/
KG-DWSIM_EnzML_ELN.owl
1971 lines (1662 loc) · 113 KB
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KG-DWSIM_EnzML_ELN.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xml:base="https://w3id.org/nfdi4cat"
xmlns="https://w3id.org/nfdi4cat#"
xmlns:core="http://www.w3.org/2004/02/skos/core#"
xmlns:cheb="http://purl.obolibrary.org/obo/chebi/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:meta="http://w3id.org/nfdi4ing/metadata4ing#">
<owl:Ontology rdf:about="https://w3id.org/nfdi4cat">
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/go/releases/2023-11-15/go.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-08-18/ro.owl"/>
<owl:imports rdf:resource="https://nfdi4ing.pages.rwth-aachen.de/metadata4ing/metadata4ing/ontology.xml"/>
<owl:imports rdf:resource="https://raw.githubusercontent.com/EBI-BioModels/SBO/master/SBO_OWL.owl"/>
<rdfs:comment xml:lang="en">Systems Biology Ontology, OWL export generated by SBO Browser (http://www.ebi.ac.uk/sbo/)</rdfs:comment>
<rdfs:label xml:lang="en">Generated: 03:11:2021 07:00</rdfs:label>
<owl:versionInfo>28:08:2021 03:13</owl:versionInfo>
</owl:Ontology>
<owl:ObjectProperty rdf:about="http://biomodels.net/SBO/part_of">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label>part of</rdfs:label>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002224">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasPart">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:inverseOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#isPartOf"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<core:prefLabel>has part</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002230">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002233"/>
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002234"/>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#NextUnitOperationModule">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UOM_Output"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<core:prefLabel>next unit operation module</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObject"/>
<core:prefLabel>has mandatory metadata object</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasChemicalMaterial">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialStaged"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterial"/>
<core:prefLabel>involves chemical material</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasChemicalMaterialInput">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002233"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialInput"/>
<core:prefLabel>has chemical material input</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasChemicalMaterialOutput">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002234"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UOM_Output"/>
<core:prefLabel>has chemical material output</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasChemicalMaterialState">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialStaged"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysicalMaterialState"/>
<core:prefLabel>has physical material state</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObject">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<owl:inverseOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#isMetadataObjectOf"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#Metadata"/>
<core:prefLabel>has metadata object</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#isMetadataObjectOf">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#Metadata"/>
<core:prefLabel>is metadata object of</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectOptional">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObject"/>
<core:prefLabel>has optional metadata object</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#isPartOf">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasProcessingModule">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObject"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysChemResearchStep"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysChemProcessingModule"/>
<core:prefLabel>has processing module</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasUnitOperation">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperation"/>
<core:prefLabel>involves unit operation</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#lastUnitOperationModule">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UOM_Input"/>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<core:prefLabel>last unit operation module</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#storesChemicalMaterial">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataObjectMandatory"/>
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
<rdfs:domain>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperationModule"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasUnitOperation"/>
<owl:someValuesFrom rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UO_Storage"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterial"/>
<core:prefLabel>stores chemical material</core:prefLabel>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://www.w3.org/ns/dcat#inSeries">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#isPartOf"/>
</owl:ObjectProperty>
<owl:ObjectProperty rdf:about="http://xmlns.com/foaf/0.1/member">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasPart"/>
</owl:ObjectProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#amount">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialInput"/>
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialOutput"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimple"/>
<core:prefLabel>has mandatory simple metadata</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#commentOnMaterialState">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysicalMaterialState"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<core:prefLabel>comment on material state</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#fluidRate">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialInput_CF"/>
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#ChemicalMaterialOutput_CF"/>
<rdf:Description rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#UO_Transfer"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<core:prefLabel>fluid rate</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasAggregateState">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysicalMaterialState"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimple">
<core:prefLabel>has simple metadata</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleOptional">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimple"/>
<core:prefLabel>has optional simple metadata</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasNProcessingModules">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysChemResearchStep"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/>
<core:prefLabel>has number of processing modules</core:prefLabel>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#hasPhase">
<rdfs:subPropertyOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#hasMetadataSimpleMandatory"/>
<rdfs:domain rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#PhysicalMaterialState"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
</owl:DatatypeProperty>
<owl:DatatypeProperty rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#isPowder">
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<core:prefLabel>continuous flow chemical material output</core:prefLabel>
</owl:Class>
<owl:Class rdf:about="http://www.nfdi.org/nfdi4cat/ontochem#UO_Transfer">
<rdfs:subClassOf rdf:resource="http://www.nfdi.org/nfdi4cat/ontochem#UnitOperation"/>
<core:prefLabel>unit operation transfer</core:prefLabel>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000000">
<rdfs:comment>Representation of an entity used in a systems biology knowledge reconstruction, such as a model, pathway, network.</rdfs:comment>
<rdfs:label>systems biology representation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000003">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000000"/>
<rdfs:comment>The function of a physical or conceptual entity, that is its role, in the execution of an event or process.</rdfs:comment>
<rdfs:label>participant role</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000010">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000003"/>
<rdfs:comment>Substance consumed by a chemical reaction. Reactants react with each other to form the products of a chemical reaction. In a chemical equation the Reactants are the elements or compounds on the left hand side of the reaction equation. A reactant can be consumed and produced by the same reaction, its global quantity remaining unchanged.</rdfs:comment>
<rdfs:label>reactant</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000011">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000003"/>
<rdfs:comment>Substance that is produced in a reaction. In a chemical
equation the Products are the elements or compounds on the right hand side
of the reaction equation. A product can be produced and consumed by the
same reaction, its global quantity remaining unchanged.</rdfs:comment>
<rdfs:label>product</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000013">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000459"/>
<rdfs:comment>Substance that accelerates the velocity of a chemical reaction without itself being consumed or transformed. This effect is achieved by lowering the free energy of the transition state.</rdfs:comment>
<rdfs:label>catalyst</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000459">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000019"/>
<rdfs:comment>Synonym: activator </rdfs:comment>
<rdfs:label>stimulator</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000015">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000010"/>
<rdfs:comment>Molecule which is acted upon by an enzyme. The substrate binds with the enzyme's active site, and the enzyme catalyzes a chemical reaction involving the substrate.</rdfs:comment>
<rdfs:label>substrate</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000019">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000003"/>
<rdfs:comment>Substance that changes the velocity of a process without
itself being consumed or transformed by the reaction.</rdfs:comment>
<rdfs:label>modifier</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000020">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000019"/>
<rdfs:comment>Substance that decreases the probability of a chemical reaction without itself being consumed or transformed by the reaction.</rdfs:comment>
<rdfs:label>inhibitor</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000021">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000459"/>
<rdfs:comment>Synonym: activator </rdfs:comment>
<rdfs:label>potentiator</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000167">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000375"/>
<rdfs:comment>An event involving one or more physical entities that modifies the structure, location or free energy of at least one of the participants.</rdfs:comment>
<rdfs:label>biochemical or transport reaction</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000375">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000000"/>
<rdfs:comment>A sequential series of actions, motions, or occurrences, such as chemical reactions, that affect one or more entities in a phenomenologically characteristic manner.</rdfs:comment>
<rdfs:label>process</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000176">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000167"/>
<rdfs:comment>An event involving one or more chemical entities that modifies the electrochemical structure of at least one of the participants.
</rdfs:comment>
<rdfs:label>biochemical reaction</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000177">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Synonym: association </rdfs:comment>
<rdfs:label>non-covalent binding</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000178">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000182"/>
<rdfs:comment>Rupture of a covalent bond resulting in the conversion of one physical entity into several physical entities.</rdfs:comment>
<rdfs:label>cleavage</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000182">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Biochemical reaction that results in the modification of some covalent bonds.</rdfs:comment>
<rdfs:label>conversion</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000179">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Complete disappearance of a physical entity.</rdfs:comment>
<rdfs:label>degradation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000180">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Transformation of a non-covalent complex that results in the formation of several independent biochemical entities</rdfs:comment>
<rdfs:label>dissociation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000181">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Biochemical reaction that does not result in the modification of covalent bonds of reactants, but rather modifies the conformation of some reactants, that is the relative position of their atoms in space.</rdfs:comment>
<rdfs:label>conformational transition</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000200">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Chemical process in which atoms have their oxidation number (oxidation state) changed.</rdfs:comment>
<rdfs:label>redox reaction</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000201">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000200"/>
<rdfs:comment>Chemical process during which a molecular entity loses electrons.</rdfs:comment>
<rdfs:label>oxidation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000202">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000200"/>
<rdfs:comment>Chemical process in which a molecular entity gain electrons.</rdfs:comment>
<rdfs:label>reduction</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000206">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000020"/>
<rdfs:comment>Substance that decreases the probability of a chemical reaction, without itself being consumed or transformed by the reaction, by stericaly hindering the interaction between reactants.</rdfs:comment>
<rdfs:label>competitive inhibitor</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000207">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000020"/>
<rdfs:comment>Substance that decreases the probability of a chemical reaction, without itself being consumed or transformed by the reaction, and without sterically hindering the interaction between reactants. </rdfs:comment>
<rdfs:label>non-competitive inhibitor</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000208">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Chemical reaction where a proton is given by a compound, the acid, to another one, the base (Brønsted-Lowry definition). An alternative, more general, definition is a reaction where a compound, the base, gives a pair of electrons to another, the acid (Lewis definition).</rdfs:comment>
<rdfs:label>acid-base reaction</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000209">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>Ionization is the physical process of converting an atom or molecule into an ion by changing the difference between the number of protons and electrons. </rdfs:comment>
<rdfs:label>ionisation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000210">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000182"/>
<rdfs:comment>Covalent reaction that results in the addition of a chemical group on a molecule.</rdfs:comment>
<rdfs:label>addition of a chemical group</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000211">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000182"/>
<rdfs:comment>Covalent reaction that results in the removal of a chemical group from a molecule.</rdfs:comment>
<rdfs:label>removal of a chemical group</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000212">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000208"/>
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a proton (H+) to a chemical entity.</rdfs:comment>
<rdfs:label>protonation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000213">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000208"/>
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000211"/>
<rdfs:comment>Removal of a proton (hydrogen ion H+) from a chemical entity.</rdfs:comment>
<rdfs:label>deprotonation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000214">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a methyl group (-CH3) to a chemical entity.</rdfs:comment>
<rdfs:label>methylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000215">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of an acetyl group (-COCH3) to a chemical entity.</rdfs:comment>
<rdfs:label>acetylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000216">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a phosphate group (-H2PO4) to a chemical entity.</rdfs:comment>
<rdfs:label>phosphorylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000217">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a saccharide group to a chemical entity.</rdfs:comment>
<rdfs:label>glycosylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000218">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a palmitoyl group (CH3-[CH2]14-CO-) to a chemical entity.</rdfs:comment>
<rdfs:label>palmitoylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000219">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of a myristoyl (CH3-[CH2]12-CO-) to a chemical entity.</rdfs:comment>
<rdfs:label>myristoylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000220">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Synonym: sulphation </rdfs:comment>
<rdfs:label>sulfation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000221">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Synonym: isoprenylation </rdfs:comment>
<rdfs:label>prenylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000222">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000221"/>
<rdfs:comment>Addition of a farnesyl group (CH2-CH=C(CH3)-CH2-CH2-CH=C(CH3)-CH2-CH2-CH=C(CH3)2) to a chemical entity.</rdfs:comment>
<rdfs:label>farnesylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000223">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000221"/>
<rdfs:comment>Addition of a geranylgeranyl group (CH2-CH=C(CH3)-CH2-CH2-CH=C(CH3)-CH2-CH2-CH=C(CH3)-CH2-CH2-CH=C(CH3)2) to a chemical entity.</rdfs:comment>
<rdfs:label>geranylgeranylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000224">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Covalent linkage to the protein ubiquitin. </rdfs:comment>
<rdfs:label>ubiquitination</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000233">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000210"/>
<rdfs:comment>Addition of an hydroxyl group (-OH) to a chemical entity. </rdfs:comment>
<rdfs:label>hydroxylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000289">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000003"/>
<rdfs:comment>Logical or physical subset of the event space that contains pools, that is sets of participants considered identical when it comes to the event they are involved into. A compartment can have any number of dimensions, including 0, and be of any size including null.</rdfs:comment>
<rdfs:label>functional compartment</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000330">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000211"/>
<rdfs:comment>Removal of a phosphate group (-H2PO4) from a chemical entity. </rdfs:comment>
<rdfs:label>dephosphorylation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000336">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000010"/>
<rdfs:comment>Entity participating in a physical or functional interaction.</rdfs:comment>
<rdfs:label>interactor</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000376">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000178"/>
<rdfs:comment>Decomposition of a compound by reaction with water, where the hydroxyl and H groups are incorporated into different products</rdfs:comment>
<rdfs:label>hydrolysis</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000377">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000176"/>
<rdfs:comment>A reaction in which the principal reactant and principal product are isomers of each other</rdfs:comment>
<rdfs:label>isomerisation</rdfs:label>
</owl:Class>
<owl:Class rdf:about="http://biomodels.net/SBO/SBO_0000399">
<rdfs:subClassOf rdf:resource="http://biomodels.net/SBO/SBO_0000211"/>