/
datasets_provenance.py
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/
datasets_provenance.py
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# -*- coding: utf-8 -*-
#
# Copyright 2017-2021 - Swiss Data Science Center (SDSC)
# A partnership between École Polytechnique Fédérale de Lausanne (EPFL) and
# Eidgenössische Technische Hochschule Zürich (ETHZ).
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Datasets Provenance."""
from datetime import datetime
from typing import TYPE_CHECKING, List, Optional
from uuid import UUID
from renku.core import errors
from renku.core.management.command_builder.command import inject
from renku.core.management.interface.dataset_gateway import IDatasetGateway
from renku.core.utils import communication
if TYPE_CHECKING:
from renku.core.models.dataset import Dataset, DatasetTag
from renku.core.models.provenance.agent import Person
class DatasetsProvenance:
"""A set of datasets."""
dataset_gateway = inject.attr(IDatasetGateway)
@property
def datasets(self) -> List["Dataset"]:
"""Return an iterator of datasets."""
return self.dataset_gateway.get_all_active_datasets()
def get_by_id(self, id: str, immutable: bool = False) -> Optional["Dataset"]:
"""Return a dataset by its id."""
from renku.core.models.dataset import Dataset
try:
dataset = self.dataset_gateway.get_by_id(id)
except errors.ObjectNotFoundError:
pass
else:
assert isinstance(dataset, Dataset)
if not dataset.immutable or immutable:
return dataset
return dataset.copy()
return None
def get_by_name(self, name: str, immutable: bool = False, strict: bool = False) -> Optional["Dataset"]:
"""Return a dataset by its name."""
dataset = self.dataset_gateway.get_by_name(name)
if not dataset:
if strict:
raise errors.DatasetNotFound(name=name)
return None
if not dataset.immutable or immutable:
return dataset
return dataset.copy()
def get_provenance_tails(self):
"""Return the provenance for all datasets."""
return self.dataset_gateway.get_provenance_tails()
def get_previous_version(self, dataset: "Dataset") -> Optional["Dataset"]:
"""Return the previous version of a dataset if any."""
if dataset.is_derivation():
return self.get_by_id(dataset.derived_from.url_id) # type: ignore
return None
def add_or_update(self, dataset: "Dataset", date: Optional[datetime] = None, creator: Optional["Person"] = None):
"""Add/update a dataset according to its new content.
NOTE: This functions always mutates the dataset.
"""
from renku.core.models.dataset import Dataset
assert isinstance(dataset, Dataset)
# NOTE: Dataset's name never changes, so, we use it to detect if a dataset should be mutated.
current_dataset = self.get_by_name(dataset.name)
if current_dataset:
assert (
not current_dataset.is_removed()
), f"Adding/Updating a removed dataset '{dataset.name}:{dataset.identifier}'"
dataset.update_files_from(current_dataset, date=date)
# NOTE: Always mutate a dataset to make sure an old identifier is not reused
dataset.derive_from(current_dataset, creator=creator)
else:
assert (
dataset.derived_from is None
), f"Parent dataset {dataset.derived_from} not found for '{dataset.name}:{dataset.identifier}'"
self.dataset_gateway.add_or_remove(dataset)
def remove(self, dataset, date: datetime = None, creator: "Person" = None):
"""Remove a dataset."""
from renku.core.models.dataset import Dataset
assert isinstance(dataset, Dataset)
# NOTE: Dataset's name never changes, so, we use it to detect if a dataset should be mutated.
current_dataset = self.dataset_gateway.get_by_name(dataset.name)
if current_dataset:
assert not current_dataset.is_removed(), f"Removing a removed dataset '{dataset.name}:{dataset.identifier}'"
# NOTE: We always assign a new identifier to make sure an old identifier is not reused
dataset.derive_from(current_dataset, creator=creator)
else:
assert (
dataset.derived_from is None
), f"Parent dataset {dataset.derived_from} not found for '{dataset.name}:{dataset.identifier}'"
dataset.remove(date)
self.dataset_gateway.add_or_remove(dataset)
def update_during_migration(
self,
dataset: "Dataset",
commit_sha: str,
date: Optional[datetime] = None,
tags: Optional[List["DatasetTag"]] = None,
remove=False,
replace=False,
preserve_identifiers: bool = False,
):
"""Add, update, remove, or replace a dataset in migration."""
from renku.core.models.dataset import Dataset
assert isinstance(dataset, Dataset)
assert not (remove and replace), "Cannot remove and replace"
def update_dataset(existing, new) -> "Dataset":
"""Update existing dataset with the new dataset metadata."""
existing.update_metadata_from(new, exclude=["date_created", "derived_from", "same_as"])
existing.dataset_files = new.dataset_files
return existing
# NOTE: Dataset's name never changes, so, we use it to detect if a dataset should be mutated.
current_dataset = self.get_by_name(dataset.name, immutable=True)
new_identifier = self._create_dataset_identifier(commit_sha, dataset.identifier)
dataset_with_same_id = self.get_by_id(dataset.id, immutable=True)
if dataset_with_same_id and preserve_identifiers:
dataset.update_files_from(dataset_with_same_id, date=date)
dataset = update_dataset(existing=dataset_with_same_id, new=dataset)
elif current_dataset:
dataset.update_files_from(current_dataset, date=date)
if replace:
# NOTE: Copy metadata to the current dataset
dataset = update_dataset(existing=current_dataset, new=dataset)
else:
identifier = new_identifier if dataset_with_same_id else dataset.identifier
date_created = date if dataset_with_same_id else dataset.date_created
dataset.derive_from(current_dataset, creator=None, identifier=identifier, date_created=date_created)
else:
if remove:
communication.warn(f"Deleting non-existing dataset '{dataset.name}'")
if dataset.derived_from:
communication.warn(
f"Parent dataset {dataset.derived_from} not found for '{dataset.name}:{dataset.identifier}'"
)
dataset.derived_from = None
# NOTE: This happens in migrations of broken projects
if dataset_with_same_id:
dataset.replace_identifier(new_identifier)
if remove:
dataset.remove()
else:
self._process_dataset_tags(dataset, tags)
self.dataset_gateway.add_or_remove(dataset)
@staticmethod
def _create_dataset_identifier(commit_sha: str, identifier: str) -> str:
uuid = f"{commit_sha[:20]}{identifier[-12:]}"
return UUID(uuid).hex
def get_all_tags(self, dataset: "Dataset") -> List["DatasetTag"]:
"""Return the list of all tags for a dataset."""
return self.dataset_gateway.get_all_tags(dataset)
def add_tag(self, dataset: "Dataset", tag: "DatasetTag"):
"""Add a tag from a dataset."""
self.dataset_gateway.add_tag(dataset, tag)
def remove_tag(self, dataset: "Dataset", tag: "DatasetTag"):
"""Remove a tag from a dataset."""
self.dataset_gateway.remove_tag(dataset, tag)
def _process_dataset_tags(self, dataset: "Dataset", tags: Optional[List["DatasetTag"]]):
from renku.core.models.dataset import DatasetTag, Url
if not tags:
return
current_tag_names = [t.name for t in self.get_all_tags(dataset)]
for tag in tags:
if tag.name in current_tag_names:
continue
tag = DatasetTag(
dataset_id=Url(url_id=dataset.id),
date_created=tag.date_created,
description=tag.description,
name=tag.name,
)
self.add_tag(dataset, tag)