "*"

[package.dependencies]
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pytest = ">=3.5"

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py = "*"
pytest = ">=3.10"

[[package]]
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pytest = ">=2.4.2"
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[[package]]
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python-versions = ">=3.5"

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pytest = ">=3.5.0"
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[[package]]
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description = "pytest plugin to abort hanging tests"
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python-versions = ">=3.6"

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pytest = ">=5.0.0"

[[package]]
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python-versions = ">=3.6"

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pytest = ">=6.2.0"
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setproctitle = ["setproctitle"]
testing = ["filelock"]

[[package]]
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python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"

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[[package]]
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optional = true
python-versions = ">=3.5"

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cli = ["click (>=5.0)"]

[[package]]
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python-versions = "*"

[[package]]
name = "python-gitlab"
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requests-toolbelt = ">=0.9.1"

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yaml = ["PyYaml (>=5.2)"]

[[package]]
name = "pytz"
version = "2022.1"
description = "World timezone definitions, modern and historical"
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optional = true
python-versions = "*"

[[package]]
name = "pywin32"
version = "227"
description = "Python for Window Extensions"
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python-versions = "*"

[[package]]
name = "pyyaml"
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description = "YAML parser and emitter for Python"
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[[package]]
name = "pyzmq"
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py = {version = "*", markers = "implementation_name == \"pypy\""}

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[package.dependencies]
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pyparsing = "*"

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[[package]]
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description = "Python client for Redis database and key-value store"
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python-versions = ">=3.6"

[package.dependencies]
deprecated = "*"

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[[package]]
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description = "Python HTTP for Humans."
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"

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requests = ">=2.0.1,<3.0.0"

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[[package]]
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pycodegen = ["black"]

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blinker = {version = ">=1.1", optional = true, markers = "extra == \"flask\""}
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[[package]]
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