Merge pull request #50 from TUW-GEO/develop

Update pyscaffold v3.2.3

.coveragerc

@@ -1,8 +1,13 @@
 # .coveragerc to control coverage.py
 [run]
 branch = True
-source = pynetcf
-omit = */_version.py
+source = pynetCF
+# omit = bad_file.py
+
+[paths]
+source =
+    src/
+    */site-packages/
 
 [report]
 # Regexes for lines to exclude from consideration

.gitignore

@@ -3,39 +3,48 @@
 *.py[cod]
 *.so
 *.cfg
+!.isort.cfg
 !setup.cfg
 *.orig
 *.log
 *.pot
 __pycache__/*
 .cache/*
 .*.swp
+*/.ipynb_checkpoints/*
+.DS_Store
 
 # Project files
 .ropeproject
 .project
 .pydevproject
 .settings
 .idea
+tags
 
 # Package files
 *.egg
+*.eggs/
 .installed.cfg
 *.egg-info
-*.eggs
 
 # Unittest and coverage
 htmlcov/*
 .coverage
 .tox
 junit.xml
 coverage.xml
+.pytest_cache/
 
 # Build and docs folder/files
 build/*
 dist/*
 sdist/*
+docs/api/*
 docs/_rst/*
 docs/_build/*
 cover/*
 MANIFEST
+
+# Per-project virtualenvs
+.venv*/

.travis.yml

@@ -4,19 +4,15 @@ notifications:
   email: false
 python:
   # We don't actually use the Travis Python, but this keeps it organized.
-  - "2.7"
-  - "3.5"
   - "3.6"
+  - "3.7"
+  - "3.8"
 install:
   # You may want to periodically update this, although the conda update
   # conda line below will keep everything up-to-date.  We do this
   # conditionally because it saves us some downloading if the version is
   # the same.
-  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
-      wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
-    else
-      wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
-    fi
+  - wget http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
   - bash miniconda.sh -b -p $HOME/miniconda
   - export PATH="$HOME/miniconda/bin:$PATH"
   - hash -r

AUTHORS.rst

@@ -1,6 +1,6 @@
-==========
-Developers
-==========
+============
+Contributors
+============
 
-* Christoph Paulik <christoph.paulik@geo.tuwien.ac.at>
 * Sebastian Hahn <sebastian.hahn@geo.tuwien.ac.at>
+* Christoph Paulik <cpaulik@vandersat.com>

changes.md → CHANGELOG.rst

@@ -1,94 +1,138 @@
-## v0.1.19 - 2019-01-08
+=========
+Changelog
+=========
+
+Version 0.2.0
+=============
+
+- Package no longer Python 2.7 compatible
+- Update pyscaffold v3.2.3
+- Remove build_script and changes.md
+- Update environment.yml
+- Package name changed from pynetCF to pynetcf
+- Updating travis settings
+
+Version 0.1.19
+==============
 
 - Update readme.
 - Remove unnecessary dimensions while reading point data.
 - Pin squinx version to fix rtd
 - Update netcdf4 requirement to v1.4.2
 
-## v0.1.18 - 2018-03-20
+Version 0.1.18
+==============
 
 - Update installation to pyscaffold 2.5.x to fix https://github.com/blue-yonder/pyscaffold/issues/148
 - Restrict netcdf4 package to versions <=1.2.8 because of https://github.com/Unidata/netcdf4-python/issues/784
 
-## v0.1.17 - 2017-08-22
+Version 0.1.17
+==============
 
 - Allow writing and reading of PointData in append mode.
 - Set default filenames for GriddedPointData to include .nc ending.
 
-## v0.1.16 - 2017-07-07
+Version 0.1.16
+==============
 
 - Translate RuntimeError of older versions of the netCDF4 library to IOError.
 - Avoid race conditions when creating directories for new files.
 
-## v0.1.15 - 2017-06-20
+Version 0.1.15
+==============
 
-- Fix bug that lost the datatype during writing of timeseries with pandas > 0.17.1
+- Fix bug that lost the datatype during writing of timeseries with
+  pandas > 0.17.1
 - Fix Python 3 compability.
 
-## v0.1.14 - 2017-06-20
+Version 0.1.14
+==============
 
-- fix bug that read the wrong timeseries if a non existing location id was given.
-- fix bug when reading not completely filled files in read_bulk mode in contigous ragged.
+- fix bug that read the wrong timeseries if a non existing location id was
+  given.
+- fix bug when reading not completely filled files in read_bulk mode in
+  contigous ragged.
 
-## v0.1.13 - 2017-05-02
+Version 0.1.13
+==============
 
 - Catch RuntimeError and IOError to be compatible with older netCDF4 versions.
 - Fix compression of variables in point_data.
 
-## v0.1.12 - 2017-04-05
+Version 0.1.12
+==============
 
 - IndexedRaggedTs are now compatible with numpy record arrays and dictionaries.
 
-## v0.1.11 - 2017-04-03
+Version 0.1.11
+==============
 
 - IndexedRaggedTs.write_ts can now write data for multiple grid points at once.
 - Add interface to write a complete cell to GriddedNcIndexedRaggedTs
 
-## v0.1.10 - 2017-01-19
+Version 0.1.10
+==============
 
 - No changes in functionality
 - Fix setup.py for correct installation
 
-## v0.1.9 - 2017-01-19
+Version 0.1.9
+=============
+
 - Fix n_loc bug
 - Add recarray for point data
 - Excluding pandas==0.19.0
 
-## v0.1.8 - 2016-07-18
+Version 0.1.8
+=============
+
 - Deprecate pynetcf.time_series.GriddedTs please use
   pynetcf.time_series.GriddedNcTs in the future. Be aware that the __init__
   arguments have changed slightly to path, grid, ioclass.
 
-## v0.1.7 - 2016-04-12
+Version 0.1.7
+=============
+
 - Add support of read/write netCDF point data following CF conventions
 - Add support for disabling automatic masking during reading. Useful if the data
   has fill values but needs to be scaled to a datatype that does not support NaN
   values.
 
-## v0.1.6 - 2016-02-03
+Version 0.1.6
+=============
+
 - Add support for disabling automatic scaling in base netCDF4 library.
 - Add support for dtype conversion before scaling and offset.
 
-## v0.1.5 - 2016-01-27
+Version 0.1.5
+=============
+
 - Add classes for gridded datasets based on pygeobase
 - improve test coverage
 - make compatible with newest netCDF4 releases
 - support read_bulk keyword for all dataset types
 
-## v0.1.4 - 2015-11-04
+Version 0.1.4
+=============
+
 - fix open/closing of netCDF file
 
-## v0.1.2 - 2015-08-04
+Version 0.1.2
+=============
+
 - fixed issue #9
 
-## v0.1.3 - 2015-08-10
-- fixed issue #10
+Version 0.1.3
+=============
 
-## v0.1.1 - 2015-02-19
-- fixed issue #4
+- fixed issue #10
 
-## v0.1 - 2015-02-18
-- moved netcdf classes out of rs data readers
+Version 0.1.1
+=============
 
+- fixed issue #4
 
+Version 0.1
+===========
 
+- moved netcdf classes out of rs data readers

LICENSE.txt

@@ -1,27 +1,26 @@
-# Copyright (c) 2017, Vienna University of Technology,
-# Department of Geodesy and Geoinformation
-# All rights reserved.
+Copyright (c) 2020, TU Wien, Department of Geodesy and Geoinformation.
+All rights reserved.
 
-# Redistribution and use in source and binary forms, with or without
-# modification, are permitted provided that the following conditions are met:
-#   * Redistributions of source code must retain the above copyright
-#     notice, this list of conditions and the following disclaimer.
-#    * Redistributions in binary form must reproduce the above copyright
-#      notice, this list of conditions and the following disclaimer in the
-#      documentation and/or other materials provided with the distribution.
-#    * Neither the name of the Vienna University of Technology,
-#      Department of Geodesy and Geoinformation nor the
-#      names of its contributors may be used to endorse or promote products
-#      derived from this software without specific prior written permission.
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+  * Redistributions of source code must retain the above copyright
+    notice, this list of conditions and the following disclaimer.
+  * Redistributions in binary form must reproduce the above copyright
+    notice, this list of conditions and the following disclaimer in the
+    documentation and/or other materials provided with the distribution.
+  * Neither the name of the Vienna University of Technology,
+    Department of Geodesy and Geoinformation nor the
+    names of its contributors may be used to endorse or promote products
+    derived from this software without specific prior written permission.
 
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-# ARE DISCLAIMED. IN NO EVENT SHALL VIENNA UNIVERSITY OF TECHNOLOGY,
-# DEPARTMENT OF GEODESY AND GEOINFORMATION BE LIABLE FOR ANY
-# DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
-# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL VIENNA UNIVERSITY OF TECHNOLOGY,
+DEPARTMENT OF GEODESY AND GEOINFORMATION BE LIABLE FOR ANY
+DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.rst

@@ -2,11 +2,11 @@
 pynetcf
 =======
 
-.. image:: https://travis-ci.org/TUW-GEO/pynetCF.svg?branch=master
-    :target: https://travis-ci.org/TUW-GEO/pynetCF
+.. image:: https://travis-ci.org/TUW-GEO/pynetcf.svg?branch=master
+    :target: https://travis-ci.org/TUW-GEO/pynetcf
 
-.. image:: https://coveralls.io/repos/github/TUW-GEO/pynetCF/badge.svg?branch=master
-   :target: https://coveralls.io/github/TUW-GEO/pynetCF?branch=master
+.. image:: https://coveralls.io/repos/github/TUW-GEO/pynetcf/badge.svg?branch=master
+   :target: https://coveralls.io/github/TUW-GEO/pynetcf?branch=master
 
 .. image:: https://badge.fury.io/py/pynetcf.svg
     :target: https://badge.fury.io/py/pynetcf
@@ -64,8 +64,8 @@ Guidelines
 
 If you want to contribute please follow these steps:
 
-- Fork the pynetCF repository to your account
-- make a new feature branch from the pynetCF master branch
+- Fork the pynetcf repository to your account
+- make a new feature branch from the pynetcf master branch
 - Add your feature
 - Please include tests for your contributions in one of the test directories.
   We use py.test so a simple function called test_my_feature is enough
@@ -74,6 +74,5 @@ If you want to contribute please follow these steps:
 Note
 ====
 
-For now please see the tests for examples on how to use the classes.
-
-
+This project has been set up using PyScaffold 3.2.3. For details and usage
+information on PyScaffold see https://pyscaffold.org/.