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Dockerfile
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Dockerfile
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FROM tensorflow/tensorflow:1.12.0-devel-gpu-py3
WORKDIR /
COPY . .
RUN cd /usr/local/cuda/lib64 \
&& mv stubs/libcuda.so ./ \
&& ln -s libcuda.so libcuda.so.1 \
&& ldconfig
RUN apt-get update
RUN apt-get install -y autoconf \
automake \
cmake \
git \
libgtk2.0-dev \
libjpeg-dev \
liblcms2-dev \
libpng-dev \
libsqlite3-dev \
libtiff-dev \
libtool \
libxml2-dev \
pkg-config \
python-pip \
sqlite3 \
wget
RUN git clone https://github.com/uclouvain/openjpeg.git
RUN cd openjpeg && mkdir build && cd build && cmake ../ -DCMAKE_BUILD_TYPE=Release && make && make install && make clean
RUN git clone https://github.com/openslide/openslide.git
RUN cd openslide && autoreconf -i && ./configure && make && make install
RUN wget https://github.com/openslide/openslide/releases/download/v3.4.1/openslide-3.4.1.tar.gz
RUN tar xvzf openslide-3.4.1.tar.gz
RUN cd openslide-3.4.1 && ./configure && make && make install && cd /
RUN pip install --upgrade pip
RUN pip install -r ./requirements.txt
ENV LD_LIBRARY_PATH /usr/local/lib